RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 HMGB2P26583 209 aaKnown RBP31.62■■■□□ 2.65
VARS-217ENST00000440048 NFATC2IPQ8NCF5 419 aa31.62■■■□□ 2.65
VARS-217ENST00000440048 RNMTO43148 476 aaKnown RBP31.61■■■□□ 2.65
VARS-217ENST00000440048 ADAMTS7Q9UKP4 1686 aa31.6■■■□□ 2.65
VARS-217ENST00000440048 GAS2L2Q8NHY3 880 aa31.6■■■□□ 2.65
VARS-217ENST00000440048 PHACTR3Q96KR7 559 aa31.6■■■□□ 2.65
VARS-217ENST00000440048 PNPLA7Q6ZV29 1317 aa31.59■■■□□ 2.65
VARS-217ENST00000440048 C4BP0C0L5 1744 aa31.58■■■□□ 2.65
VARS-217ENST00000440048 FCHSD2O94868 740 aa31.58■■■□□ 2.65
VARS-217ENST00000440048 SLC52A2Q9HAB3 445 aa31.57■■■□□ 2.64
VARS-217ENST00000440048 ATF5Q9Y2D1 282 aaPredicted RBP31.57■■■□□ 2.64
VARS-217ENST00000440048 MRC1P22897 1456 aa31.57■■■□□ 2.64
VARS-217ENST00000440048 ATP6V1AP38606 617 aa31.56■■■□□ 2.64
VARS-217ENST00000440048 ITPK1Q13572 414 aa31.56■■■□□ 2.64
VARS-217ENST00000440048 MTFR1LQ9H019 292 aa31.56■■■□□ 2.64
VARS-217ENST00000440048 MAP3K5Q99683 1374 aa31.56■■■□□ 2.64
VARS-217ENST00000440048 LINC00116Q8NCU8 138 aa31.55■■■□□ 2.64
VARS-217ENST00000440048 RBM42Q9BTD8 480 aaKnown RBP31.55■■■□□ 2.64
VARS-217ENST00000440048 ZNF831Q5JPB2 1677 aa31.54■■■□□ 2.64
VARS-217ENST00000440048 MYBBP1AQ9BQG0 1328 aaKnown RBP31.54■■■□□ 2.64
VARS-217ENST00000440048 GNAT3A8MTJ3 354 aa31.54■■■□□ 2.64
VARS-217ENST00000440048 SLC4A9Q96Q91 983 aa31.54■■■□□ 2.64
VARS-217ENST00000440048 PTGER2P43116 358 aa31.52■■■□□ 2.64
VARS-217ENST00000440048 ZNF316A6NFI3 1004 aaPredicted RBP31.51■■■□□ 2.63
VARS-217ENST00000440048 SLC16A10Q8TF71 515 aa31.51■■■□□ 2.63
VARS-217ENST00000440048 AK7Q96M32 723 aa31.51■■■□□ 2.63
VARS-217ENST00000440048 COL23A1Q86Y22 540 aaPredicted RBP31.5■■■□□ 2.63
VARS-217ENST00000440048 IL17REQ8NFR9 667 aa31.5■■■□□ 2.63
VARS-217ENST00000440048 UBR3Q6ZT12 1888 aa31.5■■■□□ 2.63
VARS-217ENST00000440048 PTCD1O75127 700 aaKnown RBP31.49■■■□□ 2.63
VARS-217ENST00000440048 PRKRIP1Q9H875 184 aaPredicted RBP31.48■■■□□ 2.63
VARS-217ENST00000440048 MSH5O43196 834 aa31.47■■■□□ 2.63
VARS-217ENST00000440048 AMIGO3Q86WK7 504 aa31.47■■■□□ 2.63
VARS-217ENST00000440048 SGIP1Q9BQI5 828 aa31.47■■■□□ 2.63
VARS-217ENST00000440048 COL5A3P25940 1745 aaPredicted RBP31.46■■■□□ 2.63
VARS-217ENST00000440048 FLAD1Q8NFF5 587 aa31.46■■■□□ 2.63
VARS-217ENST00000440048 SLC39A6Q13433 755 aa31.45■■■□□ 2.63
VARS-217ENST00000440048 COL24A1Q17RW2 1714 aa31.44■■■□□ 2.62
VARS-217ENST00000440048 SIPA1L3O60292 1781 aaPredicted RBP31.44■■■□□ 2.62
VARS-217ENST00000440048 DCAF8L1A6NGE4 600 aa31.43■■■□□ 2.62
VARS-217ENST00000440048 TEFQ10587 303 aa31.43■■■□□ 2.62
VARS-217ENST00000440048 SMIM5Q71RC9 77 aa31.43■■■□□ 2.62
VARS-217ENST00000440048 PLEKHF1Q96S99 279 aa31.43■■■□□ 2.62
VARS-217ENST00000440048 CEMIPQ8WUJ3 1361 aa31.43■■■□□ 2.62
VARS-217ENST00000440048 TJP1Q07157 1748 aa31.42■■■□□ 2.62
VARS-217ENST00000440048 GNPATO15228 680 aa31.42■■■□□ 2.62
VARS-217ENST00000440048 PHF14O94880 888 aa31.41■■■□□ 2.62
VARS-217ENST00000440048 NEFMP07197 916 aa31.41■■■□□ 2.62
VARS-217ENST00000440048 CICQ96RK0 1608 aaPredicted RBP31.41■■■□□ 2.62
VARS-217ENST00000440048 KCPQ6ZWJ8 1503 aa31.4■■■□□ 2.62
VARS-217ENST00000440048 MYH14Q7Z406 1995 aaKnown RBP31.4■■■□□ 2.62
VARS-217ENST00000440048 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.4■■■□□ 2.62
VARS-217ENST00000440048 SSFA2P28290 1259 aa31.4■■■□□ 2.62
VARS-217ENST00000440048 UBR2Q8IWV8 1755 aa31.39■■■□□ 2.62
VARS-217ENST00000440048 RC3H1Q5TC82 1133 aaKnown RBP31.39■■■□□ 2.62
VARS-217ENST00000440048 PNNQ9H307 717 aaKnown RBP31.39■■■□□ 2.62
VARS-217ENST00000440048 CNTNAP4Q9C0A0 1308 aa31.39■■■□□ 2.62
VARS-217ENST00000440048 DLG5Q8TDM6 1919 aa31.39■■■□□ 2.62
VARS-217ENST00000440048 RTF1Q92541 710 aaKnown RBP31.38■■■□□ 2.61
VARS-217ENST00000440048 MCM10Q7L590 875 aa31.37■■■□□ 2.61
VARS-217ENST00000440048 ARXQ96QS3 562 aa31.37■■■□□ 2.61
VARS-217ENST00000440048 HTATSF1O43719 755 aaKnown RBP31.36■■■□□ 2.61
VARS-217ENST00000440048 POLD1P28340 1107 aa31.35■■■□□ 2.61
VARS-217ENST00000440048 MSL1Q68DK7 614 aa31.35■■■□□ 2.61
VARS-217ENST00000440048 DCTN1Q14203 1278 aa31.34■■■□□ 2.61
VARS-217ENST00000440048 DNAJC10Q8IXB1 793 aa31.34■■■□□ 2.61
VARS-217ENST00000440048 TTC5Q8N0Z6 440 aa31.34■■■□□ 2.61
VARS-217ENST00000440048 RTCBQ9Y3I0 505 aaKnown RBP31.34■■■□□ 2.61
VARS-217ENST00000440048 MAPK8IP3Q9UPT6 1336 aa31.33■■■□□ 2.61
VARS-217ENST00000440048 CRKLP46109 303 aaKnown RBP31.33■■■□□ 2.61
VARS-217ENST00000440048 NFE2L2Q16236 605 aa31.33■■■□□ 2.61
VARS-217ENST00000440048 ZNF790Q6PG37 636 aa31.33■■■□□ 2.61
VARS-217ENST00000440048 RPS6KA4O75676 772 aa31.32■■■□□ 2.6
VARS-217ENST00000440048 FHDC1Q9C0D6 1143 aaPredicted RBP31.32■■■□□ 2.6
VARS-217ENST00000440048 VSIG10Q8N0Z9 540 aa31.31■■■□□ 2.6
VARS-217ENST00000440048 BTBD11A6QL63 1104 aa31.3■■■□□ 2.6
VARS-217ENST00000440048 TRAPPC3LQ5T215 181 aa31.3■■■□□ 2.6
VARS-217ENST00000440048 SYT17Q9BSW7 474 aa31.3■■■□□ 2.6
VARS-217ENST00000440048 WDR43Q15061 677 aaKnown RBP eCLIP31.29■■■□□ 2.6
VARS-217ENST00000440048 ZNF496Q96IT1 587 aaPredicted RBP31.29■■■□□ 2.6
VARS-217ENST00000440048 CYP19A1P11511 503 aaPredicted RBP31.28■■■□□ 2.6
VARS-217ENST00000440048 ADRA2BP18089 450 aa31.28■■■□□ 2.6
VARS-217ENST00000440048 INTS5Q6P9B9 1019 aaKnown RBP31.28■■■□□ 2.6
VARS-217ENST00000440048 KCNQ3O43525 872 aa31.27■■■□□ 2.6
VARS-217ENST00000440048 ARHGEF1Q92888 912 aaKnown RBP31.27■■■□□ 2.6
VARS-217ENST00000440048 CCDC87Q9NVE4 849 aa31.26■■■□□ 2.59
VARS-217ENST00000440048 HEG1Q9ULI3 1381 aa31.26■■■□□ 2.59
VARS-217ENST00000440048 C4AP0C0L4 1744 aa31.24■■■□□ 2.59
VARS-217ENST00000440048 FMNL2Q96PY5 1086 aa31.24■■■□□ 2.59
VARS-217ENST00000440048 ADAMTS8Q9UP79 889 aa31.24■■■□□ 2.59
VARS-217ENST00000440048 CCDC146Q8IYE0 955 aa31.23■■■□□ 2.59
VARS-217ENST00000440048 RFC4P35249 363 aa31.22■■■□□ 2.59
VARS-217ENST00000440048 TAF7Q15545 349 aaPredicted RBP31.22■■■□□ 2.59
VARS-217ENST00000440048 TMPOP42166 694 aaKnown RBP31.2■■■□□ 2.59
VARS-217ENST00000440048 RIPK4P57078 832 aa31.2■■■□□ 2.59
VARS-217ENST00000440048 KLHL34Q8N239 644 aa31.2■■■□□ 2.59
VARS-217ENST00000440048 THUMPD2Q9BTF0 503 aaKnown RBP31.2■■■□□ 2.59
VARS-217ENST00000440048 STARD3NLO95772 234 aa31.19■■■□□ 2.58
VARS-217ENST00000440048 RUNDC1Q96C34 613 aa31.19■■■□□ 2.58
VARS-217ENST00000440048 TEX13AQ9BXU3 409 aaPredicted RBP31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms