RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	PNISR	Q8TF01	805 aa	Known RBP	13.64	□□□□□ -0.23
MRPL55-223	ENST00000459783	MRS2	Q9HD23	443 aa		13.64	□□□□□ -0.23
MRPL55-223	ENST00000459783	KAT6B	Q8WYB5	2073 aa		13.63	□□□□□ -0.23
MRPL55-223	ENST00000459783	R3HDM1	Q15032	1099 aa	Known RBP	13.63	□□□□□ -0.23
MRPL55-223	ENST00000459783	WDR43	Q15061	677 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
MRPL55-223	ENST00000459783	NFE2L2	Q16236	605 aa		13.63	□□□□□ -0.23
MRPL55-223	ENST00000459783	SLC39A6	Q13433	755 aa		13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	ITPK1	Q13572	414 aa		13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	THUMPD2	Q9BTF0	503 aa	Known RBP	13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	CCNL1	Q9UK58	526 aa	Predicted RBP	13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	RRP7A	Q9Y3A4	280 aa	Known RBP	13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	KCP	Q6ZWJ8	1503 aa		13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	SIPA1L3	O60292	1781 aa	Predicted RBP	13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	VIRMA	Q69YN4	1812 aa	Known RBP	13.62	□□□□□ -0.23
MRPL55-223	ENST00000459783	LOC102724428	A0A0B4J2F2	783 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	TMPO	P42166	694 aa	Known RBP	13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	SIK1	P57059	783 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	SLC27A3	Q5K4L6	730 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	SMARCC1	Q92922	1105 aa	Predicted RBP	13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	AKT1S1	Q96B36	256 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	RUNDC1	Q96C34	613 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	MAPK8IP3	Q9UPT6	1336 aa		13.61	□□□□□ -0.23
MRPL55-223	ENST00000459783	KCNQ3	O43525	872 aa		13.6	□□□□□ -0.23
MRPL55-223	ENST00000459783	AMIGO3	Q86WK7	504 aa		13.6	□□□□□ -0.23
MRPL55-223	ENST00000459783	LINC00116	Q8NCU8	138 aa		13.6	□□□□□ -0.23
MRPL55-223	ENST00000459783	DLG5	Q8TDM6	1919 aa		13.6	□□□□□ -0.23
MRPL55-223	ENST00000459783	HTATSF1	O43719	755 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-223	ENST00000459783	SLC15A2	Q16348	729 aa		13.59	□□□□□ -0.23
MRPL55-223	ENST00000459783	TRIM35	Q9UPQ4	493 aa		13.59	□□□□□ -0.23
MRPL55-223	ENST00000459783	SENP3-EIF4A1	A0A087X0R7	540 aa		13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	PTCD1	O75127	700 aa	Known RBP	13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	RIPK4	P57078	832 aa		13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	SMIM5	Q71RC9	77 aa		13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	PNN	Q9H307	717 aa	Known RBP	13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	C5	P01031	1676 aa		13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	TJP1	Q07157	1748 aa		13.58	□□□□□ -0.24
MRPL55-223	ENST00000459783	APAF1	O14727	1248 aa		13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	TEF	Q10587	303 aa		13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	DIEXF	Q68CQ4	756 aa	Known RBP	13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	RBM42	Q9BTD8	480 aa	Known RBP	13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	UBR2	Q8IWV8	1755 aa		13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	TAF1L	Q8IZX4	1826 aa		13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	CIC	Q96RK0	1608 aa	Predicted RBP	13.57	□□□□□ -0.24
MRPL55-223	ENST00000459783	ZNF831	Q5JPB2	1677 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	C4B	P0C0L5	1744 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	CASZ1	Q86V15	1759 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	TUBGCP6	Q96RT7	1819 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	ATP6V1A	P38606	617 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	NEUROD2	Q15784	382 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	NBPF14	Q5TI25	921 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	RTF1	Q92541	710 aa	Known RBP	13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	ZNF496	Q96IT1	587 aa	Predicted RBP	13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	STK32B	Q9NY57	414 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	MIS18A	Q9NYP9	233 aa		13.56	□□□□□ -0.24
MRPL55-223	ENST00000459783	NEFM	P07197	916 aa		13.55	□□□□□ -0.24
MRPL55-223	ENST00000459783	ZNF790	Q6PG37	636 aa		13.55	□□□□□ -0.24
MRPL55-223	ENST00000459783	DNAJC10	Q8IXB1	793 aa		13.55	□□□□□ -0.24
MRPL55-223	ENST00000459783	MIER1	Q8N108	512 aa		13.55	□□□□□ -0.24
MRPL55-223	ENST00000459783	PNPLA7	Q6ZV29	1317 aa		13.55	□□□□□ -0.24
MRPL55-223	ENST00000459783	COL5A3	P25940	1745 aa	Predicted RBP	13.54	□□□□□ -0.24
MRPL55-223	ENST00000459783	BTBD11	A6QL63	1104 aa		13.54	□□□□□ -0.24
MRPL55-223	ENST00000459783	PRAMEF22	A3QJZ6	481 aa		13.53	□□□□□ -0.24
MRPL55-223	ENST00000459783	TAF7	Q15545	349 aa	Predicted RBP	13.53	□□□□□ -0.24
MRPL55-223	ENST00000459783	FAM9B	Q8IZU0	186 aa		13.53	□□□□□ -0.24
MRPL55-223	ENST00000459783	KDM3B	Q7LBC6	1761 aa		13.53	□□□□□ -0.24
MRPL55-223	ENST00000459783	HEG1	Q9ULI3	1381 aa		13.52	□□□□□ -0.25
MRPL55-223	ENST00000459783	QSER1	Q2KHR3	1735 aa		13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	CNTNAP4	Q9C0A0	1308 aa		13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	CCER2	I3L3R5	266 aa		13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	CYP19A1	P11511	503 aa	Predicted RBP	13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	INTS5	Q6P9B9	1019 aa	Known RBP	13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	COL23A1	Q86Y22	540 aa	Predicted RBP	13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	TFCP2L1	Q9NZI6	479 aa		13.51	□□□□□ -0.25
MRPL55-223	ENST00000459783	UBR3	Q6ZT12	1888 aa		13.5	□□□□□ -0.25
MRPL55-223	ENST00000459783	CRKL	P46109	303 aa	Known RBP	13.5	□□□□□ -0.25
MRPL55-223	ENST00000459783	TTC5	Q8N0Z6	440 aa		13.5	□□□□□ -0.25
MRPL55-223	ENST00000459783	VSIG10	Q8N0Z9	540 aa		13.5	□□□□□ -0.25
MRPL55-223	ENST00000459783	MYH14	Q7Z406	1995 aa	Known RBP	13.5	□□□□□ -0.25
MRPL55-223	ENST00000459783	GNPAT	O15228	680 aa		13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	ZBTB7A	O95365	584 aa		13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	EIF4A1	P60842	406 aa	Known RBP	13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	LMOD3	Q0VAK6	560 aa		13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	RC3H1	Q5TC82	1133 aa	Known RBP	13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	AK7	Q96M32	723 aa		13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	FMNL2	Q96PY5	1086 aa		13.49	□□□□□ -0.25
MRPL55-223	ENST00000459783	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	CHL1	O00533	1208 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	PHF14	O94880	888 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	ZNF853	P0CG23	659 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	SGIP1	Q9BQI5	828 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	ZBTB1	Q9Y2K1	713 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	USP16	Q9Y5T5	823 aa		13.48	□□□□□ -0.25
MRPL55-223	ENST00000459783	RPS6KA4	O75676	772 aa		13.47	□□□□□ -0.25
MRPL55-223	ENST00000459783	KRT24	Q2M2I5	525 aa		13.47	□□□□□ -0.25
MRPL55-223	ENST00000459783	CCDC87	Q9NVE4	849 aa		13.47	□□□□□ -0.25
MRPL55-223	ENST00000459783	LRP5	O75197	1615 aa		13.46	□□□□□ -0.25
MRPL55-223	ENST00000459783	SOS1	Q07889	1333 aa	Predicted RBP	13.46	□□□□□ -0.25
MRPL55-223	ENST00000459783	SSFA2	P28290	1259 aa		13.46	□□□□□ -0.25
MRPL55-223	ENST00000459783	PTGER2	P43116	358 aa		13.46	□□□□□ -0.25

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