RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 FHDC1Q9C0D6 1143 aaPredicted RBP20.83■□□□□ 0.93
LIMS1-211ENST00000462817 NUDCQ9Y266 331 aa20.83■□□□□ 0.93
LIMS1-211ENST00000462817 KDM6AO15550 1401 aaPredicted RBP20.82■□□□□ 0.92
LIMS1-211ENST00000462817 PHF14O94880 888 aa20.82■□□□□ 0.92
LIMS1-211ENST00000462817 NFATC2IPQ8NCF5 419 aa20.82■□□□□ 0.92
LIMS1-211ENST00000462817 TUBGCP6Q96RT7 1819 aa20.82■□□□□ 0.92
LIMS1-211ENST00000462817 TAF1LQ8IZX4 1826 aa20.81■□□□□ 0.92
LIMS1-211ENST00000462817 PPP2R1AP30153 589 aa20.8■□□□□ 0.92
LIMS1-211ENST00000462817 MTHFSDQ2M296 383 aaKnown RBP20.8■□□□□ 0.92
LIMS1-211ENST00000462817 LINC00116Q8NCU8 138 aa20.8■□□□□ 0.92
LIMS1-211ENST00000462817 SYT17Q9BSW7 474 aa20.8■□□□□ 0.92
LIMS1-211ENST00000462817 C4BP0C0L5 1744 aa20.8■□□□□ 0.92
LIMS1-211ENST00000462817 GNPATO15228 680 aa20.79■□□□□ 0.92
LIMS1-211ENST00000462817 PTCD1O75127 700 aaKnown RBP20.79■□□□□ 0.92
LIMS1-211ENST00000462817 ITPK1Q13572 414 aa20.79■□□□□ 0.92
LIMS1-211ENST00000462817 MSL1Q68DK7 614 aa20.79■□□□□ 0.92
LIMS1-211ENST00000462817 COL3A1P02461 1466 aaPredicted RBP20.77■□□□□ 0.92
LIMS1-211ENST00000462817 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.77■□□□□ 0.92
LIMS1-211ENST00000462817 RNMTO43148 476 aaKnown RBP20.77■□□□□ 0.92
LIMS1-211ENST00000462817 SSFA2P28290 1259 aa20.77■□□□□ 0.92
LIMS1-211ENST00000462817 LGR6Q9HBX8 967 aa20.77■□□□□ 0.92
LIMS1-211ENST00000462817 GAS2L2Q8NHY3 880 aa20.76■□□□□ 0.91
LIMS1-211ENST00000462817 SLC52A2Q9HAB3 445 aa20.76■□□□□ 0.91
LIMS1-211ENST00000462817 U2AF1L5P0DN76 240 aaPredicted RBP20.75■□□□□ 0.91
LIMS1-211ENST00000462817 U2AF1Q01081 240 aaKnown RBP eCLIP20.75■□□□□ 0.91
LIMS1-211ENST00000462817 RTCBQ9Y3I0 505 aaKnown RBP20.75■□□□□ 0.91
LIMS1-211ENST00000462817 SMIM5Q71RC9 77 aa20.74■□□□□ 0.91
LIMS1-211ENST00000462817 SCN11AQ9UI33 1791 aa20.73■□□□□ 0.91
LIMS1-211ENST00000462817 PRKAR2BP31323 418 aa20.73■□□□□ 0.91
LIMS1-211ENST00000462817 SLC4A9Q96Q91 983 aa20.73■□□□□ 0.91
LIMS1-211ENST00000462817 GNAT3A8MTJ3 354 aa20.72■□□□□ 0.91
LIMS1-211ENST00000462817 TRAPPC3LQ5T215 181 aa20.72■□□□□ 0.91
LIMS1-211ENST00000462817 TEFQ10587 303 aa20.71■□□□□ 0.91
LIMS1-211ENST00000462817 RC3H1Q5TC82 1133 aaKnown RBP20.71■□□□□ 0.91
LIMS1-211ENST00000462817 AMIGO3Q86WK7 504 aa20.71■□□□□ 0.91
LIMS1-211ENST00000462817 UBR3Q6ZT12 1888 aa20.71■□□□□ 0.91
LIMS1-211ENST00000462817 MAP3K5Q99683 1374 aa20.71■□□□□ 0.91
LIMS1-211ENST00000462817 NEFMP07197 916 aa20.7■□□□□ 0.9
LIMS1-211ENST00000462817 DDX10Q13206 875 aaKnown RBP20.7■□□□□ 0.9
LIMS1-211ENST00000462817 SLC39A6Q13433 755 aa20.69■□□□□ 0.9
LIMS1-211ENST00000462817 PELP1Q8IZL8 1130 aaKnown RBP20.69■□□□□ 0.9
LIMS1-211ENST00000462817 TTC5Q8N0Z6 440 aa20.69■□□□□ 0.9
LIMS1-211ENST00000462817 RSPH6AQ9H0K4 717 aa20.69■□□□□ 0.9
LIMS1-211ENST00000462817 CNTNAP4Q9C0A0 1308 aa20.69■□□□□ 0.9
LIMS1-211ENST00000462817 RPS6KA4O75676 772 aa20.68■□□□□ 0.9
LIMS1-211ENST00000462817 FCHSD2O94868 740 aa20.68■□□□□ 0.9
LIMS1-211ENST00000462817 RFC4P35249 363 aa20.68■□□□□ 0.9
LIMS1-211ENST00000462817 GPR162Q16538 588 aa20.68■□□□□ 0.9
LIMS1-211ENST00000462817 ZNF831Q5JPB2 1677 aa20.67■□□□□ 0.9
LIMS1-211ENST00000462817 COL24A1Q17RW2 1714 aa20.67■□□□□ 0.9
LIMS1-211ENST00000462817 ADRA2BP18089 450 aa20.67■□□□□ 0.9
LIMS1-211ENST00000462817 YY1P25490 414 aa20.67■□□□□ 0.9
LIMS1-211ENST00000462817 CRKLP46109 303 aaKnown RBP20.67■□□□□ 0.9
LIMS1-211ENST00000462817 RTF1Q92541 710 aaKnown RBP20.67■□□□□ 0.9
LIMS1-211ENST00000462817 PHACTR3Q96KR7 559 aa20.67■□□□□ 0.9
LIMS1-211ENST00000462817 IL17REQ8NFR9 667 aa20.65■□□□□ 0.9
LIMS1-211ENST00000462817 ARHGEF1Q92888 912 aaKnown RBP20.65■□□□□ 0.9
LIMS1-211ENST00000462817 VIRMAQ69YN4 1812 aaKnown RBP20.64■□□□□ 0.9
LIMS1-211ENST00000462817 MRC1P22897 1456 aa20.64■□□□□ 0.89
LIMS1-211ENST00000462817 RALBP1Q15311 655 aa20.64■□□□□ 0.89
LIMS1-211ENST00000462817 DNAJC10Q8IXB1 793 aa20.64■□□□□ 0.89
LIMS1-211ENST00000462817 NLGN1Q8N2Q7 840 aa20.64■□□□□ 0.89
LIMS1-211ENST00000462817 NLGN2Q8NFZ4 835 aa20.64■□□□□ 0.89
LIMS1-211ENST00000462817 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
LIMS1-211ENST00000462817 CD2APQ9Y5K6 639 aa20.63■□□□□ 0.89
LIMS1-211ENST00000462817 COL5A3P25940 1745 aaPredicted RBP20.63■□□□□ 0.89
LIMS1-211ENST00000462817 CCDC87Q9NVE4 849 aa20.62■□□□□ 0.89
LIMS1-211ENST00000462817 MMP10P09238 476 aa20.61■□□□□ 0.89
LIMS1-211ENST00000462817 VSIG10Q8N0Z9 540 aa20.61■□□□□ 0.89
LIMS1-211ENST00000462817 PNNQ9H307 717 aaKnown RBP20.61■□□□□ 0.89
LIMS1-211ENST00000462817 BTBD11A6QL63 1104 aa20.6■□□□□ 0.89
LIMS1-211ENST00000462817 ADAMTS7Q9UKP4 1686 aa20.6■□□□□ 0.89
LIMS1-211ENST00000462817 STARD3NLO95772 234 aa20.59■□□□□ 0.89
LIMS1-211ENST00000462817 ZNF790Q6PG37 636 aa20.59■□□□□ 0.89
LIMS1-211ENST00000462817 MYH14Q7Z406 1995 aaKnown RBP20.58■□□□□ 0.89
LIMS1-211ENST00000462817 ZPR1O75312 459 aa20.58■□□□□ 0.89
LIMS1-211ENST00000462817 CYP19A1P11511 503 aaPredicted RBP20.58■□□□□ 0.89
LIMS1-211ENST00000462817 GYS1P13807 737 aa20.58■□□□□ 0.89
LIMS1-211ENST00000462817 INTS5Q6P9B9 1019 aaKnown RBP20.58■□□□□ 0.89
LIMS1-211ENST00000462817 PARP3Q9Y6F1 533 aa20.58■□□□□ 0.89
LIMS1-211ENST00000462817 TJP1Q07157 1748 aa20.58■□□□□ 0.88
LIMS1-211ENST00000462817 MCM10Q7L590 875 aa20.57■□□□□ 0.88
LIMS1-211ENST00000462817 FMNL2Q96PY5 1086 aa20.57■□□□□ 0.88
LIMS1-211ENST00000462817 TEX13AQ9BXU3 409 aaPredicted RBP20.57■□□□□ 0.88
LIMS1-211ENST00000462817 KCPQ6ZWJ8 1503 aa20.57■□□□□ 0.88
LIMS1-211ENST00000462817 MAPK8IP3Q9UPT6 1336 aa20.56■□□□□ 0.88
LIMS1-211ENST00000462817 HTATSF1O43719 755 aaKnown RBP20.56■□□□□ 0.88
LIMS1-211ENST00000462817 ZNF496Q96IT1 587 aaPredicted RBP20.56■□□□□ 0.88
LIMS1-211ENST00000462817 CEMIPQ8WUJ3 1361 aa20.56■□□□□ 0.88
LIMS1-211ENST00000462817 GRIN3BO60391 1043 aa20.55■□□□□ 0.88
LIMS1-211ENST00000462817 CANXP27824 592 aaKnown RBP20.55■□□□□ 0.88
LIMS1-211ENST00000462817 NPM2Q86SE8 214 aaKnown RBP20.55■□□□□ 0.88
LIMS1-211ENST00000462817 SRP68Q9UHB9 627 aaKnown RBP20.55■□□□□ 0.88
LIMS1-211ENST00000462817 CICQ96RK0 1608 aaPredicted RBP20.54■□□□□ 0.88
LIMS1-211ENST00000462817 DCTN1Q14203 1278 aa20.54■□□□□ 0.88
LIMS1-211ENST00000462817 ZBTB1Q9Y2K1 713 aa20.54■□□□□ 0.88
LIMS1-211ENST00000462817 SOS1Q07889 1333 aaPredicted RBP20.53■□□□□ 0.88
LIMS1-211ENST00000462817 MYBBP1AQ9BQG0 1328 aaKnown RBP20.53■□□□□ 0.88
LIMS1-211ENST00000462817 USP42Q9H9J4 1324 aaKnown RBP20.53■□□□□ 0.88
LIMS1-211ENST00000462817 ZNF330Q9Y3S2 320 aaPredicted RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms