RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 PRIMPOLQ96LW4 560 aa8.87□□□□□ -0.99
USP48-206ENST00000464577 SETD1AO15047 1707 aaKnown RBP8.87□□□□□ -0.99
USP48-206ENST00000464577 SALL3Q9BXA9 1300 aa8.86□□□□□ -0.99
USP48-206ENST00000464577 CHL1O00533 1208 aa8.86□□□□□ -0.99
USP48-206ENST00000464577 PTMAP06454 111 aaKnown RBP8.86□□□□□ -0.99
USP48-206ENST00000464577 TMEM87AQ8NBN3 555 aa8.86□□□□□ -0.99
USP48-206ENST00000464577 ESYT1Q9BSJ8 1104 aa8.86□□□□□ -0.99
USP48-206ENST00000464577 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.86□□□□□ -0.99
USP48-206ENST00000464577 GTF2F1P35269 517 aaKnown RBP eCLIP8.85□□□□□ -0.99
USP48-206ENST00000464577 HMGN5P82970 282 aaKnown RBP8.85□□□□□ -0.99
USP48-206ENST00000464577 PIBF1Q8WXW3 757 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 MEIS3Q99687 375 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 C3P01024 1663 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 ARHGEF10O15013 1369 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 FAM83GA6ND36 823 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 FBLN1P23142 703 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 RNF214Q8ND24 703 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 CCDC94Q9BW85 323 aaPredicted RBP8.85□□□□□ -0.99
USP48-206ENST00000464577 WDR33Q9C0J8 1336 aaKnown RBP8.85□□□□□ -0.99
USP48-206ENST00000464577 AKAP12Q02952 1782 aa8.85□□□□□ -0.99
USP48-206ENST00000464577 RICTORQ6R327 1708 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 LETM1O95202 739 aaPredicted RBP8.84□□□□□ -0.99
USP48-206ENST00000464577 CCT4P50991 539 aaKnown RBP8.84□□□□□ -0.99
USP48-206ENST00000464577 CHAMP1Q96JM3 812 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 AOX1Q06278 1338 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 CPS1P31327 1500 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 PLEKHG5O94827 1062 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 TRHP20396 242 aaPredicted RBP8.84□□□□□ -0.99
USP48-206ENST00000464577 CCDC183Q5T5S1 534 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 UTP14CQ5TAP6 766 aaKnown RBP8.84□□□□□ -0.99
USP48-206ENST00000464577 NME9Q86XW9 330 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 COG3Q96JB2 828 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 SPTLC3Q9NUV7 552 aa8.84□□□□□ -0.99
USP48-206ENST00000464577 RPAP1Q9BWH6 1393 aaPredicted RBP8.83□□□□□ -1
USP48-206ENST00000464577 DCTN1Q14203 1278 aa8.83□□□□□ -1
USP48-206ENST00000464577 STAP2Q9UGK3 403 aa8.83□□□□□ -1
USP48-206ENST00000464577 CRB1P82279 1406 aa8.83□□□□□ -1
USP48-206ENST00000464577 RGPD1P0DJD0 1748 aa8.83□□□□□ -1
USP48-206ENST00000464577 ITSN1Q15811 1721 aa8.83□□□□□ -1
USP48-206ENST00000464577 APBB1O00213 710 aa8.82□□□□□ -1
USP48-206ENST00000464577 CHMLP26374 656 aa8.82□□□□□ -1
USP48-206ENST00000464577 KRT24Q2M2I5 525 aa8.82□□□□□ -1
USP48-206ENST00000464577 FOXD4L5Q5VV16 416 aaPredicted RBP8.82□□□□□ -1
USP48-206ENST00000464577 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.82□□□□□ -1
USP48-206ENST00000464577 FOXD4L4Q8WXT5 416 aaPredicted RBP8.82□□□□□ -1
USP48-206ENST00000464577 SRCIN1Q9C0H9 1055 aa8.82□□□□□ -1
USP48-206ENST00000464577 PALD1Q9ULE6 856 aa8.82□□□□□ -1
USP48-206ENST00000464577 N4BP2Q86UW6 1770 aaPredicted RBP8.82□□□□□ -1
USP48-206ENST00000464577 SPATA31D1Q6ZQQ2 1576 aa8.82□□□□□ -1
USP48-206ENST00000464577 MX1P20591 662 aa8.82□□□□□ -1
USP48-206ENST00000464577 NOLC1Q14978 699 aaKnown RBP eCLIP8.82□□□□□ -1
USP48-206ENST00000464577 USP48Q86UV5 1035 aa8.82□□□□□ -1
USP48-206ENST00000464577 WASLO00401 505 aaPredicted RBP8.81□□□□□ -1
USP48-206ENST00000464577 GADD45BO75293 160 aaPredicted RBP8.81□□□□□ -1
USP48-206ENST00000464577 GNAI2P04899 355 aa8.81□□□□□ -1
USP48-206ENST00000464577 NPM1P06748 294 aaKnown RBP eCLIP8.81□□□□□ -1
USP48-206ENST00000464577 FKBP5Q13451 457 aaPredicted RBP8.81□□□□□ -1
USP48-206ENST00000464577 LRRCC1Q9C099 1032 aa8.81□□□□□ -1
USP48-206ENST00000464577 TPM3P06753 285 aa8.81□□□□□ -1
USP48-206ENST00000464577 DMTNQ08495 405 aa8.81□□□□□ -1
USP48-206ENST00000464577 ANO2Q9NQ90 1003 aa8.81□□□□□ -1
USP48-206ENST00000464577 A2ML1A8K2U0 1454 aa8.8□□□□□ -1
USP48-206ENST00000464577 ADCY5O95622 1261 aa8.8□□□□□ -1
USP48-206ENST00000464577 HSPA4P34932 840 aa8.8□□□□□ -1
USP48-206ENST00000464577 UBE2HP62256 183 aa8.8□□□□□ -1
USP48-206ENST00000464577 EIF4A2Q14240 407 aaKnown RBP8.8□□□□□ -1
USP48-206ENST00000464577 RRS1Q15050 365 aaKnown RBP8.8□□□□□ -1
USP48-206ENST00000464577 DNTTIP2Q5QJE6 756 aaKnown RBP8.8□□□□□ -1
USP48-206ENST00000464577 ZNF710Q8N1W2 664 aa8.8□□□□□ -1
USP48-206ENST00000464577 ZRANB1Q9UGI0 708 aa8.8□□□□□ -1
USP48-206ENST00000464577 NALCNQ8IZF0 1738 aa8.8□□□□□ -1
USP48-206ENST00000464577 XRN1Q8IZH2 1706 aaKnown RBP8.8□□□□□ -1
USP48-206ENST00000464577 PXDNLA1KZ92 1463 aa8.8□□□□□ -1
USP48-206ENST00000464577 FAM208AQ9UK61 1670 aaKnown RBP8.79□□□□□ -1
USP48-206ENST00000464577 RAPGEF3O95398 923 aa8.79□□□□□ -1
USP48-206ENST00000464577 GNAI3P08754 354 aa8.79□□□□□ -1
USP48-206ENST00000464577 WAPLQ7Z5K2 1190 aa8.79□□□□□ -1
USP48-206ENST00000464577 SIRT1Q96EB6 747 aa8.79□□□□□ -1
USP48-206ENST00000464577 USP25Q9UHP3 1055 aa8.79□□□□□ -1
USP48-206ENST00000464577 TECPR2O15040 1411 aa8.79□□□□□ -1
USP48-206ENST00000464577 NRXN3Q9Y4C0 1643 aa8.79□□□□□ -1
USP48-206ENST00000464577 KDM4AO75164 1064 aa8.79□□□□□ -1
USP48-206ENST00000464577 ZSCAN22P10073 491 aaPredicted RBP8.79□□□□□ -1
USP48-206ENST00000464577 ATP8B2P98198 1209 aa8.79□□□□□ -1
USP48-206ENST00000464577 SULT6B1Q6IMI4 303 aa8.79□□□□□ -1
USP48-206ENST00000464577 MCM10Q7L590 875 aa8.79□□□□□ -1
USP48-206ENST00000464577 AEBP1Q8IUX7 1158 aa8.79□□□□□ -1
USP48-206ENST00000464577 FUCA2Q9BTY2 467 aa8.79□□□□□ -1
USP48-206ENST00000464577 EXOC6BQ9Y2D4 811 aa8.79□□□□□ -1
USP48-206ENST00000464577 KIF3AQ9Y496 699 aa8.79□□□□□ -1
USP48-206ENST00000464577 ATP6V1DQ9Y5K8 247 aa8.79□□□□□ -1
USP48-206ENST00000464577 OVOS2A0A0J9YW53 1432 aa8.79□□□□□ -1
USP48-206ENST00000464577 OVOS2Q6IE36 1432 aa8.79□□□□□ -1
USP48-206ENST00000464577 NUDT16Q96DE0 195 aaKnown RBP8.78□□□□□ -1
USP48-206ENST00000464577 GDPD2Q9HCC8 539 aa8.78□□□□□ -1
USP48-206ENST00000464577 CCDC61Q9Y6R9 512 aa8.78□□□□□ -1
USP48-206ENST00000464577 RAD50Q92878 1312 aa8.78□□□□□ -1
USP48-206ENST00000464577 LRRC37A3O60309 1634 aa8.78□□□□□ -1
USP48-206ENST00000464577 SOS1Q07889 1333 aaPredicted RBP8.77□□□□□ -1
USP48-206ENST00000464577 G2E3Q7L622 706 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 313 ms