RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 CHL1O00533 1208 aa23.88■■□□□ 1.41
SDF4-205ENST00000465727 DIP2CQ9Y2E4 1556 aa23.88■■□□□ 1.41
SDF4-205ENST00000465727 SALL3Q9BXA9 1300 aa23.88■■□□□ 1.41
SDF4-205ENST00000465727 CCDC183Q5T5S1 534 aa23.87■■□□□ 1.41
SDF4-205ENST00000465727 SPTLC3Q9NUV7 552 aa23.87■■□□□ 1.41
SDF4-205ENST00000465727 CCT4P50991 539 aaKnown RBP23.85■■□□□ 1.41
SDF4-205ENST00000465727 DCTN1Q14203 1278 aa23.85■■□□□ 1.41
SDF4-205ENST00000465727 USP48Q86UV5 1035 aa23.85■■□□□ 1.41
SDF4-205ENST00000465727 DMTNQ08495 405 aa23.85■■□□□ 1.41
SDF4-205ENST00000465727 FKBP5Q13451 457 aaPredicted RBP23.85■■□□□ 1.41
SDF4-205ENST00000465727 MON2Q7Z3U7 1717 aa23.84■■□□□ 1.41
SDF4-205ENST00000465727 RAPGEF3O95398 923 aa23.83■■□□□ 1.41
SDF4-205ENST00000465727 PLEKHG5O94827 1062 aa23.83■■□□□ 1.41
SDF4-205ENST00000465727 COG3Q96JB2 828 aa23.83■■□□□ 1.41
SDF4-205ENST00000465727 SRCIN1Q9C0H9 1055 aa23.83■■□□□ 1.41
SDF4-205ENST00000465727 PALD1Q9ULE6 856 aa23.83■■□□□ 1.41
SDF4-205ENST00000465727 TCHHQ07283 1943 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 GADD45BO75293 160 aaPredicted RBP23.82■■□□□ 1.4
SDF4-205ENST00000465727 MX1P20591 662 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 CHMLP26374 656 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 ANO2Q9NQ90 1003 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 USP25Q9UHP3 1055 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 KIF3AQ9Y496 699 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 ADCY5O95622 1261 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.82■■□□□ 1.4
SDF4-205ENST00000465727 RPAP1Q9BWH6 1393 aaPredicted RBP23.82■■□□□ 1.4
SDF4-205ENST00000465727 LRRCC1Q9C099 1032 aa23.82■■□□□ 1.4
SDF4-205ENST00000465727 TPM3P06753 285 aa23.81■■□□□ 1.4
SDF4-205ENST00000465727 KRT24Q2M2I5 525 aa23.81■■□□□ 1.4
SDF4-205ENST00000465727 NME9Q86XW9 330 aa23.81■■□□□ 1.4
SDF4-205ENST00000465727 ARHGEF10O15013 1369 aa23.81■■□□□ 1.4
SDF4-205ENST00000465727 AOX1Q06278 1338 aa23.8■■□□□ 1.4
SDF4-205ENST00000465727 GNAI2P04899 355 aa23.8■■□□□ 1.4
SDF4-205ENST00000465727 ZNF710Q8N1W2 664 aa23.8■■□□□ 1.4
SDF4-205ENST00000465727 STAP2Q9UGK3 403 aa23.8■■□□□ 1.4
SDF4-205ENST00000465727 UBE2HP62256 183 aa23.79■■□□□ 1.4
SDF4-205ENST00000465727 SLC4A2P04920 1241 aa23.79■■□□□ 1.4
SDF4-205ENST00000465727 ZSCAN20P17040 1043 aaPredicted RBP23.79■■□□□ 1.4
SDF4-205ENST00000465727 RICTORQ6R327 1708 aa23.78■■□□□ 1.4
SDF4-205ENST00000465727 KDM4AO75164 1064 aa23.78■■□□□ 1.4
SDF4-205ENST00000465727 ARID3AQ99856 593 aa23.78■■□□□ 1.4
SDF4-205ENST00000465727 GTPBP4Q9BZE4 634 aaKnown RBP23.78■■□□□ 1.4
SDF4-205ENST00000465727 C3P01024 1663 aa23.78■■□□□ 1.4
SDF4-205ENST00000465727 KDM4FA0A1W2PPD8 638 aa23.77■■□□□ 1.4
SDF4-205ENST00000465727 GDPD2Q9HCC8 539 aa23.77■■□□□ 1.4
SDF4-205ENST00000465727 DIAPH3Q9NSV4 1193 aa23.77■■□□□ 1.4
SDF4-205ENST00000465727 ATP6V1DQ9Y5K8 247 aa23.77■■□□□ 1.4
SDF4-205ENST00000465727 SETD1AO15047 1707 aaKnown RBP23.77■■□□□ 1.4
SDF4-205ENST00000465727 AKAP12Q02952 1782 aa23.76■■□□□ 1.39
SDF4-205ENST00000465727 TTC12Q9H892 705 aaPredicted RBP23.76■■□□□ 1.39
SDF4-205ENST00000465727 HSPA4P34932 840 aa23.75■■□□□ 1.39
SDF4-205ENST00000465727 TRIM6-TRIM34B2RNG4 842 aa23.75■■□□□ 1.39
SDF4-205ENST00000465727 HCLS1P14317 486 aaPredicted RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 RRS1Q15050 365 aaKnown RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 AEBP2Q6ZN18 517 aaPredicted RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 NOL8Q76FK4 1167 aaKnown RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 ZNF830Q96NB3 372 aaPredicted RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 SENP3Q9H4L4 574 aaPredicted RBP23.75■■□□□ 1.39
SDF4-205ENST00000465727 EXOC6BQ9Y2D4 811 aa23.75■■□□□ 1.39
SDF4-205ENST00000465727 CRB1P82279 1406 aa23.74■■□□□ 1.39
SDF4-205ENST00000465727 ZSCAN22P10073 491 aaPredicted RBP23.74■■□□□ 1.39
SDF4-205ENST00000465727 CHAF1AQ13111 956 aaPredicted RBP23.74■■□□□ 1.39
SDF4-205ENST00000465727 RILPL2Q969X0 211 aa23.74■■□□□ 1.39
SDF4-205ENST00000465727 UPF3BQ9BZI7 483 aaKnown RBP23.74■■□□□ 1.39
SDF4-205ENST00000465727 ITSN1Q15811 1721 aa23.74■■□□□ 1.39
SDF4-205ENST00000465727 GNAI3P08754 354 aa23.74■■□□□ 1.39
SDF4-205ENST00000465727 CPS1P31327 1500 aa23.73■■□□□ 1.39
SDF4-205ENST00000465727 WASLO00401 505 aaPredicted RBP23.73■■□□□ 1.39
SDF4-205ENST00000465727 PRDM10Q9NQV6 1147 aa23.73■■□□□ 1.39
SDF4-205ENST00000465727 FUCA2Q9BTY2 467 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.72■■□□□ 1.39
SDF4-205ENST00000465727 SULT6B1Q6IMI4 303 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 SLC4A10Q6U841 1118 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 WAPLQ7Z5K2 1190 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 KIAA1524Q8TCG1 905 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 ZRANB1Q9UGI0 708 aa23.72■■□□□ 1.39
SDF4-205ENST00000465727 N4BP2Q86UW6 1770 aaPredicted RBP23.71■■□□□ 1.39
SDF4-205ENST00000465727 GOLGA6L6A8MZA4 724 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 FOXD4L6Q3SYB3 417 aaPredicted RBP23.71■■□□□ 1.39
SDF4-205ENST00000465727 TSHZ3Q63HK5 1081 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 FOXD4L3Q6VB84 417 aaPredicted RBP23.71■■□□□ 1.39
SDF4-205ENST00000465727 MCM10Q7L590 875 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 CNPY2Q9Y2B0 182 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 RGPD1P0DJD0 1748 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 KIF20AO95235 890 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 ATP8B2P98198 1209 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 EIF4A2Q14240 407 aaKnown RBP23.71■■□□□ 1.39
SDF4-205ENST00000465727 BCL2L12Q9HB09 334 aa23.71■■□□□ 1.39
SDF4-205ENST00000465727 STX6O43752 255 aa23.7■■□□□ 1.38
SDF4-205ENST00000465727 PPP4R3BQ5MIZ7 849 aa23.7■■□□□ 1.38
SDF4-205ENST00000465727 AEBP1Q8IUX7 1158 aa23.69■■□□□ 1.38
SDF4-205ENST00000465727 F13A1P00488 732 aa23.68■■□□□ 1.38
SDF4-205ENST00000465727 RAD50Q92878 1312 aa23.68■■□□□ 1.38
SDF4-205ENST00000465727 CACNA1FO60840 1977 aa23.68■■□□□ 1.38
SDF4-205ENST00000465727 XRN1Q8IZH2 1706 aaKnown RBP23.68■■□□□ 1.38
SDF4-205ENST00000465727 PDCL2Q8N4E4 241 aa23.68■■□□□ 1.38
SDF4-205ENST00000465727 SPATA31D1Q6ZQQ2 1576 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 F6X3S4 739 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 ANKRD7Q92527 254 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 TSC1Q92574 1164 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms