RNA–Protein interactions for RNA: ENST00000447271.1

PTPN3-205, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 2

Gene PTPN3, Length 587 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-205ENST00000447271 ZNF644Q9H582 1327 aaPredicted RBP8.41□□□□□ -1.06
PTPN3-205ENST00000447271 KRT28Q7Z3Y7 464 aa8.41□□□□□ -1.06
PTPN3-205ENST00000447271 PTCD2Q8WV60 388 aaKnown RBP8.41□□□□□ -1.06
PTPN3-205ENST00000447271 PKD1L2Q7Z442 2459 aa8.41□□□□□ -1.06
PTPN3-205ENST00000447271 C9orf131Q5VYM1 1079 aa8.4□□□□□ -1.06
PTPN3-205ENST00000447271 AXIN2Q9Y2T1 843 aa8.4□□□□□ -1.06
PTPN3-205ENST00000447271 TUBGCP6Q96RT7 1819 aa8.4□□□□□ -1.07
PTPN3-205ENST00000447271 EIF2AK4Q9P2K8 1649 aaKnown RBP8.4□□□□□ -1.07
PTPN3-205ENST00000447271 CCDC144AA2RUR9 1427 aa8.39□□□□□ -1.07
PTPN3-205ENST00000447271 PNPLA7Q6ZV29 1317 aa8.39□□□□□ -1.07
PTPN3-205ENST00000447271 FMN2Q9NZ56 1722 aa8.38□□□□□ -1.07
PTPN3-205ENST00000447271 PARP4Q9UKK3 1724 aaKnown RBP8.38□□□□□ -1.07
PTPN3-205ENST00000447271 ARHGAP27Q6ZUM4 889 aa8.38□□□□□ -1.07
PTPN3-205ENST00000447271 PPARGC1BQ86YN6 1023 aaKnown RBP8.38□□□□□ -1.07
PTPN3-205ENST00000447271 COL26A1Q96A83 441 aa8.38□□□□□ -1.07
PTPN3-205ENST00000447271 SLC52A1Q9NWF4 448 aa8.38□□□□□ -1.07
PTPN3-205ENST00000447271 ARHGEF5Q12774 1597 aa8.37□□□□□ -1.07
PTPN3-205ENST00000447271 VEGFAP15692 232 aaPredicted RBP8.37□□□□□ -1.07
PTPN3-205ENST00000447271 CACNA1GO43497 2377 aa8.36□□□□□ -1.07
PTPN3-205ENST00000447271 LSM11P83369 360 aaKnown RBP eCLIP8.36□□□□□ -1.07
PTPN3-205ENST00000447271 OXER1Q8TDS5 423 aa8.36□□□□□ -1.07
PTPN3-205ENST00000447271 ATP7BP35670 1465 aa8.36□□□□□ -1.07
PTPN3-205ENST00000447271 NRXN3Q9Y4C0 1643 aa8.36□□□□□ -1.07
PTPN3-205ENST00000447271 METP08581 1390 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 NUTM2FA1L443 756 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 PPP1R15BQ5SWA1 713 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 MSL1Q68DK7 614 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 TFCP2L1Q9NZI6 479 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 ARHGEF10O15013 1369 aa8.35□□□□□ -1.07
PTPN3-205ENST00000447271 WDR33Q9C0J8 1336 aaKnown RBP8.34□□□□□ -1.07
PTPN3-205ENST00000447271 CCDC141Q6ZP82 1450 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 CENPBP07199 599 aaPredicted RBP8.34□□□□□ -1.07
PTPN3-205ENST00000447271 PSME1Q06323 249 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 ANKRD13DQ6ZTN6 518 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 TCP11L2Q8N4U5 519 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 PRDM11Q9NQV5 511 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 VCANP13611 3396 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 CCNB3Q8WWL7 1395 aa8.34□□□□□ -1.07
PTPN3-205ENST00000447271 HFM1A2PYH4 1435 aa8.33□□□□□ -1.08
PTPN3-205ENST00000447271 LTBP1Q14766 1721 aa8.33□□□□□ -1.08
PTPN3-205ENST00000447271 TIMELESSQ9UNS1 1208 aa8.33□□□□□ -1.08
PTPN3-205ENST00000447271 PPEF1O14829 653 aaPredicted RBP8.32□□□□□ -1.08
PTPN3-205ENST00000447271 RNF166Q96A37 237 aaPredicted RBP8.32□□□□□ -1.08
PTPN3-205ENST00000447271 RYDENQ9NUL5 291 aaKnown RBP8.32□□□□□ -1.08
PTPN3-205ENST00000447271 KIF1AQ12756 1690 aa8.32□□□□□ -1.08
PTPN3-205ENST00000447271 AKAP12Q02952 1782 aa8.32□□□□□ -1.08
PTPN3-205ENST00000447271 LAMB4A4D0S4 1761 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 PSEN2P49810 448 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 EVA1CP58658 441 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 DEFB115Q30KQ5 88 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 DMRTA1Q5VZB9 504 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 RTN4Q9NQC3 1192 aaKnown RBP8.31□□□□□ -1.08
PTPN3-205ENST00000447271 RNF181Q9P0P0 153 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 BCS1LQ9Y276 419 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 CCDC18Q5T9S5 1454 aa8.31□□□□□ -1.08
PTPN3-205ENST00000447271 MKI67P46013 3256 aaKnown RBP8.3□□□□□ -1.08
PTPN3-205ENST00000447271 TMEM88BA6NKF7 163 aa8.3□□□□□ -1.08
PTPN3-205ENST00000447271 PBX2P40425 430 aa8.3□□□□□ -1.08
PTPN3-205ENST00000447271 MFSD10Q14728 455 aa8.3□□□□□ -1.08
PTPN3-205ENST00000447271 LRRC4BQ9NT99 713 aa8.3□□□□□ -1.08
PTPN3-205ENST00000447271 CHRNA2Q15822 529 aa8.29□□□□□ -1.08
PTPN3-205ENST00000447271 DIEXFQ68CQ4 756 aaKnown RBP8.29□□□□□ -1.08
PTPN3-205ENST00000447271 LARP6Q9BRS8 491 aaKnown RBP8.29□□□□□ -1.08
PTPN3-205ENST00000447271 IGSF5Q9NSI5 407 aa8.29□□□□□ -1.08
PTPN3-205ENST00000447271 EMILIN3Q9NT22 766 aa8.29□□□□□ -1.08
PTPN3-205ENST00000447271 LRRC37A3O60309 1634 aa8.29□□□□□ -1.08
PTPN3-205ENST00000447271 SBF1O95248 1867 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 CDC42BPGQ6DT37 1551 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 SBNO1A3KN83 1393 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 BRD4O60885 1362 aaPredicted RBP8.28□□□□□ -1.08
PTPN3-205ENST00000447271 RASSF10A6NK89 507 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 LARP1Q6PKG0 1096 aaKnown RBP8.28□□□□□ -1.08
PTPN3-205ENST00000447271 CCDC24Q8N4L8 307 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 SSH2Q76I76 1423 aa8.28□□□□□ -1.08
PTPN3-205ENST00000447271 ROBO2Q9HCK4 1378 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 KAT6BQ8WYB5 2073 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 PDE4AP27815 886 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 DDB1Q16531 1140 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 THRAP3Q9Y2W1 955 aaKnown RBP8.27□□□□□ -1.09
PTPN3-205ENST00000447271 THSD7BQ9C0I4 1608 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 N4BP2Q86UW6 1770 aaPredicted RBP8.27□□□□□ -1.09
PTPN3-205ENST00000447271 PIK3C2AO00443 1686 aa8.27□□□□□ -1.09
PTPN3-205ENST00000447271 ARHGAP33O14559 1287 aa8.26□□□□□ -1.09
PTPN3-205ENST00000447271 TSPY4P0CV99 314 aa8.26□□□□□ -1.09
PTPN3-205ENST00000447271 TSPY10P0CW01 314 aa8.26□□□□□ -1.09
PTPN3-205ENST00000447271 MARCH10Q8NA82 808 aaPredicted RBP8.26□□□□□ -1.09
PTPN3-205ENST00000447271 DDX27Q96GQ7 796 aaKnown RBP8.26□□□□□ -1.09
PTPN3-205ENST00000447271 HIRIP3Q9BW71 556 aaPredicted RBP8.26□□□□□ -1.09
PTPN3-205ENST00000447271 CEP290O15078 2479 aa8.25□□□□□ -1.09
PTPN3-205ENST00000447271 SPTBN5Q9NRC6 3674 aaKnown RBP8.25□□□□□ -1.09
PTPN3-205ENST00000447271 GRM1Q13255 1194 aa8.25□□□□□ -1.09
PTPN3-205ENST00000447271 ADGRD1Q6QNK2 874 aa8.25□□□□□ -1.09
PTPN3-205ENST00000447271 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.25□□□□□ -1.09
PTPN3-205ENST00000447271 PASKQ96RG2 1323 aa8.25□□□□□ -1.09
PTPN3-205ENST00000447271 KANK1Q14678 1352 aa8.24□□□□□ -1.09
PTPN3-205ENST00000447271 KNDC1Q76NI1 1749 aa8.24□□□□□ -1.09
PTPN3-205ENST00000447271 BCL9O00512 1426 aa8.24□□□□□ -1.09
PTPN3-205ENST00000447271 SPATA31E1Q6ZUB1 1445 aa8.24□□□□□ -1.09
PTPN3-205ENST00000447271 GLTPD2A6NH11 291 aa8.24□□□□□ -1.09
PTPN3-205ENST00000447271 CA12O43570 354 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms