RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	RRS1	Q15050	365 aa	Known RBP	11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	AEBP1	Q8IUX7	1158 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	SNX21	Q969T3	373 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	COG3	Q96JB2	828 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	IL17RA	Q96F46	866 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	AK9	Q5TCS8	1911 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	FAM83G	A6ND36	823 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	AXIN2	Q9Y2T1	843 aa		11.11	□□□□□ -0.63
SYNE1-215	ENST00000460912	HMOX1	P09601	288 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	CHD1L	Q86WJ1	897 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	CEMIP	Q8WUJ3	1361 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	FOXO3	O43524	673 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	CASZ1	Q86V15	1759 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	NUTM2F	A1L443	756 aa		11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	FRAT2	O75474	233 aa	Predicted RBP	11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	CALD1	Q05682	793 aa	Known RBP	11.1	□□□□□ -0.63
SYNE1-215	ENST00000460912	BCL9L	Q86UU0	1499 aa		11.09	□□□□□ -0.63
SYNE1-215	ENST00000460912	IPO8	O15397	1037 aa	Known RBP	11.09	□□□□□ -0.63
SYNE1-215	ENST00000460912	GC	P02774	474 aa		11.09	□□□□□ -0.63
SYNE1-215	ENST00000460912	GCC1	Q96CN9	775 aa		11.09	□□□□□ -0.63
SYNE1-215	ENST00000460912	PODXL2	Q9NZ53	605 aa		11.09	□□□□□ -0.63
SYNE1-215	ENST00000460912	KCNH5	Q8NCM2	988 aa		11.08	□□□□□ -0.63
SYNE1-215	ENST00000460912	GSPT1	P15170	499 aa	Known RBP	11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	PSME1	Q06323	249 aa		11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	NGDN	Q8NEJ9	315 aa	Known RBP	11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	CERK	Q8TCT0	537 aa		11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	DCTPP1	Q9H773	170 aa		11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	GSE1	Q14687	1217 aa		11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	TAF1L	Q8IZX4	1826 aa		11.08	□□□□□ -0.64
SYNE1-215	ENST00000460912	TWISTNB	Q3B726	338 aa	Predicted RBP	11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	CLEC17A	Q6ZS10	378 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	ITPRIP	Q8IWB1	547 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	HSP90AB2P	Q58FF8	381 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	FTSJ3	Q8IY81	847 aa	Known RBP	11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	KCP	Q6ZWJ8	1503 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	CANX	P27824	592 aa	Known RBP	11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	LMOD3	Q0VAK6	560 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	ERBB3	P21860	1342 aa		11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	TNS1	Q9HBL0	1735 aa	Known RBP	11.07	□□□□□ -0.64
SYNE1-215	ENST00000460912	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.06	□□□□□ -0.64
SYNE1-215	ENST00000460912	FSD2	A1L4K1	749 aa		11.06	□□□□□ -0.64
SYNE1-215	ENST00000460912	ABTB2	Q8N961	1025 aa		11.06	□□□□□ -0.64
SYNE1-215	ENST00000460912	PTPRC	P08575	1304 aa		11.06	□□□□□ -0.64
SYNE1-215	ENST00000460912	HEG1	Q9ULI3	1381 aa		11.06	□□□□□ -0.64
SYNE1-215	ENST00000460912	ANKRD44	Q8N8A2	993 aa		11.05	□□□□□ -0.64
SYNE1-215	ENST00000460912	PLEKHM2	Q8IWE5	1019 aa		11.05	□□□□□ -0.64
SYNE1-215	ENST00000460912	C22orf23	Q9BZE7	217 aa		11.05	□□□□□ -0.64
SYNE1-215	ENST00000460912	KDM6A	O15550	1401 aa	Predicted RBP	11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	HTATSF1	O43719	755 aa	Known RBP	11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	DCTN1	Q14203	1278 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	EYA1	Q99502	592 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	OSBPL3	Q9H4L5	887 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	BCL9	O00512	1426 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	BCOR	Q6W2J9	1755 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	CD2BP2	O95400	341 aa	Known RBP	11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	KRT24	Q2M2I5	525 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	CEP85	Q6P2H3	762 aa		11.04	□□□□□ -0.64
SYNE1-215	ENST00000460912	SOS1	Q07889	1333 aa	Predicted RBP	11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	NLRP6	P59044	892 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	MTHFSD	Q2M296	383 aa	Known RBP	11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	ATRN	O75882	1429 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	COL24A1	Q17RW2	1714 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	QSER1	Q2KHR3	1735 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	TNS2	Q63HR2	1409 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	BABAM1	Q9NWV8	329 aa		11.03	□□□□□ -0.64
SYNE1-215	ENST00000460912	SULT6B1	Q6IMI4	303 aa		11.02	□□□□□ -0.64
SYNE1-215	ENST00000460912	XPC	Q01831	940 aa	Predicted RBP	11.02	□□□□□ -0.65
SYNE1-215	ENST00000460912	TBC1D9	Q6ZT07	1266 aa		11.02	□□□□□ -0.65
SYNE1-215	ENST00000460912	API5	Q9BZZ5	524 aa	Known RBP	11.02	□□□□□ -0.65
SYNE1-215	ENST00000460912	NBPF6	Q5VWK0	638 aa		11.02	□□□□□ -0.65
SYNE1-215	ENST00000460912	NBPF4	Q96M43	638 aa		11.02	□□□□□ -0.65
SYNE1-215	ENST00000460912	RTL5	Q5HYW3	569 aa	Predicted RBP	11.01	□□□□□ -0.65
SYNE1-215	ENST00000460912	DDX60	Q8IY21	1712 aa	Known RBP	11.01	□□□□□ -0.65
SYNE1-215	ENST00000460912	BTAF1	O14981	1849 aa		11.01	□□□□□ -0.65
SYNE1-215	ENST00000460912	ANKRD36C	Q5JPF3	1778 aa		11.01	□□□□□ -0.65
SYNE1-215	ENST00000460912	CYP2E1	P05181	493 aa	Predicted RBP	11	□□□□□ -0.65
SYNE1-215	ENST00000460912	ARFGEF2	Q9Y6D5	1785 aa		11	□□□□□ -0.65
SYNE1-215	ENST00000460912	JCAD	Q9P266	1359 aa		11	□□□□□ -0.65
SYNE1-215	ENST00000460912	WDR17	Q8IZU2	1322 aa		11	□□□□□ -0.65
SYNE1-215	ENST00000460912	TTC22	Q5TAA0	569 aa		10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	MCM10	Q7L590	875 aa		10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	C1orf115	Q9H7X2	142 aa		10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	LNPK	Q9C0E8	428 aa		10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	LRRC59	Q96AG4	307 aa	Known RBP	10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	PKNOX2	Q96KN3	472 aa		10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	CHMP4B	Q9H444	224 aa	Known RBP	10.99	□□□□□ -0.65
SYNE1-215	ENST00000460912	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.98	□□□□□ -0.65
SYNE1-215	ENST00000460912	MAP3K5	Q99683	1374 aa		10.98	□□□□□ -0.65
SYNE1-215	ENST00000460912	BECN1	Q14457	450 aa		10.98	□□□□□ -0.65
SYNE1-215	ENST00000460912	RAB3GAP1	Q15042	981 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	G2E3	Q7L622	706 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	IL27	Q8NEV9	243 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	SPATA31A6	Q5VVP1	1343 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	NUTM2G	Q5VZR2	741 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	IL17RE	Q8NFR9	667 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	LAMB2	P55268	1798 aa		10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	NKX1-1	Q15270	411 aa	Predicted RBP	10.97	□□□□□ -0.65
SYNE1-215	ENST00000460912	USP26	Q9BXU7	913 aa		10.96	□□□□□ -0.65
SYNE1-215	ENST00000460912	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.96	□□□□□ -0.65

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