RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 NFATC2IPQ8NCF5 419 aa26.96■■□□□ 1.91
SKA3-205ENST00000465471 C5P01031 1676 aa26.95■■□□□ 1.91
SKA3-205ENST00000465471 MAPK8IP3Q9UPT6 1336 aa26.95■■□□□ 1.91
SKA3-205ENST00000465471 NEFMP07197 916 aa26.95■■□□□ 1.9
SKA3-205ENST00000465471 HTATSF1O43719 755 aaKnown RBP26.94■■□□□ 1.9
SKA3-205ENST00000465471 NFE2L2Q16236 605 aa26.94■■□□□ 1.9
SKA3-205ENST00000465471 ANO8Q9HCE9 1232 aaPredicted RBP26.94■■□□□ 1.9
SKA3-205ENST00000465471 CICQ96RK0 1608 aaPredicted RBP26.94■■□□□ 1.9
SKA3-205ENST00000465471 CCNL1Q9UK58 526 aaPredicted RBP26.93■■□□□ 1.9
SKA3-205ENST00000465471 UBR2Q8IWV8 1755 aa26.92■■□□□ 1.9
SKA3-205ENST00000465471 MRS2Q9HD23 443 aa26.92■■□□□ 1.9
SKA3-205ENST00000465471 NBPF14Q5TI25 921 aa26.91■■□□□ 1.9
SKA3-205ENST00000465471 PNISRQ8TF01 805 aaKnown RBP26.91■■□□□ 1.9
SKA3-205ENST00000465471 RUNDC1Q96C34 613 aa26.91■■□□□ 1.9
SKA3-205ENST00000465471 CCDC146Q8IYE0 955 aa26.9■■□□□ 1.9
SKA3-205ENST00000465471 LOC102724428A0A0B4J2F2 783 aa26.89■■□□□ 1.9
SKA3-205ENST00000465471 KCNQ4P56696 695 aa26.89■■□□□ 1.9
SKA3-205ENST00000465471 SIK1P57059 783 aa26.89■■□□□ 1.9
SKA3-205ENST00000465471 QSER1Q2KHR3 1735 aa26.89■■□□□ 1.9
SKA3-205ENST00000465471 KCPQ6ZWJ8 1503 aa26.89■■□□□ 1.89
SKA3-205ENST00000465471 MCM10Q7L590 875 aa26.88■■□□□ 1.89
SKA3-205ENST00000465471 RTF1Q92541 710 aaKnown RBP26.88■■□□□ 1.89
SKA3-205ENST00000465471 TUBGCP6Q96RT7 1819 aa26.88■■□□□ 1.89
SKA3-205ENST00000465471 TMPOP42166 694 aaKnown RBP26.87■■□□□ 1.89
SKA3-205ENST00000465471 TEFQ10587 303 aa26.87■■□□□ 1.89
SKA3-205ENST00000465471 R3HDM1Q15032 1099 aaKnown RBP26.87■■□□□ 1.89
SKA3-205ENST00000465471 AKT1S1Q96B36 256 aa26.87■■□□□ 1.89
SKA3-205ENST00000465471 COL5A3P25940 1745 aaPredicted RBP26.87■■□□□ 1.89
SKA3-205ENST00000465471 C4BP0C0L5 1744 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 TJP1Q07157 1748 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 SLC15A2Q16348 729 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 ZNF827Q17R98 1081 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 SLC4A9Q96Q91 983 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 CASZ1Q86V15 1759 aa26.86■■□□□ 1.89
SKA3-205ENST00000465471 PSDA5PKW4 1024 aaPredicted RBP26.85■■□□□ 1.89
SKA3-205ENST00000465471 DCTN1Q14203 1278 aa26.85■■□□□ 1.89
SKA3-205ENST00000465471 STK32BQ9NY57 414 aa26.85■■□□□ 1.89
SKA3-205ENST00000465471 ITPK1Q13572 414 aa26.83■■□□□ 1.89
SKA3-205ENST00000465471 HMGB2P26583 209 aaKnown RBP26.82■■□□□ 1.88
SKA3-205ENST00000465471 RIPK4P57078 832 aa26.82■■□□□ 1.88
SKA3-205ENST00000465471 SLC39A6Q13433 755 aa26.82■■□□□ 1.88
SKA3-205ENST00000465471 KDM3BQ7LBC6 1761 aa26.8■■□□□ 1.88
SKA3-205ENST00000465471 ATP6V1AP38606 617 aa26.8■■□□□ 1.88
SKA3-205ENST00000465471 LINC00116Q8NCU8 138 aa26.8■■□□□ 1.88
SKA3-205ENST00000465471 RBM42Q9BTD8 480 aaKnown RBP26.8■■□□□ 1.88
SKA3-205ENST00000465471 UBR3Q6ZT12 1888 aa26.79■■□□□ 1.88
SKA3-205ENST00000465471 PTCD1O75127 700 aaKnown RBP26.79■■□□□ 1.88
SKA3-205ENST00000465471 LMOD3Q0VAK6 560 aa26.79■■□□□ 1.88
SKA3-205ENST00000465471 DIEXFQ68CQ4 756 aaKnown RBP26.79■■□□□ 1.88
SKA3-205ENST00000465471 ZNF790Q6PG37 636 aa26.79■■□□□ 1.88
SKA3-205ENST00000465471 RRP7AQ9Y3A4 280 aaKnown RBP26.79■■□□□ 1.88
SKA3-205ENST00000465471 BTBD11A6QL63 1104 aa26.77■■□□□ 1.88
SKA3-205ENST00000465471 THUMPD2Q9BTF0 503 aaKnown RBP26.77■■□□□ 1.88
SKA3-205ENST00000465471 TRIM35Q9UPQ4 493 aa26.77■■□□□ 1.88
SKA3-205ENST00000465471 APAF1O14727 1248 aa26.76■■□□□ 1.87
SKA3-205ENST00000465471 TAF7Q15545 349 aaPredicted RBP26.76■■□□□ 1.87
SKA3-205ENST00000465471 VSIG10Q8N0Z9 540 aa26.76■■□□□ 1.87
SKA3-205ENST00000465471 CCER2I3L3R5 266 aa26.75■■□□□ 1.87
SKA3-205ENST00000465471 TTC5Q8N0Z6 440 aa26.75■■□□□ 1.87
SKA3-205ENST00000465471 MYH14Q7Z406 1995 aaKnown RBP26.75■■□□□ 1.87
SKA3-205ENST00000465471 PNPLA7Q6ZV29 1317 aa26.74■■□□□ 1.87
SKA3-205ENST00000465471 LRP5O75197 1615 aa26.73■■□□□ 1.87
SKA3-205ENST00000465471 CNTNAP4Q9C0A0 1308 aa26.73■■□□□ 1.87
SKA3-205ENST00000465471 KCNQ3O43525 872 aa26.73■■□□□ 1.87
SKA3-205ENST00000465471 NEUROD2Q15784 382 aa26.73■■□□□ 1.87
SKA3-205ENST00000465471 ZNF496Q96IT1 587 aaPredicted RBP26.73■■□□□ 1.87
SKA3-205ENST00000465471 PDGFDQ9GZP0 370 aaPredicted RBP26.73■■□□□ 1.87
SKA3-205ENST00000465471 HEG1Q9ULI3 1381 aa26.72■■□□□ 1.87
SKA3-205ENST00000465471 TFCP2L1Q9NZI6 479 aa26.72■■□□□ 1.87
SKA3-205ENST00000465471 RC3H1Q5TC82 1133 aaKnown RBP26.71■■□□□ 1.87
SKA3-205ENST00000465471 AMIGO3Q86WK7 504 aa26.7■■□□□ 1.86
SKA3-205ENST00000465471 DNAJC10Q8IXB1 793 aa26.7■■□□□ 1.86
SKA3-205ENST00000465471 AK7Q96M32 723 aa26.7■■□□□ 1.86
SKA3-205ENST00000465471 FMNL2Q96PY5 1086 aa26.7■■□□□ 1.86
SKA3-205ENST00000465471 COL24A1Q17RW2 1714 aa26.69■■□□□ 1.86
SKA3-205ENST00000465471 NCBP3Q53F19 620 aaKnown RBP26.68■■□□□ 1.86
SKA3-205ENST00000465471 BABAM1Q9NWV8 329 aa26.68■■□□□ 1.86
SKA3-205ENST00000465471 FAM9BQ8IZU0 186 aa26.67■■□□□ 1.86
SKA3-205ENST00000465471 MIS18AQ9NYP9 233 aa26.67■■□□□ 1.86
SKA3-205ENST00000465471 SRCAPQ6ZRS2 3230 aa26.67■■□□□ 1.86
SKA3-205ENST00000465471 CYP19A1P11511 503 aaPredicted RBP26.66■■□□□ 1.86
SKA3-205ENST00000465471 CRKLP46109 303 aaKnown RBP26.66■■□□□ 1.86
SKA3-205ENST00000465471 GNPATO15228 680 aa26.65■■□□□ 1.86
SKA3-205ENST00000465471 SSFA2P28290 1259 aa26.65■■□□□ 1.86
SKA3-205ENST00000465471 CCDC27Q2M243 656 aa26.65■■□□□ 1.86
SKA3-205ENST00000465471 FLAD1Q8NFF5 587 aa26.65■■□□□ 1.86
SKA3-205ENST00000465471 LAMB4A4D0S4 1761 aa26.65■■□□□ 1.86
SKA3-205ENST00000465471 INTS5Q6P9B9 1019 aaKnown RBP26.64■■□□□ 1.86
SKA3-205ENST00000465471 COL23A1Q86Y22 540 aaPredicted RBP26.64■■□□□ 1.86
SKA3-205ENST00000465471 C4AP0C0L4 1744 aa26.64■■□□□ 1.85
SKA3-205ENST00000465471 MIER1Q8N108 512 aa26.63■■□□□ 1.85
SKA3-205ENST00000465471 TEX13AQ9BXU3 409 aaPredicted RBP26.63■■□□□ 1.85
SKA3-205ENST00000465471 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.62■■□□□ 1.85
SKA3-205ENST00000465471 CHL1O00533 1208 aa26.62■■□□□ 1.85
SKA3-205ENST00000465471 RPS6KA4O75676 772 aa26.62■■□□□ 1.85
SKA3-205ENST00000465471 EIF4A1P60842 406 aaKnown RBP26.62■■□□□ 1.85
SKA3-205ENST00000465471 SLC16A10Q8TF71 515 aa26.62■■□□□ 1.85
SKA3-205ENST00000465471 CCDC87Q9NVE4 849 aa26.62■■□□□ 1.85
SKA3-205ENST00000465471 MTFR1LQ9H019 292 aa26.61■■□□□ 1.85
SKA3-205ENST00000465471 TSPYL4Q9UJ04 414 aa26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms