RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SLC26A8Q96RN1 970 aa23.22■■□□□ 1.31
HMGA1-205ENST00000447654 TERF2Q15554 542 aa23.21■■□□□ 1.31
HMGA1-205ENST00000447654 PLCD3Q8N3E9 789 aa23.21■■□□□ 1.31
HMGA1-205ENST00000447654 RNF214Q8ND24 703 aa23.21■■□□□ 1.31
HMGA1-205ENST00000447654 BCL2L13Q9BXK5 485 aa23.21■■□□□ 1.31
HMGA1-205ENST00000447654 ATF7IPQ6VMQ6 1270 aa23.21■■□□□ 1.31
HMGA1-205ENST00000447654 KIAA1524Q8TCG1 905 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 TSR2Q969E8 191 aaKnown RBP23.2■■□□□ 1.3
HMGA1-205ENST00000447654 EMILIN1Q9Y6C2 1016 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 CCDC61Q9Y6R9 512 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 MAP2P11137 1827 aaKnown RBP23.2■■□□□ 1.3
HMGA1-205ENST00000447654 C3P01024 1663 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.2■■□□□ 1.3
HMGA1-205ENST00000447654 ZBTB22O15209 634 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 TRIM27P14373 513 aa23.2■■□□□ 1.3
HMGA1-205ENST00000447654 PAXIP1Q6ZW49 1069 aaPredicted RBP23.2■■□□□ 1.3
HMGA1-205ENST00000447654 EDC4Q6P2E9 1401 aaKnown RBP23.19■■□□□ 1.3
HMGA1-205ENST00000447654 PTPRUQ92729 1446 aa23.19■■□□□ 1.3
HMGA1-205ENST00000447654 ITPRIPQ8IWB1 547 aa23.19■■□□□ 1.3
HMGA1-205ENST00000447654 LNPKQ9C0E8 428 aa23.19■■□□□ 1.3
HMGA1-205ENST00000447654 PLEKHG1Q9ULL1 1385 aa23.19■■□□□ 1.3
HMGA1-205ENST00000447654 ST18O60284 1047 aa23.18■■□□□ 1.3
HMGA1-205ENST00000447654 ZDHHC9Q9Y397 364 aa23.18■■□□□ 1.3
HMGA1-205ENST00000447654 CDC42BPGQ6DT37 1551 aa23.18■■□□□ 1.3
HMGA1-205ENST00000447654 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
HMGA1-205ENST00000447654 IGSF3O75054 1194 aa23.16■■□□□ 1.3
HMGA1-205ENST00000447654 NCBP1Q09161 790 aaKnown RBP23.16■■□□□ 1.3
HMGA1-205ENST00000447654 PKP1Q13835 747 aa23.15■■□□□ 1.3
HMGA1-205ENST00000447654 TTC12Q9H892 705 aaPredicted RBP23.15■■□□□ 1.3
HMGA1-205ENST00000447654 LRRC7Q96NW7 1537 aa23.15■■□□□ 1.3
HMGA1-205ENST00000447654 MON2Q7Z3U7 1717 aa23.15■■□□□ 1.3
HMGA1-205ENST00000447654 IPO8O15397 1037 aaKnown RBP23.14■■□□□ 1.3
HMGA1-205ENST00000447654 ADCY5O95622 1261 aa23.14■■□□□ 1.3
HMGA1-205ENST00000447654 KRT222Q8N1A0 295 aa23.14■■□□□ 1.3
HMGA1-205ENST00000447654 SMC4Q9NTJ3 1288 aa23.14■■□□□ 1.3
HMGA1-205ENST00000447654 FAM177BA6PVY3 158 aa23.14■■□□□ 1.29
HMGA1-205ENST00000447654 NSFL1CQ9UNZ2 370 aaKnown RBP23.14■■□□□ 1.29
HMGA1-205ENST00000447654 RRS1Q15050 365 aaKnown RBP23.13■■□□□ 1.29
HMGA1-205ENST00000447654 YY1AP1Q9H869 796 aa23.13■■□□□ 1.29
HMGA1-205ENST00000447654 AKAP12Q02952 1782 aa23.12■■□□□ 1.29
HMGA1-205ENST00000447654 SMTNL1A8MU46 457 aa23.12■■□□□ 1.29
HMGA1-205ENST00000447654 HMOX1P09601 288 aa23.12■■□□□ 1.29
HMGA1-205ENST00000447654 PHACTR3Q96KR7 559 aa23.12■■□□□ 1.29
HMGA1-205ENST00000447654 GOLGA6L6A8MZA4 724 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 PRKAR2BP31323 418 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 USP25Q9UHP3 1055 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 FER1L4A9Z1Z3 1794 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 KIF18AQ8NI77 898 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 FAM53CQ9NYF3 392 aa23.11■■□□□ 1.29
HMGA1-205ENST00000447654 EXOSC9Q06265 439 aaKnown RBP23.1■■□□□ 1.29
HMGA1-205ENST00000447654 ARHGAP23Q9P227 1491 aa23.1■■□□□ 1.29
HMGA1-205ENST00000447654 FCHSD2O94868 740 aa23.1■■□□□ 1.29
HMGA1-205ENST00000447654 IL13P35225 146 aa23.1■■□□□ 1.29
HMGA1-205ENST00000447654 RGS22Q8NE09 1264 aa23.1■■□□□ 1.29
HMGA1-205ENST00000447654 EFCC1Q9HA90 598 aa23.1■■□□□ 1.29
HMGA1-205ENST00000447654 SLIT1O75093 1534 aa23.09■■□□□ 1.29
HMGA1-205ENST00000447654 KDM4AO75164 1064 aa23.09■■□□□ 1.29
HMGA1-205ENST00000447654 BRD1O95696 1058 aa23.09■■□□□ 1.29
HMGA1-205ENST00000447654 USP26Q9BXU7 913 aa23.09■■□□□ 1.29
HMGA1-205ENST00000447654 AMOTL2Q9Y2J4 779 aa23.08■■□□□ 1.29
HMGA1-205ENST00000447654 TMEM57Q8N5G2 664 aa23.08■■□□□ 1.29
HMGA1-205ENST00000447654 COG3Q96JB2 828 aa23.08■■□□□ 1.29
HMGA1-205ENST00000447654 PAXBP1Q9Y5B6 917 aa23.08■■□□□ 1.29
HMGA1-205ENST00000447654 EID1Q9Y6B2 187 aa23.08■■□□□ 1.29
HMGA1-205ENST00000447654 ACEP12821 1306 aa23.08■■□□□ 1.28
HMGA1-205ENST00000447654 ITSN1Q15811 1721 aa23.08■■□□□ 1.28
HMGA1-205ENST00000447654 CAPN2P17655 700 aa23.07■■□□□ 1.28
HMGA1-205ENST00000447654 MCM2P49736 904 aa23.07■■□□□ 1.28
HMGA1-205ENST00000447654 C17orf53Q8N3J3 647 aaPredicted RBP23.07■■□□□ 1.28
HMGA1-205ENST00000447654 AATKQ6ZMQ8 1374 aa23.06■■□□□ 1.28
HMGA1-205ENST00000447654 ANKRD45Q5TZF3 282 aa23.06■■□□□ 1.28
HMGA1-205ENST00000447654 ZGPATQ8N5A5 531 aaKnown RBP23.06■■□□□ 1.28
HMGA1-205ENST00000447654 IL16Q14005 1332 aa23.05■■□□□ 1.28
HMGA1-205ENST00000447654 CCDC183Q5T5S1 534 aa23.05■■□□□ 1.28
HMGA1-205ENST00000447654 SSH1Q8WYL5 1049 aa23.05■■□□□ 1.28
HMGA1-205ENST00000447654 TOPAZ1Q8N9V7 1692 aa23.05■■□□□ 1.28
HMGA1-205ENST00000447654 CDK12Q9NYV4 1490 aaPredicted RBP23.05■■□□□ 1.28
HMGA1-205ENST00000447654 THUMPD2Q9BTF0 503 aaKnown RBP23.04■■□□□ 1.28
HMGA1-205ENST00000447654 INTS3Q68E01 1043 aaKnown RBP23.04■■□□□ 1.28
HMGA1-205ENST00000447654 ZNF397Q8NF99 534 aaPredicted RBP23.04■■□□□ 1.28
HMGA1-205ENST00000447654 ZFP91Q96JP5 570 aaPredicted RBP23.04■■□□□ 1.28
HMGA1-205ENST00000447654 TTC21BQ7Z4L5 1316 aa23.04■■□□□ 1.28
HMGA1-205ENST00000447654 TMEM87AQ8NBN3 555 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 NOB1Q9ULX3 412 aaKnown RBP23.03■■□□□ 1.28
HMGA1-205ENST00000447654 NRKQ7Z2Y5 1582 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 PLEKHG3A1L390 1219 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 ZBTB7CA1YPR0 619 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 BRPF1P55201 1214 aaPredicted RBP23.03■■□□□ 1.28
HMGA1-205ENST00000447654 ALDH1L2Q3SY69 923 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 TBX22Q9Y458 520 aa23.03■■□□□ 1.28
HMGA1-205ENST00000447654 SLFNL1Q499Z3 407 aa23.01■■□□□ 1.27
HMGA1-205ENST00000447654 INTS4Q96HW7 963 aaKnown RBP23.01■■□□□ 1.27
HMGA1-205ENST00000447654 KCNF1Q9H3M0 494 aa23.01■■□□□ 1.27
HMGA1-205ENST00000447654 THEMISQ8N1K5 641 aaPredicted RBP23■■□□□ 1.27
HMGA1-205ENST00000447654 ZNF428Q96B54 188 aa23■■□□□ 1.27
HMGA1-205ENST00000447654 GEMIN8Q9NWZ8 242 aaKnown RBP23■■□□□ 1.27
HMGA1-205ENST00000447654 PYCARDQ9ULZ3 195 aa23■■□□□ 1.27
HMGA1-205ENST00000447654 TRIM6-TRIM34B2RNG4 842 aa23■■□□□ 1.27
HMGA1-205ENST00000447654 TRIM34Q9BYJ4 488 aa23■■□□□ 1.27
HMGA1-205ENST00000447654 USP6P35125 1406 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 204.7 ms