RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SLC52A2Q9HAB3 445 aa15.48■□□□□ 0.07
CUX1-207ENST00000465461 SLC39A6Q13433 755 aa15.47■□□□□ 0.07
CUX1-207ENST00000465461 MAPK8IP3Q9UPT6 1336 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 SENP3-EIF4A1A0A087X0R7 540 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 NEFMP07197 916 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 ZNF827Q17R98 1081 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 SLC27A3Q5K4L6 730 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 SMARCC1Q92922 1105 aaPredicted RBP15.46■□□□□ 0.07
CUX1-207ENST00000465461 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.07
CUX1-207ENST00000465461 PDGFDQ9GZP0 370 aaPredicted RBP15.46■□□□□ 0.07
CUX1-207ENST00000465461 MRS2Q9HD23 443 aa15.46■□□□□ 0.07
CUX1-207ENST00000465461 RRP7AQ9Y3A4 280 aaKnown RBP15.46■□□□□ 0.07
CUX1-207ENST00000465461 LOC102724428A0A0B4J2F2 783 aa15.45■□□□□ 0.06
CUX1-207ENST00000465461 PTCD1O75127 700 aaKnown RBP15.45■□□□□ 0.06
CUX1-207ENST00000465461 SIK1P57059 783 aa15.45■□□□□ 0.06
CUX1-207ENST00000465461 SLC4A9Q96Q91 983 aa15.45■□□□□ 0.06
CUX1-207ENST00000465461 THUMPD2Q9BTF0 503 aaKnown RBP15.45■□□□□ 0.06
CUX1-207ENST00000465461 PNNQ9H307 717 aaKnown RBP15.45■□□□□ 0.06
CUX1-207ENST00000465461 STK32BQ9NY57 414 aa15.45■□□□□ 0.06
CUX1-207ENST00000465461 ADAMTS7Q9UKP4 1686 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 ITPK1Q13572 414 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 NEUROD2Q15784 382 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 NFE2L2Q16236 605 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 SLC15A2Q16348 729 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 RTF1Q92541 710 aaKnown RBP15.44■□□□□ 0.06
CUX1-207ENST00000465461 DLG5Q8TDM6 1919 aa15.44■□□□□ 0.06
CUX1-207ENST00000465461 PAPPAQ13219 1627 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 TEFQ10587 303 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 SMIM5Q71RC9 77 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 AKT1S1Q96B36 256 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 RUNDC1Q96C34 613 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 MRC1P22897 1456 aa15.43■□□□□ 0.06
CUX1-207ENST00000465461 KCNQ3O43525 872 aa15.42■□□□□ 0.06
CUX1-207ENST00000465461 TMPOP42166 694 aaKnown RBP15.42■□□□□ 0.06
CUX1-207ENST00000465461 RIPK4P57078 832 aa15.42■□□□□ 0.06
CUX1-207ENST00000465461 LINC00116Q8NCU8 138 aa15.42■□□□□ 0.06
CUX1-207ENST00000465461 PNISRQ8TF01 805 aaKnown RBP15.42■□□□□ 0.06
CUX1-207ENST00000465461 CEMIPQ8WUJ3 1361 aa15.41■□□□□ 0.06
CUX1-207ENST00000465461 MIS18AQ9NYP9 233 aa15.41■□□□□ 0.06
CUX1-207ENST00000465461 PIAS4Q8N2W9 510 aaPredicted RBP15.4■□□□□ 0.06
CUX1-207ENST00000465461 C5P01031 1676 aa15.4■□□□□ 0.06
CUX1-207ENST00000465461 TAF1LQ8IZX4 1826 aa15.39■□□□□ 0.05
CUX1-207ENST00000465461 BTBD11A6QL63 1104 aa15.39■□□□□ 0.05
CUX1-207ENST00000465461 APAF1O14727 1248 aa15.39■□□□□ 0.05
CUX1-207ENST00000465461 HTATSF1O43719 755 aaKnown RBP15.39■□□□□ 0.05
CUX1-207ENST00000465461 AMIGO3Q86WK7 504 aa15.39■□□□□ 0.05
CUX1-207ENST00000465461 TFCP2L1Q9NZI6 479 aa15.39■□□□□ 0.05
CUX1-207ENST00000465461 SIPA1L3O60292 1781 aaPredicted RBP15.39■□□□□ 0.05
CUX1-207ENST00000465461 DIEXFQ68CQ4 756 aaKnown RBP15.38■□□□□ 0.05
CUX1-207ENST00000465461 FAM9BQ8IZU0 186 aa15.38■□□□□ 0.05
CUX1-207ENST00000465461 PHF14O94880 888 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 ZBTB7AO95365 584 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 ZNF790Q6PG37 636 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 DNAJC10Q8IXB1 793 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 TTC5Q8N0Z6 440 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 ZNF496Q96IT1 587 aaPredicted RBP15.37■□□□□ 0.05
CUX1-207ENST00000465461 TUBGCP6Q96RT7 1819 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 PNPLA7Q6ZV29 1317 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 KCPQ6ZWJ8 1503 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 C4BP0C0L5 1744 aa15.37■□□□□ 0.05
CUX1-207ENST00000465461 TAF7Q15545 349 aaPredicted RBP15.36■□□□□ 0.05
CUX1-207ENST00000465461 AK7Q96M32 723 aa15.36■□□□□ 0.05
CUX1-207ENST00000465461 TRIM35Q9UPQ4 493 aa15.36■□□□□ 0.05
CUX1-207ENST00000465461 COL23A1Q86Y22 540 aaPredicted RBP15.35■□□□□ 0.05
CUX1-207ENST00000465461 ATF5Q9Y2D1 282 aaPredicted RBP15.35■□□□□ 0.05
CUX1-207ENST00000465461 TJP1Q07157 1748 aa15.34■□□□□ 0.05
CUX1-207ENST00000465461 CASZ1Q86V15 1759 aa15.34■□□□□ 0.05
CUX1-207ENST00000465461 PRAMEF22A3QJZ6 481 aa15.34■□□□□ 0.05
CUX1-207ENST00000465461 GNPATO15228 680 aa15.34■□□□□ 0.05
CUX1-207ENST00000465461 MIER1Q8N108 512 aa15.33■□□□□ 0.04
CUX1-207ENST00000465461 SALL2Q9Y467 1007 aaPredicted RBP15.33■□□□□ 0.04
CUX1-207ENST00000465461 UBR2Q8IWV8 1755 aa15.33■□□□□ 0.04
CUX1-207ENST00000465461 COL5A3P25940 1745 aaPredicted RBP15.32■□□□□ 0.04
CUX1-207ENST00000465461 CRKLP46109 303 aaKnown RBP15.32■□□□□ 0.04
CUX1-207ENST00000465461 LAS1LQ9Y4W2 734 aaKnown RBP15.32■□□□□ 0.04
CUX1-207ENST00000465461 HEG1Q9ULI3 1381 aa15.32■□□□□ 0.04
CUX1-207ENST00000465461 ZNF831Q5JPB2 1677 aa15.32■□□□□ 0.04
CUX1-207ENST00000465461 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.31■□□□□ 0.04
CUX1-207ENST00000465461 CYP19A1P11511 503 aaPredicted RBP15.31■□□□□ 0.04
CUX1-207ENST00000465461 LMOD3Q0VAK6 560 aa15.31■□□□□ 0.04
CUX1-207ENST00000465461 INTS5Q6P9B9 1019 aaKnown RBP15.31■□□□□ 0.04
CUX1-207ENST00000465461 FMNL2Q96PY5 1086 aa15.31■□□□□ 0.04
CUX1-207ENST00000465461 UBR3Q6ZT12 1888 aa15.31■□□□□ 0.04
CUX1-207ENST00000465461 MYH14Q7Z406 1995 aaKnown RBP15.31■□□□□ 0.04
CUX1-207ENST00000465461 MSL1Q68DK7 614 aa15.3■□□□□ 0.04
CUX1-207ENST00000465461 CNTNAP4Q9C0A0 1308 aa15.3■□□□□ 0.04
CUX1-207ENST00000465461 USP16Q9Y5T5 823 aa15.3■□□□□ 0.04
CUX1-207ENST00000465461 QSER1Q2KHR3 1735 aa15.29■□□□□ 0.04
CUX1-207ENST00000465461 PIP4K2AP48426 406 aaPredicted RBP15.29■□□□□ 0.04
CUX1-207ENST00000465461 RC3H1Q5TC82 1133 aaKnown RBP15.29■□□□□ 0.04
CUX1-207ENST00000465461 VSIG10Q8N0Z9 540 aa15.29■□□□□ 0.04
CUX1-207ENST00000465461 SPON1Q9HCB6 807 aa15.29■□□□□ 0.04
CUX1-207ENST00000465461 TSPYL4Q9UJ04 414 aa15.29■□□□□ 0.04
CUX1-207ENST00000465461 RTCBQ9Y3I0 505 aaKnown RBP15.29■□□□□ 0.04
CUX1-207ENST00000465461 RPS6KA4O75676 772 aa15.28■□□□□ 0.04
CUX1-207ENST00000465461 A1BGP04217 495 aa15.28■□□□□ 0.04
CUX1-207ENST00000465461 CANXP27824 592 aaKnown RBP15.28■□□□□ 0.04
CUX1-207ENST00000465461 EIF4A1P60842 406 aaKnown RBP15.28■□□□□ 0.04
CUX1-207ENST00000465461 ARHGEF1Q92888 912 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms