RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 RAPGEF4Q8WZA2 1011 aa9.93□□□□□ -0.82
RFX3-206ENST00000442560 CCNL1Q9UK58 526 aaPredicted RBP9.93□□□□□ -0.82
RFX3-206ENST00000442560 LTN1O94822 1766 aa9.93□□□□□ -0.82
RFX3-206ENST00000442560 PAPPAQ13219 1627 aa9.93□□□□□ -0.82
RFX3-206ENST00000442560 MEGF6O75095 1541 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 NSD2O96028 1365 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 USP47Q96K76 1375 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 GPR162Q16538 588 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 HSP90AB2PQ58FF8 381 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 ZNF784Q8NCA9 323 aaPredicted RBP9.92□□□□□ -0.82
RFX3-206ENST00000442560 SLAIN1Q8ND83 568 aa9.92□□□□□ -0.82
RFX3-206ENST00000442560 RTL1A6NKG5 1358 aa9.91□□□□□ -0.82
RFX3-206ENST00000442560 MAP3K5Q99683 1374 aa9.9□□□□□ -0.82
RFX3-206ENST00000442560 TRIM26Q12899 539 aaPredicted RBP9.9□□□□□ -0.82
RFX3-206ENST00000442560 CDCA8Q53HL2 280 aa9.9□□□□□ -0.82
RFX3-206ENST00000442560 CARD14Q9BXL6 1004 aa9.9□□□□□ -0.82
RFX3-206ENST00000442560 BTAF1O14981 1849 aa9.9□□□□□ -0.82
RFX3-206ENST00000442560 SMG6Q86US8 1419 aaKnown RBP9.9□□□□□ -0.83
RFX3-206ENST00000442560 INSRP06213 1382 aa9.89□□□□□ -0.83
RFX3-206ENST00000442560 CGNL1Q0VF96 1302 aa9.89□□□□□ -0.83
RFX3-206ENST00000442560 COL23A1Q86Y22 540 aaPredicted RBP9.89□□□□□ -0.83
RFX3-206ENST00000442560 IFNL1Q8IU54 200 aa9.89□□□□□ -0.83
RFX3-206ENST00000442560 NLGN2Q8NFZ4 835 aa9.89□□□□□ -0.83
RFX3-206ENST00000442560 EMILIN1Q9Y6C2 1016 aa9.89□□□□□ -0.83
RFX3-206ENST00000442560 FAM208AQ9UK61 1670 aaKnown RBP9.88□□□□□ -0.83
RFX3-206ENST00000442560 PPM1GO15355 546 aaPredicted RBP9.88□□□□□ -0.83
RFX3-206ENST00000442560 CYP27B1O15528 508 aa9.88□□□□□ -0.83
RFX3-206ENST00000442560 ST18O60284 1047 aa9.88□□□□□ -0.83
RFX3-206ENST00000442560 MSL1Q68DK7 614 aa9.88□□□□□ -0.83
RFX3-206ENST00000442560 MPRIPQ6WCQ1 1025 aa9.88□□□□□ -0.83
RFX3-206ENST00000442560 FLT4P35916 1363 aa9.88□□□□□ -0.83
RFX3-206ENST00000442560 PCDH11XQ9BZA7 1347 aa9.87□□□□□ -0.83
RFX3-206ENST00000442560 PCDH11YQ9BZA8 1340 aa9.87□□□□□ -0.83
RFX3-206ENST00000442560 TMEM106CQ9BVX2 250 aa9.87□□□□□ -0.83
RFX3-206ENST00000442560 NSD3Q9BZ95 1437 aa9.87□□□□□ -0.83
RFX3-206ENST00000442560 POLR3GLQ9BT43 218 aa9.86□□□□□ -0.83
RFX3-206ENST00000442560 PALLDQ8WX93 1383 aa9.86□□□□□ -0.83
RFX3-206ENST00000442560 DOT1LQ8TEK3 1739 aa9.85□□□□□ -0.83
RFX3-206ENST00000442560 SMIM5Q71RC9 77 aa9.85□□□□□ -0.83
RFX3-206ENST00000442560 KIF24Q5T7B8 1368 aa9.85□□□□□ -0.83
RFX3-206ENST00000442560 C1QTNF8P60827 252 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 FLAD1Q8NFF5 587 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 PIGBQ92521 554 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 SMARCC1Q92922 1105 aaPredicted RBP9.84□□□□□ -0.83
RFX3-206ENST00000442560 AK7Q96M32 723 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 EYA1Q99502 592 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 SPG7Q9UQ90 795 aa9.84□□□□□ -0.83
RFX3-206ENST00000442560 WASHC2AQ641Q2 1341 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 SENP3-EIF4A1A0A087X0R7 540 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 PHF14O94880 888 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 YBX3P16989 372 aaKnown RBP eCLIP9.83□□□□□ -0.84
RFX3-206ENST00000442560 NUBP1P53384 320 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 NKX1-1Q15270 411 aaPredicted RBP9.83□□□□□ -0.84
RFX3-206ENST00000442560 AMIGO3Q86WK7 504 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 POLKQ9UBT6 870 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 RGPD2P0DJD1 1756 aa9.83□□□□□ -0.84
RFX3-206ENST00000442560 SHANK3Q9BYB0 1731 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 GRIN3BO60391 1043 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 PLCG2P16885 1265 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 HMGB2P26583 209 aaKnown RBP9.82□□□□□ -0.84
RFX3-206ENST00000442560 TNNT2P45379 298 aaPredicted RBP9.82□□□□□ -0.84
RFX3-206ENST00000442560 IER5LQ5T953 404 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 PCGF6Q9BYE7 350 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 TIMELESSQ9UNS1 1208 aa9.82□□□□□ -0.84
RFX3-206ENST00000442560 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.81□□□□□ -0.84
RFX3-206ENST00000442560 GIGYF1O75420 1035 aaPredicted RBP9.81□□□□□ -0.84
RFX3-206ENST00000442560 PHKG2P15735 406 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 IFNL2Q8IZJ0 200 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 TMOD3Q9NYL9 352 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 ASAP1Q9ULH1 1129 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 CD2APQ9Y5K6 639 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 LY75O60449 1722 aa9.81□□□□□ -0.84
RFX3-206ENST00000442560 LOC102724428A0A0B4J2F2 783 aa9.8□□□□□ -0.84
RFX3-206ENST00000442560 SIK1P57059 783 aa9.8□□□□□ -0.84
RFX3-206ENST00000442560 EIF4A2Q14240 407 aaKnown RBP9.8□□□□□ -0.84
RFX3-206ENST00000442560 LINC00116Q8NCU8 138 aa9.8□□□□□ -0.84
RFX3-206ENST00000442560 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.8□□□□□ -0.84
RFX3-206ENST00000442560 WWC3Q9ULE0 1092 aa9.8□□□□□ -0.84
RFX3-206ENST00000442560 NCAPD2Q15021 1401 aa9.8□□□□□ -0.84
RFX3-206ENST00000442560 KAT6BQ8WYB5 2073 aa9.79□□□□□ -0.84
RFX3-206ENST00000442560 QSER1Q2KHR3 1735 aa9.79□□□□□ -0.84
RFX3-206ENST00000442560 ATP6V1AP38606 617 aa9.79□□□□□ -0.84
RFX3-206ENST00000442560 ITPK1Q13572 414 aa9.79□□□□□ -0.84
RFX3-206ENST00000442560 ATG3Q9NT62 314 aa9.79□□□□□ -0.84
RFX3-206ENST00000442560 TUBGCP6Q96RT7 1819 aa9.78□□□□□ -0.84
RFX3-206ENST00000442560 HSPA5P11021 654 aaKnown RBP9.78□□□□□ -0.84
RFX3-206ENST00000442560 SSFA2P28290 1259 aa9.78□□□□□ -0.84
RFX3-206ENST00000442560 MARVELD3Q96A59 401 aa9.78□□□□□ -0.84
RFX3-206ENST00000442560 COL24A1Q17RW2 1714 aa9.78□□□□□ -0.84
RFX3-206ENST00000442560 GNPATO15228 680 aa9.77□□□□□ -0.85
RFX3-206ENST00000442560 EIF4G2P78344 907 aaKnown RBP eCLIP9.77□□□□□ -0.85
RFX3-206ENST00000442560 FAM212AQ96EL1 285 aa9.77□□□□□ -0.85
RFX3-206ENST00000442560 PANK3Q9H999 370 aa9.77□□□□□ -0.85
RFX3-206ENST00000442560 IGSF1Q8N6C5 1336 aa9.77□□□□□ -0.85
RFX3-206ENST00000442560 KIF20BQ96Q89 1820 aa9.77□□□□□ -0.85
RFX3-206ENST00000442560 PYGBP11216 843 aa9.76□□□□□ -0.85
RFX3-206ENST00000442560 PLEKHO1Q53GL0 409 aaPredicted RBP9.76□□□□□ -0.85
RFX3-206ENST00000442560 CLSPNQ9HAW4 1339 aa9.76□□□□□ -0.85
RFX3-206ENST00000442560 TOGARAM1Q9Y4F4 1720 aa9.76□□□□□ -0.85
RFX3-206ENST00000442560 C5P01031 1676 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms