RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 LAS1LQ9Y4W2 734 aaKnown RBP23.52■■□□□ 1.36
TRAPPC4-203ENST00000447216 KDM3BQ7LBC6 1761 aa23.51■■□□□ 1.35
TRAPPC4-203ENST00000447216 PTF1AQ7RTS3 328 aa23.51■■□□□ 1.35
TRAPPC4-203ENST00000447216 WDR63Q8IWG1 891 aa23.51■■□□□ 1.35
TRAPPC4-203ENST00000447216 MIS18AQ9NYP9 233 aa23.51■■□□□ 1.35
TRAPPC4-203ENST00000447216 PIGBQ92521 554 aa23.5■■□□□ 1.35
TRAPPC4-203ENST00000447216 SPINK5Q9NQ38 1064 aaPredicted RBP23.5■■□□□ 1.35
TRAPPC4-203ENST00000447216 TMOD3Q9NYL9 352 aa23.5■■□□□ 1.35
TRAPPC4-203ENST00000447216 EP400Q96L91 3159 aa23.5■■□□□ 1.35
TRAPPC4-203ENST00000447216 TAF7Q15545 349 aaPredicted RBP23.49■■□□□ 1.35
TRAPPC4-203ENST00000447216 PAPPAQ13219 1627 aa23.48■■□□□ 1.35
TRAPPC4-203ENST00000447216 CALD1Q05682 793 aaKnown RBP23.48■■□□□ 1.35
TRAPPC4-203ENST00000447216 CDCA7LQ96GN5 454 aa23.48■■□□□ 1.35
TRAPPC4-203ENST00000447216 TRIM37O94972 964 aa23.47■■□□□ 1.35
TRAPPC4-203ENST00000447216 GOLGA2Q08379 1002 aa23.47■■□□□ 1.35
TRAPPC4-203ENST00000447216 BTBD11A6QL63 1104 aa23.46■■□□□ 1.35
TRAPPC4-203ENST00000447216 SLC39A6Q13433 755 aa23.46■■□□□ 1.35
TRAPPC4-203ENST00000447216 IL16Q14005 1332 aa23.46■■□□□ 1.35
TRAPPC4-203ENST00000447216 IFT57Q9NWB7 429 aa23.46■■□□□ 1.35
TRAPPC4-203ENST00000447216 KCNQ3O43525 872 aa23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 ZNF853P0CG23 659 aa23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 GNAI1P63096 354 aa23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 TSR2Q969E8 191 aaKnown RBP23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 CFAP44Q96MT7 982 aa23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 TNS1Q9HBL0 1735 aaKnown RBP23.45■■□□□ 1.34
TRAPPC4-203ENST00000447216 CHL1O00533 1208 aa23.44■■□□□ 1.34
TRAPPC4-203ENST00000447216 UBR2Q8IWV8 1755 aa23.44■■□□□ 1.34
TRAPPC4-203ENST00000447216 MBIPQ9NS73 344 aa23.43■■□□□ 1.34
TRAPPC4-203ENST00000447216 ASAP1Q9ULH1 1129 aa23.43■■□□□ 1.34
TRAPPC4-203ENST00000447216 SLFN5Q08AF3 891 aa23.42■■□□□ 1.34
TRAPPC4-203ENST00000447216 BCL11BQ9C0K0 894 aaPredicted RBP23.42■■□□□ 1.34
TRAPPC4-203ENST00000447216 ATG3Q9NT62 314 aa23.41■■□□□ 1.34
TRAPPC4-203ENST00000447216 FANCIQ9NVI1 1328 aa23.4■■□□□ 1.34
TRAPPC4-203ENST00000447216 E9PSI1 815 aa23.4■■□□□ 1.34
TRAPPC4-203ENST00000447216 ZNF790Q6PG37 636 aa23.39■■□□□ 1.33
TRAPPC4-203ENST00000447216 ILDR2Q71H61 639 aa23.39■■□□□ 1.33
TRAPPC4-203ENST00000447216 MYH16Q9H6N6 1097 aa23.39■■□□□ 1.33
TRAPPC4-203ENST00000447216 BABAM1Q9NWV8 329 aa23.39■■□□□ 1.33
TRAPPC4-203ENST00000447216 KCPQ6ZWJ8 1503 aa23.38■■□□□ 1.33
TRAPPC4-203ENST00000447216 TTC5Q8N0Z6 440 aa23.38■■□□□ 1.33
TRAPPC4-203ENST00000447216 LY75O60449 1722 aa23.38■■□□□ 1.33
TRAPPC4-203ENST00000447216 C5P01031 1676 aa23.37■■□□□ 1.33
TRAPPC4-203ENST00000447216 PTCD1O75127 700 aaKnown RBP23.36■■□□□ 1.33
TRAPPC4-203ENST00000447216 KRT24Q2M2I5 525 aa23.36■■□□□ 1.33
TRAPPC4-203ENST00000447216 DUSP27Q5VZP5 1158 aa23.36■■□□□ 1.33
TRAPPC4-203ENST00000447216 TRMT2AQ8IZ69 625 aaKnown RBP23.36■■□□□ 1.33
TRAPPC4-203ENST00000447216 PALLDQ8WX93 1383 aa23.36■■□□□ 1.33
TRAPPC4-203ENST00000447216 EIF4A1P60842 406 aaKnown RBP23.35■■□□□ 1.33
TRAPPC4-203ENST00000447216 ZNF496Q96IT1 587 aaPredicted RBP23.35■■□□□ 1.33
TRAPPC4-203ENST00000447216 RBM42Q9BTD8 480 aaKnown RBP23.35■■□□□ 1.33
TRAPPC4-203ENST00000447216 SMARCC1Q92922 1105 aaPredicted RBP23.34■■□□□ 1.33
TRAPPC4-203ENST00000447216 APBA3O96018 575 aa23.33■■□□□ 1.33
TRAPPC4-203ENST00000447216 EXOSC9Q06265 439 aaKnown RBP23.33■■□□□ 1.33
TRAPPC4-203ENST00000447216 TJP1Q07157 1748 aa23.33■■□□□ 1.32
TRAPPC4-203ENST00000447216 C8orf58Q8NAV2 365 aa23.32■■□□□ 1.32
TRAPPC4-203ENST00000447216 FMNL2Q96PY5 1086 aa23.32■■□□□ 1.32
TRAPPC4-203ENST00000447216 ELL2O00472 640 aaPredicted RBP23.31■■□□□ 1.32
TRAPPC4-203ENST00000447216 SLC4A9Q96Q91 983 aa23.31■■□□□ 1.32
TRAPPC4-203ENST00000447216 TAF1LQ8IZX4 1826 aa23.31■■□□□ 1.32
TRAPPC4-203ENST00000447216 HEG1Q9ULI3 1381 aa23.3■■□□□ 1.32
TRAPPC4-203ENST00000447216 LAMB4A4D0S4 1761 aa23.3■■□□□ 1.32
TRAPPC4-203ENST00000447216 PRAMEF22A3QJZ6 481 aa23.3■■□□□ 1.32
TRAPPC4-203ENST00000447216 TSPYL6Q8N831 410 aa23.3■■□□□ 1.32
TRAPPC4-203ENST00000447216 KCNQ4P56696 695 aa23.29■■□□□ 1.32
TRAPPC4-203ENST00000447216 RGPD3A6NKT7 1758 aaPredicted RBP23.28■■□□□ 1.32
TRAPPC4-203ENST00000447216 RGPD4Q7Z3J3 1758 aa23.28■■□□□ 1.32
TRAPPC4-203ENST00000447216 LOC102724428A0A0B4J2F2 783 aa23.28■■□□□ 1.32
TRAPPC4-203ENST00000447216 SIK1P57059 783 aa23.28■■□□□ 1.32
TRAPPC4-203ENST00000447216 ZNF831Q5JPB2 1677 aa23.28■■□□□ 1.32
TRAPPC4-203ENST00000447216 SF3B2Q13435 895 aaKnown RBP23.27■■□□□ 1.32
TRAPPC4-203ENST00000447216 COL5A3P25940 1745 aaPredicted RBP23.26■■□□□ 1.31
TRAPPC4-203ENST00000447216 GIGYF1O75420 1035 aaPredicted RBP23.26■■□□□ 1.31
TRAPPC4-203ENST00000447216 DNAJC10Q8IXB1 793 aa23.26■■□□□ 1.31
TRAPPC4-203ENST00000447216 CICQ96RK0 1608 aaPredicted RBP23.26■■□□□ 1.31
TRAPPC4-203ENST00000447216 SNRPA1P09661 255 aaKnown RBP23.25■■□□□ 1.31
TRAPPC4-203ENST00000447216 ATP6V1AP38606 617 aa23.25■■□□□ 1.31
TRAPPC4-203ENST00000447216 TWISTNBQ3B726 338 aaPredicted RBP23.25■■□□□ 1.31
TRAPPC4-203ENST00000447216 MYH14Q7Z406 1995 aaKnown RBP23.25■■□□□ 1.31
TRAPPC4-203ENST00000447216 PLSCR1O15162 318 aa23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 EN1Q05925 392 aaPredicted RBP23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 ITPK1Q13572 414 aa23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 DEFB132Q7Z7B7 95 aa23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 NECTIN2Q92692 538 aa23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 CCNL1Q9UK58 526 aaPredicted RBP23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 USP16Q9Y5T5 823 aa23.24■■□□□ 1.31
TRAPPC4-203ENST00000447216 VSIG10Q8N0Z9 540 aa23.23■■□□□ 1.31
TRAPPC4-203ENST00000447216 UPF1Q92900 1129 aaKnown RBP eCLIP23.23■■□□□ 1.31
TRAPPC4-203ENST00000447216 VAMP4O75379 141 aa23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 EIF2S2P20042 333 aaKnown RBP23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 BAG6P46379 1132 aa23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 TXNRD1Q16881 649 aa23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 PROM2Q8N271 834 aa23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 LRRC4BQ9NT99 713 aa23.22■■□□□ 1.31
TRAPPC4-203ENST00000447216 EZH2Q15910 746 aaKnown RBP23.21■■□□□ 1.31
TRAPPC4-203ENST00000447216 CCDC125Q86Z20 511 aa23.21■■□□□ 1.31
TRAPPC4-203ENST00000447216 RREB1Q92766 1687 aa23.21■■□□□ 1.31
TRAPPC4-203ENST00000447216 CACNA1FO60840 1977 aa23.2■■□□□ 1.3
TRAPPC4-203ENST00000447216 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.3
TRAPPC4-203ENST00000447216 LINC00116Q8NCU8 138 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms