RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 LTN1O94822 1766 aa12.16□□□□□ -0.46
HDAC9-220ENST00000461409 CDCA8Q53HL2 280 aa12.16□□□□□ -0.46
HDAC9-220ENST00000461409 IP6K1Q92551 441 aa12.16□□□□□ -0.46
HDAC9-220ENST00000461409 SPON1Q9HCB6 807 aa12.16□□□□□ -0.46
HDAC9-220ENST00000461409 PTF1AQ7RTS3 328 aa12.15□□□□□ -0.46
HDAC9-220ENST00000461409 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
HDAC9-220ENST00000461409 TMEM121BQ9BXQ6 578 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-220ENST00000461409 KCNQ2O43526 872 aa12.14□□□□□ -0.47
HDAC9-220ENST00000461409 PPP1R1BQ9UD71 204 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-220ENST00000461409 AMPHP49418 695 aa12.13□□□□□ -0.47
HDAC9-220ENST00000461409 TXNRD1Q16881 649 aa12.13□□□□□ -0.47
HDAC9-220ENST00000461409 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-220ENST00000461409 STK32BQ9NY57 414 aa12.13□□□□□ -0.47
HDAC9-220ENST00000461409 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
HDAC9-220ENST00000461409 FAM208AQ9UK61 1670 aaKnown RBP12.13□□□□□ -0.47
HDAC9-220ENST00000461409 MAP3K19Q56UN5 1328 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 HOXC9P31274 260 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 C3orf67Q6ZVT6 689 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 LTV1Q96GA3 475 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-220ENST00000461409 BOLA1Q9Y3E2 137 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 RTL1A6NKG5 1358 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 NHSQ6T4R5 1651 aa12.12□□□□□ -0.47
HDAC9-220ENST00000461409 CLSPNQ9HAW4 1339 aa12.11□□□□□ -0.47
HDAC9-220ENST00000461409 FBXO22Q8NEZ5 403 aa12.11□□□□□ -0.47
HDAC9-220ENST00000461409 ACSBG1Q96GR2 724 aa12.11□□□□□ -0.47
HDAC9-220ENST00000461409 MFRPQ9BY79 579 aa12.1□□□□□ -0.47
HDAC9-220ENST00000461409 SMG6Q86US8 1419 aaKnown RBP12.1□□□□□ -0.47
HDAC9-220ENST00000461409 FYB1O15117 783 aa12.09□□□□□ -0.47
HDAC9-220ENST00000461409 SLC15A2Q16348 729 aa12.09□□□□□ -0.47
HDAC9-220ENST00000461409 DDX54Q8TDD1 881 aaKnown RBP12.09□□□□□ -0.47
HDAC9-220ENST00000461409 CASZ1Q86V15 1759 aa12.08□□□□□ -0.48
HDAC9-220ENST00000461409 HS6ST3Q8IZP7 471 aa12.08□□□□□ -0.48
HDAC9-220ENST00000461409 GGNBP2Q9H3C7 697 aa12.08□□□□□ -0.48
HDAC9-220ENST00000461409 CGNL1Q0VF96 1302 aa12.08□□□□□ -0.48
HDAC9-220ENST00000461409 KIF24Q5T7B8 1368 aa12.07□□□□□ -0.48
HDAC9-220ENST00000461409 ZBTB7AO95365 584 aa12.07□□□□□ -0.48
HDAC9-220ENST00000461409 RRS1Q15050 365 aaKnown RBP12.07□□□□□ -0.48
HDAC9-220ENST00000461409 FBLN1P23142 703 aa12.06□□□□□ -0.48
HDAC9-220ENST00000461409 SLC27A3Q5K4L6 730 aa12.06□□□□□ -0.48
HDAC9-220ENST00000461409 ZCRB1Q8TBF4 217 aaKnown RBP12.06□□□□□ -0.48
HDAC9-220ENST00000461409 PDGFDQ9GZP0 370 aaPredicted RBP12.06□□□□□ -0.48
HDAC9-220ENST00000461409 MTFR1LQ9H019 292 aa12.06□□□□□ -0.48
HDAC9-220ENST00000461409 INSRP06213 1382 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 FLT4P35916 1363 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 BTAF1O14981 1849 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 G3V3G9 751 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 RAPGEF4Q8WZA2 1011 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 PCGF6Q9BYE7 350 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 MEGF6O75095 1541 aa12.05□□□□□ -0.48
HDAC9-220ENST00000461409 NSD3Q9BZ95 1437 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 PTGER2P43116 358 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 PRIM1P49642 420 aaKnown RBP12.04□□□□□ -0.48
HDAC9-220ENST00000461409 NBPF6Q5VWK0 638 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 MICALL2Q8IY33 904 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 MARVELD3Q96A59 401 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 SYTL4Q96C24 671 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-220ENST00000461409 NBPF4Q96M43 638 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 PAPPAQ13219 1627 aa12.04□□□□□ -0.48
HDAC9-220ENST00000461409 KIF20BQ96Q89 1820 aa12.03□□□□□ -0.48
HDAC9-220ENST00000461409 CARD14Q9BXL6 1004 aa12.03□□□□□ -0.48
HDAC9-220ENST00000461409 TATP17735 454 aaPredicted RBP12.02□□□□□ -0.49
HDAC9-220ENST00000461409 HSP90AB2PQ58FF8 381 aa12.02□□□□□ -0.49
HDAC9-220ENST00000461409 LRRC4BQ9NT99 713 aa12.02□□□□□ -0.49
HDAC9-220ENST00000461409 MYOM1P52179 1685 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 YY1P25490 414 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 HMGB2P26583 209 aaKnown RBP12.01□□□□□ -0.49
HDAC9-220ENST00000461409 ZNF827Q17R98 1081 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 USHBP1Q8N6Y0 703 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 PCDH11XQ9BZA7 1347 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 PCDH11YQ9BZA8 1340 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 KAT6BQ8WYB5 2073 aa12.01□□□□□ -0.49
HDAC9-220ENST00000461409 SLC16A10Q8TF71 515 aa12□□□□□ -0.49
HDAC9-220ENST00000461409 TFCP2L1Q9NZI6 479 aa12□□□□□ -0.49
HDAC9-220ENST00000461409 NSD2O96028 1365 aa12□□□□□ -0.49
HDAC9-220ENST00000461409 DOT1LQ8TEK3 1739 aa12□□□□□ -0.49
HDAC9-220ENST00000461409 PPM1GO15355 546 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-220ENST00000461409 ARXQ96QS3 562 aa11.99□□□□□ -0.49
HDAC9-220ENST00000461409 FHDC1Q9C0D6 1143 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-220ENST00000461409 CCNL1Q9UK58 526 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-220ENST00000461409 EMILIN1Q9Y6C2 1016 aa11.99□□□□□ -0.49
HDAC9-220ENST00000461409 RGPD2P0DJD1 1756 aa11.99□□□□□ -0.49
HDAC9-220ENST00000461409 SHANK3Q9BYB0 1731 aa11.98□□□□□ -0.49
HDAC9-220ENST00000461409 MAP3K5Q99683 1374 aa11.98□□□□□ -0.49
HDAC9-220ENST00000461409 EMP3P54852 163 aa11.98□□□□□ -0.49
HDAC9-220ENST00000461409 EIF4G2P78344 907 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC9-220ENST00000461409 POLR3GLQ9BT43 218 aa11.98□□□□□ -0.49
HDAC9-220ENST00000461409 WASHC2AQ641Q2 1341 aa11.97□□□□□ -0.49
HDAC9-220ENST00000461409 POLD1P28340 1107 aa11.97□□□□□ -0.49
HDAC9-220ENST00000461409 SPNS2Q8IVW8 549 aa11.97□□□□□ -0.49
HDAC9-220ENST00000461409 SYT17Q9BSW7 474 aa11.97□□□□□ -0.49
HDAC9-220ENST00000461409 NCAPD2Q15021 1401 aa11.96□□□□□ -0.49
HDAC9-220ENST00000461409 PNPLA7Q6ZV29 1317 aa11.96□□□□□ -0.49
HDAC9-220ENST00000461409 KCNQ4P56696 695 aa11.96□□□□□ -0.49
HDAC9-220ENST00000461409 MMRN1Q13201 1228 aa11.96□□□□□ -0.49
HDAC9-220ENST00000461409 CCER1Q8TC90 406 aaPredicted RBP11.96□□□□□ -0.49
HDAC9-220ENST00000461409 SPG7Q9UQ90 795 aa11.96□□□□□ -0.49
HDAC9-220ENST00000461409 LY75O60449 1722 aa11.95□□□□□ -0.5
HDAC9-220ENST00000461409 QSER1Q2KHR3 1735 aa11.95□□□□□ -0.5
HDAC9-220ENST00000461409 ANKRD26Q9UPS8 1709 aa11.95□□□□□ -0.5
HDAC9-220ENST00000461409 CYP27B1O15528 508 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms