RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 IFT57Q9NWB7 429 aa11.38□□□□□ -0.59
RIF1-208ENST00000457745 BCL9LQ86UU0 1499 aa11.38□□□□□ -0.59
RIF1-208ENST00000457745 ELL2O00472 640 aaPredicted RBP11.37□□□□□ -0.59
RIF1-208ENST00000457745 RNMTO43148 476 aaKnown RBP11.37□□□□□ -0.59
RIF1-208ENST00000457745 CFAP44Q96MT7 982 aa11.37□□□□□ -0.59
RIF1-208ENST00000457745 CARD10Q9BWT7 1032 aa11.37□□□□□ -0.59
RIF1-208ENST00000457745 USP35Q9P2H5 1018 aa11.37□□□□□ -0.59
RIF1-208ENST00000457745 MRC1P22897 1456 aa11.37□□□□□ -0.59
RIF1-208ENST00000457745 C5P01031 1676 aa11.36□□□□□ -0.59
RIF1-208ENST00000457745 NEFMP07197 916 aa11.36□□□□□ -0.59
RIF1-208ENST00000457745 PHKG2P15735 406 aa11.36□□□□□ -0.59
RIF1-208ENST00000457745 PLEKHO1Q53GL0 409 aaPredicted RBP11.36□□□□□ -0.59
RIF1-208ENST00000457745 SSH1Q8WYL5 1049 aa11.36□□□□□ -0.59
RIF1-208ENST00000457745 MYH16Q9H6N6 1097 aa11.36□□□□□ -0.59
RIF1-208ENST00000457745 VAMP4O75379 141 aa11.35□□□□□ -0.59
RIF1-208ENST00000457745 TATP17735 454 aaPredicted RBP11.35□□□□□ -0.59
RIF1-208ENST00000457745 LMOD3Q0VAK6 560 aa11.35□□□□□ -0.59
RIF1-208ENST00000457745 AKAP4Q5JQC9 854 aa11.35□□□□□ -0.59
RIF1-208ENST00000457745 EXOC6Q8TAG9 804 aa11.35□□□□□ -0.59
RIF1-208ENST00000457745 RAPGEF4Q8WZA2 1011 aa11.35□□□□□ -0.59
RIF1-208ENST00000457745 RLBP1P12271 317 aa11.34□□□□□ -0.59
RIF1-208ENST00000457745 GNAI1P63096 354 aa11.34□□□□□ -0.59
RIF1-208ENST00000457745 CRBNQ96SW2 442 aa11.34□□□□□ -0.59
RIF1-208ENST00000457745 PAPPAQ13219 1627 aa11.34□□□□□ -0.59
RIF1-208ENST00000457745 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.33□□□□□ -0.6
RIF1-208ENST00000457745 HTATSF1O43719 755 aaKnown RBP11.33□□□□□ -0.6
RIF1-208ENST00000457745 EVA1CP58658 441 aa11.33□□□□□ -0.6
RIF1-208ENST00000457745 AMOTQ4VCS5 1084 aa11.33□□□□□ -0.6
RIF1-208ENST00000457745 SPATA31A1Q5TZJ5 1347 aa11.33□□□□□ -0.6
RIF1-208ENST00000457745 PRAMEF22A3QJZ6 481 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 IL2RBP14784 551 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 RTF1Q92541 710 aaKnown RBP11.32□□□□□ -0.6
RIF1-208ENST00000457745 C8orf37Q96NL8 207 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 TSPYL4Q9UJ04 414 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 RGS12O14924 1447 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 ITGB4P16144 1822 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 SPATA31A5Q5VU36 1347 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 SPATA31A7Q8IWB4 1347 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 DOT1LQ8TEK3 1739 aa11.32□□□□□ -0.6
RIF1-208ENST00000457745 SLC39A6Q13433 755 aa11.31□□□□□ -0.6
RIF1-208ENST00000457745 MRPL50Q8N5N7 158 aaKnown RBP11.31□□□□□ -0.6
RIF1-208ENST00000457745 PANK1Q8TE04 598 aa11.31□□□□□ -0.6
RIF1-208ENST00000457745 THSD7AQ9UPZ6 1657 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 TNS2Q63HR2 1409 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 C19orf67A6NJJ6 358 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 GABBR2O75899 941 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 TAF7Q15545 349 aaPredicted RBP11.3□□□□□ -0.6
RIF1-208ENST00000457745 TWISTNBQ3B726 338 aaPredicted RBP11.3□□□□□ -0.6
RIF1-208ENST00000457745 C1orf141Q5JVX7 400 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 ZCRB1Q8TBF4 217 aaKnown RBP11.3□□□□□ -0.6
RIF1-208ENST00000457745 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.3□□□□□ -0.6
RIF1-208ENST00000457745 SPG7Q9UQ90 795 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 UBR2Q8IWV8 1755 aa11.3□□□□□ -0.6
RIF1-208ENST00000457745 HEG1Q9ULI3 1381 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 EIF4A1P60842 406 aaKnown RBP11.29□□□□□ -0.6
RIF1-208ENST00000457745 CALD1Q05682 793 aaKnown RBP11.29□□□□□ -0.6
RIF1-208ENST00000457745 LHX8Q68G74 356 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 G2E3Q7L622 706 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 IFNL2Q8IZJ0 200 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 DDX54Q8TDD1 881 aaKnown RBP11.29□□□□□ -0.6
RIF1-208ENST00000457745 SPATA31A6Q5VVP1 1343 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 KCPQ6ZWJ8 1503 aa11.29□□□□□ -0.6
RIF1-208ENST00000457745 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
RIF1-208ENST00000457745 NEFLP07196 543 aa11.28□□□□□ -0.6
RIF1-208ENST00000457745 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
RIF1-208ENST00000457745 FNBP4Q8N3X1 1017 aaPredicted RBP11.28□□□□□ -0.6
RIF1-208ENST00000457745 NECTIN2Q92692 538 aa11.28□□□□□ -0.6
RIF1-208ENST00000457745 FRAT1Q92837 279 aaPredicted RBP11.28□□□□□ -0.6
RIF1-208ENST00000457745 SLC52A2Q9HAB3 445 aa11.28□□□□□ -0.6
RIF1-208ENST00000457745 SMC4Q9NTJ3 1288 aa11.28□□□□□ -0.6
RIF1-208ENST00000457745 NOB1Q9ULX3 412 aaKnown RBP11.28□□□□□ -0.6
RIF1-208ENST00000457745 B4GALNT3Q6L9W6 998 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 UNC5CLQ8IV45 518 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 NFATC2IPQ8NCF5 419 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 CLUAP1Q96AJ1 413 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 NGLY1Q96IV0 654 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 FBXO3Q9UK99 471 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 AFF2P51816 1311 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 PCDH11XQ9BZA7 1347 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 PCDH11YQ9BZA8 1340 aa11.27□□□□□ -0.61
RIF1-208ENST00000457745 ANXA1P04083 346 aa11.26□□□□□ -0.61
RIF1-208ENST00000457745 TRIM27P14373 513 aa11.26□□□□□ -0.61
RIF1-208ENST00000457745 MARCH10Q8NA82 808 aaPredicted RBP11.26□□□□□ -0.61
RIF1-208ENST00000457745 DCAF5Q96JK2 942 aa11.26□□□□□ -0.61
RIF1-208ENST00000457745 COG6Q9Y2V7 657 aa11.26□□□□□ -0.61
RIF1-208ENST00000457745 ATRNO75882 1429 aa11.26□□□□□ -0.61
RIF1-208ENST00000457745 BTBD11A6QL63 1104 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 CT47B1P0C2W7 299 aaPredicted RBP11.25□□□□□ -0.61
RIF1-208ENST00000457745 TEFQ10587 303 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 VPS72Q15906 364 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 FAM98CQ17RN3 349 aaKnown RBP11.25□□□□□ -0.61
RIF1-208ENST00000457745 PROSER3Q2NL68 480 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 CHADLQ6NUI6 762 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 PTF1AQ7RTS3 328 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 ZNF496Q96IT1 587 aaPredicted RBP11.25□□□□□ -0.61
RIF1-208ENST00000457745 LAMB4A4D0S4 1761 aa11.25□□□□□ -0.61
RIF1-208ENST00000457745 ALDH1L2Q3SY69 923 aa11.24□□□□□ -0.61
RIF1-208ENST00000457745 USP21Q9UK80 565 aa11.24□□□□□ -0.61
RIF1-208ENST00000457745 TJP1Q07157 1748 aa11.23□□□□□ -0.61
RIF1-208ENST00000457745 BARGINQ6ZT62 677 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms