RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 TMPOP42166 694 aaKnown RBP10.12□□□□□ -0.79
USP4-207ENST00000462673 TAF7Q15545 349 aaPredicted RBP10.12□□□□□ -0.79
USP4-207ENST00000462673 PIGBQ92521 554 aa10.12□□□□□ -0.79
USP4-207ENST00000462673 TEX13AQ9BXU3 409 aaPredicted RBP10.12□□□□□ -0.79
USP4-207ENST00000462673 LGR6Q9HBX8 967 aa10.12□□□□□ -0.79
USP4-207ENST00000462673 BABAM1Q9NWV8 329 aa10.12□□□□□ -0.79
USP4-207ENST00000462673 KAT6BQ8WYB5 2073 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 PKD1L3Q7Z443 1732 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 BTBD11A6QL63 1104 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 NEUROD2Q15784 382 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 TXNRD1Q16881 649 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 CCDC146Q8IYE0 955 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 CAMKK2Q96RR4 588 aa10.11□□□□□ -0.79
USP4-207ENST00000462673 EZH2Q15910 746 aaKnown RBP10.1□□□□□ -0.79
USP4-207ENST00000462673 DEFB132Q7Z7B7 95 aa10.1□□□□□ -0.79
USP4-207ENST00000462673 NPM2Q86SE8 214 aaKnown RBP10.1□□□□□ -0.79
USP4-207ENST00000462673 IL17REQ8NFR9 667 aa10.1□□□□□ -0.79
USP4-207ENST00000462673 CCNL1Q9UK58 526 aaPredicted RBP10.1□□□□□ -0.79
USP4-207ENST00000462673 APAF1O14727 1248 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 ATP6V1AP38606 617 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 HNRNPUQ00839 825 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP4-207ENST00000462673 MCM10Q7L590 875 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 VSIG10Q8N0Z9 540 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 RBM42Q9BTD8 480 aaKnown RBP10.09□□□□□ -0.79
USP4-207ENST00000462673 ATG3Q9NT62 314 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 STK32BQ9NY57 414 aa10.09□□□□□ -0.79
USP4-207ENST00000462673 VIRMAQ69YN4 1812 aaKnown RBP10.08□□□□□ -0.8
USP4-207ENST00000462673 LOC102724428A0A0B4J2F2 783 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 STARD3NLO95772 234 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 SIK1P57059 783 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 CCDC27Q2M243 656 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 CCDC184Q52MB2 194 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 ZNF790Q6PG37 636 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 FLAD1Q8NFF5 587 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 FMNL2Q96PY5 1086 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 PPP4R2Q9NY27 417 aa10.08□□□□□ -0.8
USP4-207ENST00000462673 CEMIPQ8WUJ3 1361 aa10.07□□□□□ -0.8
USP4-207ENST00000462673 PALLDQ8WX93 1383 aa10.07□□□□□ -0.8
USP4-207ENST00000462673 ASAP1Q9ULH1 1129 aa10.07□□□□□ -0.8
USP4-207ENST00000462673 PTCD1O75127 700 aaKnown RBP10.06□□□□□ -0.8
USP4-207ENST00000462673 GNAI1P63096 354 aa10.06□□□□□ -0.8
USP4-207ENST00000462673 WDR63Q8IWG1 891 aa10.06□□□□□ -0.8
USP4-207ENST00000462673 NHSQ6T4R5 1651 aa10.06□□□□□ -0.8
USP4-207ENST00000462673 SBF2Q86WG5 1849 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 SNRPA1P09661 255 aaKnown RBP10.05□□□□□ -0.8
USP4-207ENST00000462673 DCTN1Q14203 1278 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 RC3H1Q5TC82 1133 aaKnown RBP10.05□□□□□ -0.8
USP4-207ENST00000462673 PTF1AQ7RTS3 328 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 PROM2Q8N271 834 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 AK7Q96M32 723 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 CFAP44Q96MT7 982 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 TFCP2L1Q9NZI6 479 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 TSPYL4Q9UJ04 414 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 RRP7AQ9Y3A4 280 aaKnown RBP10.05□□□□□ -0.8
USP4-207ENST00000462673 LAS1LQ9Y4W2 734 aaKnown RBP10.05□□□□□ -0.8
USP4-207ENST00000462673 KDM6AO15550 1401 aaPredicted RBP10.05□□□□□ -0.8
USP4-207ENST00000462673 ZBED9Q6R2W3 1325 aa10.05□□□□□ -0.8
USP4-207ENST00000462673 SLC15A2Q16348 729 aa10.04□□□□□ -0.8
USP4-207ENST00000462673 IFT57Q9NWB7 429 aa10.04□□□□□ -0.8
USP4-207ENST00000462673 SHANK3Q9BYB0 1731 aa10.04□□□□□ -0.8
USP4-207ENST00000462673 EP400Q96L91 3159 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 SLC39A6Q13433 755 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 WWC1Q8IX03 1113 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 DOT1LQ8TEK3 1739 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 SLC16A10Q8TF71 515 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 TRIM35Q9UPQ4 493 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 RTCBQ9Y3I0 505 aaKnown RBP10.03□□□□□ -0.8
USP4-207ENST00000462673 IL16Q14005 1332 aa10.03□□□□□ -0.8
USP4-207ENST00000462673 RGPD3A6NKT7 1758 aaPredicted RBP10.02□□□□□ -0.81
USP4-207ENST00000462673 RGPD4Q7Z3J3 1758 aa10.02□□□□□ -0.81
USP4-207ENST00000462673 SCN11AQ9UI33 1791 aa10.02□□□□□ -0.81
USP4-207ENST00000462673 CHL1O00533 1208 aa10.02□□□□□ -0.81
USP4-207ENST00000462673 TRAPPC3LQ5T215 181 aa10.02□□□□□ -0.81
USP4-207ENST00000462673 MYH16Q9H6N6 1097 aa10.02□□□□□ -0.81
USP4-207ENST00000462673 SOS1Q07889 1333 aaPredicted RBP10.02□□□□□ -0.81
USP4-207ENST00000462673 BTAF1O14981 1849 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 ITGB4P16144 1822 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 A0A087WZG4 1122 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 SSFA2P28290 1259 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 GOLGA2Q08379 1002 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 ZNF496Q96IT1 587 aaPredicted RBP10.01□□□□□ -0.81
USP4-207ENST00000462673 LRRC4BQ9NT99 713 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 SALL2Q9Y467 1007 aaPredicted RBP10.01□□□□□ -0.81
USP4-207ENST00000462673 HEG1Q9ULI3 1381 aa10.01□□□□□ -0.81
USP4-207ENST00000462673 MRC1P22897 1456 aa10□□□□□ -0.81
USP4-207ENST00000462673 TNS1Q9HBL0 1735 aaKnown RBP10□□□□□ -0.81
USP4-207ENST00000462673 HOXB7P09629 217 aa10□□□□□ -0.81
USP4-207ENST00000462673 RFC4P35249 363 aa10□□□□□ -0.81
USP4-207ENST00000462673 EIF4A1P60842 406 aaKnown RBP10□□□□□ -0.81
USP4-207ENST00000462673 R3HDM1Q15032 1099 aaKnown RBP10□□□□□ -0.81
USP4-207ENST00000462673 AKT1S1Q96B36 256 aa10□□□□□ -0.81
USP4-207ENST00000462673 THUMPD2Q9BTF0 503 aaKnown RBP10□□□□□ -0.81
USP4-207ENST00000462673 MIS18AQ9NYP9 233 aa10□□□□□ -0.81
USP4-207ENST00000462673 ZPR1O75312 459 aa9.99□□□□□ -0.81
USP4-207ENST00000462673 RPS6KA4O75676 772 aa9.99□□□□□ -0.81
USP4-207ENST00000462673 CCDC87Q9NVE4 849 aa9.99□□□□□ -0.81
USP4-207ENST00000462673 NOP58Q9Y2X3 529 aaKnown RBP9.99□□□□□ -0.81
USP4-207ENST00000462673 CNTNAP4Q9C0A0 1308 aa9.99□□□□□ -0.81
USP4-207ENST00000462673 ADAMTS7Q9UKP4 1686 aa9.99□□□□□ -0.81
USP4-207ENST00000462673 E9PSI1 815 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms