RNA–Protein interactions for RNA: ENST00000442956.1

LINC00299-202, long intergenic non-protein coding RNA 299, humanhuman

TSL 2 BASIC

Gene LINC00299, Length 2,342 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00299-202ENST00000442956 PTPRCP08575 1304 aa18.55■□□□□ 0.56
LINC00299-202ENST00000442956 KDM6AO15550 1401 aaPredicted RBP18.54■□□□□ 0.56
LINC00299-202ENST00000442956 NECTIN2Q92692 538 aa18.54■□□□□ 0.56
LINC00299-202ENST00000442956 SKAP1Q86WV1 359 aa18.53■□□□□ 0.56
LINC00299-202ENST00000442956 RGS12O14924 1447 aa18.53■□□□□ 0.56
LINC00299-202ENST00000442956 ADAMTS7Q9UKP4 1686 aa18.53■□□□□ 0.56
LINC00299-202ENST00000442956 IL2RBP14784 551 aa18.52■□□□□ 0.56
LINC00299-202ENST00000442956 HDGFL1Q5TGJ6 251 aa18.52■□□□□ 0.56
LINC00299-202ENST00000442956 G2E3Q7L622 706 aa18.52■□□□□ 0.56
LINC00299-202ENST00000442956 DCAF5Q96JK2 942 aa18.52■□□□□ 0.56
LINC00299-202ENST00000442956 COL22A1Q8NFW1 1626 aaPredicted RBP18.52■□□□□ 0.56
LINC00299-202ENST00000442956 ZCRB1Q8TBF4 217 aaKnown RBP18.52■□□□□ 0.56
LINC00299-202ENST00000442956 SLC52A2Q9HAB3 445 aa18.52■□□□□ 0.56
LINC00299-202ENST00000442956 UBAP1LF5GYI3 381 aa18.51■□□□□ 0.55
LINC00299-202ENST00000442956 ZBTB7BO15156 539 aaPredicted RBP18.51■□□□□ 0.55
LINC00299-202ENST00000442956 HSP90AB1P08238 724 aaKnown RBP18.51■□□□□ 0.55
LINC00299-202ENST00000442956 HOXB7P09629 217 aa18.51■□□□□ 0.55
LINC00299-202ENST00000442956 CHMP4BQ9H444 224 aaKnown RBP18.51■□□□□ 0.55
LINC00299-202ENST00000442956 RWDD1Q9H446 243 aaPredicted RBP18.51■□□□□ 0.55
LINC00299-202ENST00000442956 PKD1L3Q7Z443 1732 aa18.51■□□□□ 0.55
LINC00299-202ENST00000442956 COL16A1Q07092 1604 aaPredicted RBP18.51■□□□□ 0.55
LINC00299-202ENST00000442956 KDM3BQ7LBC6 1761 aa18.51■□□□□ 0.55
LINC00299-202ENST00000442956 USP35Q9P2H5 1018 aa18.5■□□□□ 0.55
LINC00299-202ENST00000442956 PHLPP1O60346 1717 aa18.5■□□□□ 0.55
LINC00299-202ENST00000442956 INTS3Q68E01 1043 aaKnown RBP18.5■□□□□ 0.55
LINC00299-202ENST00000442956 NFATC2IPQ8NCF5 419 aa18.5■□□□□ 0.55
LINC00299-202ENST00000442956 PCDH11XQ9BZA7 1347 aa18.5■□□□□ 0.55
LINC00299-202ENST00000442956 PCDH11YQ9BZA8 1340 aa18.5■□□□□ 0.55
LINC00299-202ENST00000442956 EIF2S2P20042 333 aaKnown RBP18.49■□□□□ 0.55
LINC00299-202ENST00000442956 FLIIQ13045 1269 aa18.49■□□□□ 0.55
LINC00299-202ENST00000442956 CHMP4AQ9BY43 222 aa18.48■□□□□ 0.55
LINC00299-202ENST00000442956 ADAMTS2O95450 1211 aa18.48■□□□□ 0.55
LINC00299-202ENST00000442956 AEBP2Q6ZN18 517 aaPredicted RBP18.48■□□□□ 0.55
LINC00299-202ENST00000442956 COL14A1Q05707 1796 aaKnown RBP18.47■□□□□ 0.55
LINC00299-202ENST00000442956 PARP4Q9UKK3 1724 aaKnown RBP18.47■□□□□ 0.55
LINC00299-202ENST00000442956 HDAC1Q13547 482 aaPredicted RBP18.47■□□□□ 0.55
LINC00299-202ENST00000442956 ZNF790Q6PG37 636 aa18.47■□□□□ 0.55
LINC00299-202ENST00000442956 HEG1Q9ULI3 1381 aa18.47■□□□□ 0.55
LINC00299-202ENST00000442956 GIGYF1O75420 1035 aaPredicted RBP18.46■□□□□ 0.55
LINC00299-202ENST00000442956 SLC39A6Q13433 755 aa18.46■□□□□ 0.55
LINC00299-202ENST00000442956 F6X3S4 739 aa18.46■□□□□ 0.55
LINC00299-202ENST00000442956 FKBP5Q13451 457 aaPredicted RBP18.46■□□□□ 0.55
LINC00299-202ENST00000442956 VIRMAQ69YN4 1812 aaKnown RBP18.45■□□□□ 0.54
LINC00299-202ENST00000442956 SIPA1L3O60292 1781 aaPredicted RBP18.45■□□□□ 0.54
LINC00299-202ENST00000442956 SCN11AQ9UI33 1791 aa18.45■□□□□ 0.54
LINC00299-202ENST00000442956 MRC1P22897 1456 aa18.45■□□□□ 0.54
LINC00299-202ENST00000442956 CABP4P57796 275 aa18.45■□□□□ 0.54
LINC00299-202ENST00000442956 DDX54Q8TDD1 881 aaKnown RBP18.45■□□□□ 0.54
LINC00299-202ENST00000442956 C1orf115Q9H7X2 142 aa18.45■□□□□ 0.54
LINC00299-202ENST00000442956 CHPF2Q9P2E5 772 aa18.45■□□□□ 0.54
LINC00299-202ENST00000442956 RBM19Q9Y4C8 960 aaKnown RBP18.45■□□□□ 0.54
LINC00299-202ENST00000442956 NUTM2BA6NNL0 878 aaPredicted RBP18.44■□□□□ 0.54
LINC00299-202ENST00000442956 NUTM2EB1AL46 878 aaPredicted RBP18.44■□□□□ 0.54
LINC00299-202ENST00000442956 SLC4A10Q6U841 1118 aa18.44■□□□□ 0.54
LINC00299-202ENST00000442956 NUTM2AQ8IVF1 878 aaPredicted RBP18.44■□□□□ 0.54
LINC00299-202ENST00000442956 PRAMEF22A3QJZ6 481 aa18.43■□□□□ 0.54
LINC00299-202ENST00000442956 NKX1-1Q15270 411 aaPredicted RBP18.43■□□□□ 0.54
LINC00299-202ENST00000442956 PHAXQ9H814 394 aaKnown RBP18.43■□□□□ 0.54
LINC00299-202ENST00000442956 RGS3P49796 1198 aa18.43■□□□□ 0.54
LINC00299-202ENST00000442956 CCT4P50991 539 aaKnown RBP18.43■□□□□ 0.54
LINC00299-202ENST00000442956 TTC5Q8N0Z6 440 aa18.41■□□□□ 0.54
LINC00299-202ENST00000442956 DBF4Q9UBU7 674 aaPredicted RBP18.41■□□□□ 0.54
LINC00299-202ENST00000442956 ZNF496Q96IT1 587 aaPredicted RBP18.41■□□□□ 0.54
LINC00299-202ENST00000442956 ERVV-2B6SEH9 535 aa18.4■□□□□ 0.54
LINC00299-202ENST00000442956 ANXA1P04083 346 aa18.4■□□□□ 0.54
LINC00299-202ENST00000442956 PDZRN3Q9UPQ7 1066 aa18.4■□□□□ 0.54
LINC00299-202ENST00000442956 DISP2A7MBM2 1401 aa18.39■□□□□ 0.54
LINC00299-202ENST00000442956 MEIS3Q99687 375 aa18.39■□□□□ 0.53
LINC00299-202ENST00000442956 SMC5Q8IY18 1101 aa18.38■□□□□ 0.53
LINC00299-202ENST00000442956 PROSER3Q2NL68 480 aa18.38■□□□□ 0.53
LINC00299-202ENST00000442956 SIRT2Q8IXJ6 389 aa18.38■□□□□ 0.53
LINC00299-202ENST00000442956 FMNL2Q96PY5 1086 aa18.38■□□□□ 0.53
LINC00299-202ENST00000442956 CERKQ8TCT0 537 aa18.37■□□□□ 0.53
LINC00299-202ENST00000442956 CACNA1FO60840 1977 aa18.37■□□□□ 0.53
LINC00299-202ENST00000442956 SNRPA1P09661 255 aaKnown RBP18.37■□□□□ 0.53
LINC00299-202ENST00000442956 SHANK3Q9BYB0 1731 aa18.36■□□□□ 0.53
LINC00299-202ENST00000442956 PDE4AP27815 886 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 DDX21Q9NR30 783 aaKnown RBP eCLIP18.35■□□□□ 0.53
LINC00299-202ENST00000442956 HYPKQ9NX55 129 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 PLCH1Q4KWH8 1693 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 PXDNLA1KZ92 1463 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 PI4KAP2A4QPH2 592 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 PI4KAP1Q8N8J0 262 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 SPATA31A1Q5TZJ5 1347 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 JCADQ9P266 1359 aa18.35■□□□□ 0.53
LINC00299-202ENST00000442956 PDIA6Q15084 440 aa18.34■□□□□ 0.53
LINC00299-202ENST00000442956 EXOC5O00471 708 aa18.34■□□□□ 0.53
LINC00299-202ENST00000442956 ATP10DQ9P241 1426 aa18.34■□□□□ 0.53
LINC00299-202ENST00000442956 DNAAF4Q8WXU2 420 aa18.33■□□□□ 0.53
LINC00299-202ENST00000442956 USP16Q9Y5T5 823 aa18.33■□□□□ 0.53
LINC00299-202ENST00000442956 CEP85Q6P2H3 762 aa18.33■□□□□ 0.52
LINC00299-202ENST00000442956 RPAP2Q8IXW5 612 aaPredicted RBP18.33■□□□□ 0.52
LINC00299-202ENST00000442956 ANKRD44Q8N8A2 993 aa18.33■□□□□ 0.52
LINC00299-202ENST00000442956 BACH2Q9BYV9 841 aa18.33■□□□□ 0.52
LINC00299-202ENST00000442956 THRAP3Q9Y2W1 955 aaKnown RBP18.33■□□□□ 0.52
LINC00299-202ENST00000442956 GCC1Q96CN9 775 aa18.32■□□□□ 0.52
LINC00299-202ENST00000442956 TMOD3Q9NYL9 352 aa18.32■□□□□ 0.52
LINC00299-202ENST00000442956 ADCY9O60503 1353 aa18.32■□□□□ 0.52
LINC00299-202ENST00000442956 SLIT2O94813 1529 aa18.32■□□□□ 0.52
LINC00299-202ENST00000442956 GNAI3P08754 354 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms