RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 CCDC85CA6NKD9 419 aa23.5■■□□□ 1.35
SF3B4-202ENST00000457312 IP6K1Q92551 441 aa23.5■■□□□ 1.35
SF3B4-202ENST00000457312 GNPATO15228 680 aa23.49■■□□□ 1.35
SF3B4-202ENST00000457312 WBP1LQ9NX94 342 aa23.49■■□□□ 1.35
SF3B4-202ENST00000457312 PIM2Q9P1W9 311 aa23.49■■□□□ 1.35
SF3B4-202ENST00000457312 HSPA8P11142 646 aaKnown RBP23.48■■□□□ 1.35
SF3B4-202ENST00000457312 DALRD3Q5D0E6 543 aaKnown RBP23.48■■□□□ 1.35
SF3B4-202ENST00000457312 MPRIPQ6WCQ1 1025 aa23.48■■□□□ 1.35
SF3B4-202ENST00000457312 SMARCC1Q92922 1105 aaPredicted RBP23.48■■□□□ 1.35
SF3B4-202ENST00000457312 SBNO2Q9Y2G9 1366 aa23.48■■□□□ 1.35
SF3B4-202ENST00000457312 RASSF7Q02833 373 aa23.46■■□□□ 1.35
SF3B4-202ENST00000457312 POTECB2RU33 542 aa23.45■■□□□ 1.34
SF3B4-202ENST00000457312 CD163L1Q9NR16 1453 aa23.44■■□□□ 1.34
SF3B4-202ENST00000457312 VEGFBP49765 207 aa23.43■■□□□ 1.34
SF3B4-202ENST00000457312 NLGN1Q8N2Q7 840 aa23.43■■□□□ 1.34
SF3B4-202ENST00000457312 CGNL1Q0VF96 1302 aa23.42■■□□□ 1.34
SF3B4-202ENST00000457312 LOC102724428A0A0B4J2F2 783 aa23.42■■□□□ 1.34
SF3B4-202ENST00000457312 SIK1P57059 783 aa23.42■■□□□ 1.34
SF3B4-202ENST00000457312 TMF1P82094 1093 aa23.42■■□□□ 1.34
SF3B4-202ENST00000457312 PCDH11XQ9BZA7 1347 aa23.41■■□□□ 1.34
SF3B4-202ENST00000457312 PCDH11YQ9BZA8 1340 aa23.41■■□□□ 1.34
SF3B4-202ENST00000457312 ITPK1Q13572 414 aa23.41■■□□□ 1.34
SF3B4-202ENST00000457312 CHADLQ6NUI6 762 aa23.39■■□□□ 1.33
SF3B4-202ENST00000457312 LMNB1P20700 586 aa23.38■■□□□ 1.33
SF3B4-202ENST00000457312 PIGBQ92521 554 aa23.38■■□□□ 1.33
SF3B4-202ENST00000457312 PARP3Q9Y6F1 533 aa23.38■■□□□ 1.33
SF3B4-202ENST00000457312 GYS1P13807 737 aa23.37■■□□□ 1.33
SF3B4-202ENST00000457312 HOXC9P31274 260 aa23.37■■□□□ 1.33
SF3B4-202ENST00000457312 COL5A3P25940 1745 aaPredicted RBP23.36■■□□□ 1.33
SF3B4-202ENST00000457312 DICER1Q9UPY3 1922 aaKnown RBP23.36■■□□□ 1.33
SF3B4-202ENST00000457312 CHRNA5P30532 468 aa23.36■■□□□ 1.33
SF3B4-202ENST00000457312 DLEC1Q9Y238 1755 aa23.36■■□□□ 1.33
SF3B4-202ENST00000457312 PASKQ96RG2 1323 aa23.35■■□□□ 1.33
SF3B4-202ENST00000457312 POTEIP0CG38 1075 aa23.35■■□□□ 1.33
SF3B4-202ENST00000457312 POTEJP0CG39 1038 aa23.35■■□□□ 1.33
SF3B4-202ENST00000457312 USHBP1Q8N6Y0 703 aa23.35■■□□□ 1.33
SF3B4-202ENST00000457312 MAP3K19Q56UN5 1328 aa23.34■■□□□ 1.33
SF3B4-202ENST00000457312 EDC4Q6P2E9 1401 aaKnown RBP23.34■■□□□ 1.33
SF3B4-202ENST00000457312 THSD7BQ9C0I4 1608 aa23.34■■□□□ 1.33
SF3B4-202ENST00000457312 CYP27B1O15528 508 aa23.33■■□□□ 1.33
SF3B4-202ENST00000457312 NBPF6Q5VWK0 638 aa23.33■■□□□ 1.33
SF3B4-202ENST00000457312 RAPGEF4Q8WZA2 1011 aa23.33■■□□□ 1.33
SF3B4-202ENST00000457312 NBPF4Q96M43 638 aa23.33■■□□□ 1.33
SF3B4-202ENST00000457312 TRAPPC3LQ5T215 181 aa23.32■■□□□ 1.32
SF3B4-202ENST00000457312 ATP6V1AP38606 617 aa23.31■■□□□ 1.32
SF3B4-202ENST00000457312 RTCBQ9Y3I0 505 aaKnown RBP23.31■■□□□ 1.32
SF3B4-202ENST00000457312 ZNF831Q5JPB2 1677 aa23.31■■□□□ 1.32
SF3B4-202ENST00000457312 MYH14Q7Z406 1995 aaKnown RBP23.31■■□□□ 1.32
SF3B4-202ENST00000457312 TATP17735 454 aaPredicted RBP23.3■■□□□ 1.32
SF3B4-202ENST00000457312 ARHGEF1Q92888 912 aaKnown RBP23.3■■□□□ 1.32
SF3B4-202ENST00000457312 KDRP35968 1356 aa23.29■■□□□ 1.32
SF3B4-202ENST00000457312 ADRA2BP18089 450 aa23.28■■□□□ 1.32
SF3B4-202ENST00000457312 CFAP44Q96MT7 982 aa23.28■■□□□ 1.32
SF3B4-202ENST00000457312 RTL1A6NKG5 1358 aa23.27■■□□□ 1.32
SF3B4-202ENST00000457312 RAB3GAP2Q9H2M9 1393 aa23.27■■□□□ 1.32
SF3B4-202ENST00000457312 TMEM88BA6NKF7 163 aa23.27■■□□□ 1.32
SF3B4-202ENST00000457312 DDR1Q08345 913 aa23.27■■□□□ 1.32
SF3B4-202ENST00000457312 ASAP1Q9ULH1 1129 aa23.27■■□□□ 1.32
SF3B4-202ENST00000457312 AMPHP49418 695 aa23.26■■□□□ 1.31
SF3B4-202ENST00000457312 MAP2K1Q02750 393 aaPredicted RBP23.26■■□□□ 1.31
SF3B4-202ENST00000457312 NFKBIEO00221 500 aa23.24■■□□□ 1.31
SF3B4-202ENST00000457312 DPY19L2Q6NUT2 758 aa23.24■■□□□ 1.31
SF3B4-202ENST00000457312 LTBP1Q14766 1721 aa23.24■■□□□ 1.31
SF3B4-202ENST00000457312 AFDNP55196 1824 aaKnown RBP23.24■■□□□ 1.31
SF3B4-202ENST00000457312 RASSF10A6NK89 507 aa23.23■■□□□ 1.31
SF3B4-202ENST00000457312 FBLN1P23142 703 aa23.23■■□□□ 1.31
SF3B4-202ENST00000457312 RFC4P35249 363 aa23.23■■□□□ 1.31
SF3B4-202ENST00000457312 A0A1W2PP64 1363 aa23.22■■□□□ 1.31
SF3B4-202ENST00000457312 SMG6Q86US8 1419 aaKnown RBP23.22■■□□□ 1.31
SF3B4-202ENST00000457312 SCN4AP35499 1836 aa23.22■■□□□ 1.31
SF3B4-202ENST00000457312 FER1L6Q2WGJ9 1857 aa23.21■■□□□ 1.31
SF3B4-202ENST00000457312 CASP8AP2Q9UKL3 1982 aa23.21■■□□□ 1.31
SF3B4-202ENST00000457312 ADAMTSL1Q8N6G6 1762 aa23.2■■□□□ 1.3
SF3B4-202ENST00000457312 CNTNAP4Q9C0A0 1308 aa23.2■■□□□ 1.3
SF3B4-202ENST00000457312 WDR33Q9C0J8 1336 aaKnown RBP23.2■■□□□ 1.3
SF3B4-202ENST00000457312 NKX1-1Q15270 411 aaPredicted RBP23.2■■□□□ 1.3
SF3B4-202ENST00000457312 MCOLN1Q9GZU1 580 aa23.2■■□□□ 1.3
SF3B4-202ENST00000457312 TMOD3Q9NYL9 352 aa23.2■■□□□ 1.3
SF3B4-202ENST00000457312 PRPF38BQ5VTL8 546 aaKnown RBP23.19■■□□□ 1.3
SF3B4-202ENST00000457312 HDGFL2Q7Z4V5 671 aaPredicted RBP23.19■■□□□ 1.3
SF3B4-202ENST00000457312 LDHDQ86WU2 507 aa23.19■■□□□ 1.3
SF3B4-202ENST00000457312 ITGBL1O95965 494 aaPredicted RBP23.18■■□□□ 1.3
SF3B4-202ENST00000457312 FKBP8Q14318 412 aa23.18■■□□□ 1.3
SF3B4-202ENST00000457312 RC3H1Q5TC82 1133 aaKnown RBP23.18■■□□□ 1.3
SF3B4-202ENST00000457312 SLC4A9Q96Q91 983 aa23.18■■□□□ 1.3
SF3B4-202ENST00000457312 ATG3Q9NT62 314 aa23.18■■□□□ 1.3
SF3B4-202ENST00000457312 NRXN2Q9P2S2 1712 aa23.18■■□□□ 1.3
SF3B4-202ENST00000457312 ADAMTS7Q9UKP4 1686 aa23.18■■□□□ 1.3
SF3B4-202ENST00000457312 RPS6KA4O75676 772 aa23.17■■□□□ 1.3
SF3B4-202ENST00000457312 DEFB115Q30KQ5 88 aa23.17■■□□□ 1.3
SF3B4-202ENST00000457312 POLRMTO00411 1230 aaKnown RBP23.16■■□□□ 1.3
SF3B4-202ENST00000457312 SRP68Q9UHB9 627 aaKnown RBP23.16■■□□□ 1.3
SF3B4-202ENST00000457312 USP42Q9H9J4 1324 aaKnown RBP23.14■■□□□ 1.3
SF3B4-202ENST00000457312 DDNO94850 711 aaPredicted RBP23.13■■□□□ 1.29
SF3B4-202ENST00000457312 ERFEQ4G0M1 354 aa23.13■■□□□ 1.29
SF3B4-202ENST00000457312 TMC1Q8TDI8 760 aa23.13■■□□□ 1.29
SF3B4-202ENST00000457312 SLC12A5Q9H2X9 1139 aa23.13■■□□□ 1.29
SF3B4-202ENST00000457312 COG3Q96JB2 828 aa23.12■■□□□ 1.29
SF3B4-202ENST00000457312 RRS1Q15050 365 aaKnown RBP23.11■■□□□ 1.29
SF3B4-202ENST00000457312 TTLL6Q8N841 843 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms