RNA–Protein interactions for RNA: ENST00000466205.5

CD40-204, Transcript of CD40 molecule, humanhuman

TSL 1 (best)

Gene CD40, Length 822 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-204ENST00000466205 NUDCQ9Y266 331 aa13.64□□□□□ -0.23
CD40-204ENST00000466205 PHF14O94880 888 aa13.63□□□□□ -0.23
CD40-204ENST00000466205 ITPK1Q13572 414 aa13.63□□□□□ -0.23
CD40-204ENST00000466205 LINC00116Q8NCU8 138 aa13.63□□□□□ -0.23
CD40-204ENST00000466205 RSPH6AQ9H0K4 717 aa13.63□□□□□ -0.23
CD40-204ENST00000466205 RNMTO43148 476 aaKnown RBP13.62□□□□□ -0.23
CD40-204ENST00000466205 PTCD1O75127 700 aaKnown RBP13.62□□□□□ -0.23
CD40-204ENST00000466205 PHACTR3Q96KR7 559 aa13.62□□□□□ -0.23
CD40-204ENST00000466205 AK7Q96M32 723 aa13.62□□□□□ -0.23
CD40-204ENST00000466205 C4BP0C0L5 1744 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 SLC39A6Q13433 755 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 AMIGO3Q86WK7 504 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
CD40-204ENST00000466205 SLC4A9Q96Q91 983 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 MTFR1LQ9H019 292 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 TAF1LQ8IZX4 1826 aa13.61□□□□□ -0.23
CD40-204ENST00000466205 SCN11AQ9UI33 1791 aa13.6□□□□□ -0.23
CD40-204ENST00000466205 PTGER2P43116 358 aa13.6□□□□□ -0.23
CD40-204ENST00000466205 MSL1Q68DK7 614 aa13.6□□□□□ -0.23
CD40-204ENST00000466205 GAS2L2Q8NHY3 880 aa13.6□□□□□ -0.23
CD40-204ENST00000466205 SLC52A2Q9HAB3 445 aa13.6□□□□□ -0.23
CD40-204ENST00000466205 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
CD40-204ENST00000466205 RALBP1Q15311 655 aa13.59□□□□□ -0.23
CD40-204ENST00000466205 KLHL34Q8N239 644 aa13.59□□□□□ -0.23
CD40-204ENST00000466205 VIRMAQ69YN4 1812 aaKnown RBP13.59□□□□□ -0.23
CD40-204ENST00000466205 GNAT3A8MTJ3 354 aa13.58□□□□□ -0.24
CD40-204ENST00000466205 GNPATO15228 680 aa13.58□□□□□ -0.24
CD40-204ENST00000466205 QSER1Q2KHR3 1735 aa13.58□□□□□ -0.24
CD40-204ENST00000466205 IL17REQ8NFR9 667 aa13.57□□□□□ -0.24
CD40-204ENST00000466205 MYBBP1AQ9BQG0 1328 aaKnown RBP13.57□□□□□ -0.24
CD40-204ENST00000466205 MRC1P22897 1456 aa13.56□□□□□ -0.24
CD40-204ENST00000466205 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.56□□□□□ -0.24
CD40-204ENST00000466205 FCHSD2O94868 740 aa13.56□□□□□ -0.24
CD40-204ENST00000466205 DCTN1Q14203 1278 aa13.56□□□□□ -0.24
CD40-204ENST00000466205 MCM10Q7L590 875 aa13.56□□□□□ -0.24
CD40-204ENST00000466205 ZNF316A6NFI3 1004 aaPredicted RBP13.55□□□□□ -0.24
CD40-204ENST00000466205 TEFQ10587 303 aa13.55□□□□□ -0.24
CD40-204ENST00000466205 ARXQ96QS3 562 aa13.55□□□□□ -0.24
CD40-204ENST00000466205 SGIP1Q9BQI5 828 aa13.55□□□□□ -0.24
CD40-204ENST00000466205 ADAMTS7Q9UKP4 1686 aa13.55□□□□□ -0.24
CD40-204ENST00000466205 TJP1Q07157 1748 aa13.54□□□□□ -0.24
CD40-204ENST00000466205 POLD1P28340 1107 aa13.54□□□□□ -0.24
CD40-204ENST00000466205 DNAJC10Q8IXB1 793 aa13.54□□□□□ -0.24
CD40-204ENST00000466205 SLC16A10Q8TF71 515 aa13.54□□□□□ -0.24
CD40-204ENST00000466205 RTF1Q92541 710 aaKnown RBP13.54□□□□□ -0.24
CD40-204ENST00000466205 FHDC1Q9C0D6 1143 aaPredicted RBP13.54□□□□□ -0.24
CD40-204ENST00000466205 UBR3Q6ZT12 1888 aa13.54□□□□□ -0.24
CD40-204ENST00000466205 COL5A3P25940 1745 aaPredicted RBP13.53□□□□□ -0.24
CD40-204ENST00000466205 NEFMP07197 916 aa13.53□□□□□ -0.24
CD40-204ENST00000466205 TTC5Q8N0Z6 440 aa13.53□□□□□ -0.24
CD40-204ENST00000466205 PRKRIP1Q9H875 184 aaPredicted RBP13.53□□□□□ -0.24
CD40-204ENST00000466205 RTCBQ9Y3I0 505 aaKnown RBP13.53□□□□□ -0.24
CD40-204ENST00000466205 KCPQ6ZWJ8 1503 aa13.53□□□□□ -0.24
CD40-204ENST00000466205 KCNQ3O43525 872 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 SSFA2P28290 1259 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 CCDC146Q8IYE0 955 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 FLAD1Q8NFF5 587 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 PLEKHF1Q96S99 279 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 MAPK8IP3Q9UPT6 1336 aa13.52□□□□□ -0.25
CD40-204ENST00000466205 CNTNAP4Q9C0A0 1308 aa13.51□□□□□ -0.25
CD40-204ENST00000466205 BTBD11A6QL63 1104 aa13.51□□□□□ -0.25
CD40-204ENST00000466205 HMGB2P26583 209 aaKnown RBP13.51□□□□□ -0.25
CD40-204ENST00000466205 CRKLP46109 303 aaKnown RBP13.51□□□□□ -0.25
CD40-204ENST00000466205 TRAPPC3LQ5T215 181 aa13.51□□□□□ -0.25
CD40-204ENST00000466205 THUMPD2Q9BTF0 503 aaKnown RBP13.51□□□□□ -0.25
CD40-204ENST00000466205 ARHGEF1Q92888 912 aaKnown RBP13.5□□□□□ -0.25
CD40-204ENST00000466205 SYT17Q9BSW7 474 aa13.5□□□□□ -0.25
CD40-204ENST00000466205 ZNF831Q5JPB2 1677 aa13.5□□□□□ -0.25
CD40-204ENST00000466205 CEMIPQ8WUJ3 1361 aa13.49□□□□□ -0.25
CD40-204ENST00000466205 RPS6KA4O75676 772 aa13.49□□□□□ -0.25
CD40-204ENST00000466205 WDR43Q15061 677 aaKnown RBP eCLIP13.49□□□□□ -0.25
CD40-204ENST00000466205 ZNF790Q6PG37 636 aa13.49□□□□□ -0.25
CD40-204ENST00000466205 ZNF496Q96IT1 587 aaPredicted RBP13.49□□□□□ -0.25
CD40-204ENST00000466205 MIS18AQ9NYP9 233 aa13.49□□□□□ -0.25
CD40-204ENST00000466205 RRP7AQ9Y3A4 280 aaKnown RBP13.49□□□□□ -0.25
CD40-204ENST00000466205 SIPA1L3O60292 1781 aaPredicted RBP13.49□□□□□ -0.25
CD40-204ENST00000466205 RFC4P35249 363 aa13.48□□□□□ -0.25
CD40-204ENST00000466205 NEUROD2Q15784 382 aa13.48□□□□□ -0.25
CD40-204ENST00000466205 NFE2L2Q16236 605 aa13.48□□□□□ -0.25
CD40-204ENST00000466205 RC3H1Q5TC82 1133 aaKnown RBP13.48□□□□□ -0.25
CD40-204ENST00000466205 INTS5Q6P9B9 1019 aaKnown RBP13.48□□□□□ -0.25
CD40-204ENST00000466205 SRP68Q9UHB9 627 aaKnown RBP13.48□□□□□ -0.25
CD40-204ENST00000466205 ZBTB1Q9Y2K1 713 aa13.48□□□□□ -0.25
CD40-204ENST00000466205 UBR2Q8IWV8 1755 aa13.48□□□□□ -0.25
CD40-204ENST00000466205 COL24A1Q17RW2 1714 aa13.47□□□□□ -0.25
CD40-204ENST00000466205 MYH14Q7Z406 1995 aaKnown RBP13.47□□□□□ -0.25
CD40-204ENST00000466205 DLG5Q8TDM6 1919 aa13.47□□□□□ -0.25
CD40-204ENST00000466205 CYP19A1P11511 503 aaPredicted RBP13.47□□□□□ -0.25
CD40-204ENST00000466205 CANXP27824 592 aaKnown RBP13.47□□□□□ -0.25
CD40-204ENST00000466205 NLGN2Q8NFZ4 835 aa13.47□□□□□ -0.25
CD40-204ENST00000466205 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
CD40-204ENST00000466205 CCDC87Q9NVE4 849 aa13.47□□□□□ -0.25
CD40-204ENST00000466205 ZNF330Q9Y3S2 320 aaPredicted RBP13.47□□□□□ -0.25
CD40-204ENST00000466205 HEG1Q9ULI3 1381 aa13.46□□□□□ -0.25
CD40-204ENST00000466205 SENP3-EIF4A1A0A087X0R7 540 aa13.46□□□□□ -0.25
CD40-204ENST00000466205 PRAMEF22A3QJZ6 481 aa13.46□□□□□ -0.25
CD40-204ENST00000466205 CCDC184Q52MB2 194 aa13.46□□□□□ -0.25
CD40-204ENST00000466205 PELP1Q8IZL8 1130 aaKnown RBP13.46□□□□□ -0.25
CD40-204ENST00000466205 FMNL2Q96PY5 1086 aa13.46□□□□□ -0.25
CD40-204ENST00000466205 WWC3Q9ULE0 1092 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms