RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 ITGB4P16144 1822 aa29.78■■■□□ 2.36
CPSF4-204ENST00000436336 ERVV-2B6SEH9 535 aa29.77■■■□□ 2.36
CPSF4-204ENST00000436336 BTBD11A6QL63 1104 aa29.76■■■□□ 2.35
CPSF4-204ENST00000436336 DOT1LQ8TEK3 1739 aa29.75■■■□□ 2.35
CPSF4-204ENST00000436336 ONECUT3O60422 494 aaPredicted RBP29.75■■■□□ 2.35
CPSF4-204ENST00000436336 CABP4P57796 275 aa29.74■■■□□ 2.35
CPSF4-204ENST00000436336 NFATC2IPQ8NCF5 419 aa29.74■■■□□ 2.35
CPSF4-204ENST00000436336 SUPT16HQ9Y5B9 1047 aaKnown RBP29.74■■■□□ 2.35
CPSF4-204ENST00000436336 A0A0G2JS52 829 aa29.73■■■□□ 2.35
CPSF4-204ENST00000436336 MYT1Q01538 1121 aa29.73■■■□□ 2.35
CPSF4-204ENST00000436336 KAT6BQ8WYB5 2073 aa29.72■■■□□ 2.35
CPSF4-204ENST00000436336 MARCH10Q8NA82 808 aaPredicted RBP29.71■■■□□ 2.35
CPSF4-204ENST00000436336 PAPPAQ13219 1627 aa29.7■■■□□ 2.35
CPSF4-204ENST00000436336 C8orf58Q8NAV2 365 aa29.7■■■□□ 2.34
CPSF4-204ENST00000436336 TWISTNBQ3B726 338 aaPredicted RBP29.69■■■□□ 2.34
CPSF4-204ENST00000436336 TSPYL6Q8N831 410 aa29.68■■■□□ 2.34
CPSF4-204ENST00000436336 ZNF428Q96B54 188 aa29.68■■■□□ 2.34
CPSF4-204ENST00000436336 VAMP4O75379 141 aa29.68■■■□□ 2.34
CPSF4-204ENST00000436336 UBR2Q8IWV8 1755 aa29.67■■■□□ 2.34
CPSF4-204ENST00000436336 RARSP54136 660 aaKnown RBP29.66■■■□□ 2.34
CPSF4-204ENST00000436336 RBM6P78332 1123 aaKnown RBP29.66■■■□□ 2.34
CPSF4-204ENST00000436336 RNF123Q5XPI4 1314 aa29.66■■■□□ 2.34
CPSF4-204ENST00000436336 BRWD3Q6RI45 1802 aa29.66■■■□□ 2.34
CPSF4-204ENST00000436336 ELL2O00472 640 aaPredicted RBP29.65■■■□□ 2.34
CPSF4-204ENST00000436336 EIF4A1P60842 406 aaKnown RBP29.65■■■□□ 2.34
CPSF4-204ENST00000436336 KRT24Q2M2I5 525 aa29.65■■■□□ 2.34
CPSF4-204ENST00000436336 SEPT12Q8IYM1 358 aa29.65■■■□□ 2.34
CPSF4-204ENST00000436336 SOS1Q07889 1333 aaPredicted RBP29.65■■■□□ 2.34
CPSF4-204ENST00000436336 ZNF790Q6PG37 636 aa29.65■■■□□ 2.34
CPSF4-204ENST00000436336 TMOD3Q9NYL9 352 aa29.65■■■□□ 2.34
CPSF4-204ENST00000436336 KCNQ3O43525 872 aa29.64■■■□□ 2.34
CPSF4-204ENST00000436336 SLC39A6Q13433 755 aa29.62■■■□□ 2.33
CPSF4-204ENST00000436336 ALDH1L2Q3SY69 923 aa29.62■■■□□ 2.33
CPSF4-204ENST00000436336 TTC5Q8N0Z6 440 aa29.62■■■□□ 2.33
CPSF4-204ENST00000436336 CACNA1FO60840 1977 aa29.61■■■□□ 2.33
CPSF4-204ENST00000436336 HEG1Q9ULI3 1381 aa29.61■■■□□ 2.33
CPSF4-204ENST00000436336 BCL9O00512 1426 aa29.61■■■□□ 2.33
CPSF4-204ENST00000436336 BCAR3O75815 825 aa29.59■■■□□ 2.33
CPSF4-204ENST00000436336 SBF2Q86WG5 1849 aa29.59■■■□□ 2.33
CPSF4-204ENST00000436336 HOXB7P09629 217 aa29.59■■■□□ 2.33
CPSF4-204ENST00000436336 RRP1P56182 461 aaKnown RBP29.59■■■□□ 2.33
CPSF4-204ENST00000436336 SSH1Q8WYL5 1049 aa29.58■■■□□ 2.33
CPSF4-204ENST00000436336 PIGBQ92521 554 aa29.58■■■□□ 2.33
CPSF4-204ENST00000436336 RGS17Q9UGC6 210 aaPredicted RBP29.58■■■□□ 2.33
CPSF4-204ENST00000436336 C5P01031 1676 aa29.58■■■□□ 2.33
CPSF4-204ENST00000436336 PRIM1P49642 420 aaKnown RBP29.57■■■□□ 2.32
CPSF4-204ENST00000436336 SMC4Q9NTJ3 1288 aa29.57■■■□□ 2.32
CPSF4-204ENST00000436336 NHSQ6T4R5 1651 aa29.56■■■□□ 2.32
CPSF4-204ENST00000436336 RXRBP28702 533 aa29.56■■■□□ 2.32
CPSF4-204ENST00000436336 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.56■■■□□ 2.32
CPSF4-204ENST00000436336 SYTL4Q96C24 671 aaPredicted RBP29.56■■■□□ 2.32
CPSF4-204ENST00000436336 KCPQ6ZWJ8 1503 aa29.56■■■□□ 2.32
CPSF4-204ENST00000436336 LAMB4A4D0S4 1761 aa29.56■■■□□ 2.32
CPSF4-204ENST00000436336 FMNL2Q96PY5 1086 aa29.55■■■□□ 2.32
CPSF4-204ENST00000436336 BCL2L13Q9BXK5 485 aa29.55■■■□□ 2.32
CPSF4-204ENST00000436336 ACSBG1Q96GR2 724 aa29.54■■■□□ 2.32
CPSF4-204ENST00000436336 CHMP4AQ9BY43 222 aa29.54■■■□□ 2.32
CPSF4-204ENST00000436336 GIGYF1O75420 1035 aaPredicted RBP29.54■■■□□ 2.32
CPSF4-204ENST00000436336 ZNF496Q96IT1 587 aaPredicted RBP29.54■■■□□ 2.32
CPSF4-204ENST00000436336 BRPF1P55201 1214 aaPredicted RBP29.53■■■□□ 2.32
CPSF4-204ENST00000436336 NEFLP07196 543 aa29.52■■■□□ 2.32
CPSF4-204ENST00000436336 CCDC30Q5VVM6 783 aa29.51■■■□□ 2.31
CPSF4-204ENST00000436336 ILDR1Q86SU0 546 aaPredicted RBP29.51■■■□□ 2.31
CPSF4-204ENST00000436336 ATG3Q9NT62 314 aa29.51■■■□□ 2.31
CPSF4-204ENST00000436336 KRT27Q7Z3Y8 459 aa29.5■■■□□ 2.31
CPSF4-204ENST00000436336 MRPL50Q8N5N7 158 aaKnown RBP29.5■■■□□ 2.31
CPSF4-204ENST00000436336 KIF16BQ96L93 1317 aa29.5■■■□□ 2.31
CPSF4-204ENST00000436336 POTEAQ6S8J7 498 aa29.49■■■□□ 2.31
CPSF4-204ENST00000436336 ASAP1Q9ULH1 1129 aa29.49■■■□□ 2.31
CPSF4-204ENST00000436336 BTAF1O14981 1849 aa29.49■■■□□ 2.31
CPSF4-204ENST00000436336 PLIN1O60240 522 aa29.48■■■□□ 2.31
CPSF4-204ENST00000436336 SNRPA1P09661 255 aaKnown RBP29.48■■■□□ 2.31
CPSF4-204ENST00000436336 HDGFL1Q5TGJ6 251 aa29.48■■■□□ 2.31
CPSF4-204ENST00000436336 TCERG1O14776 1098 aaKnown RBP29.47■■■□□ 2.31
CPSF4-204ENST00000436336 FAM182BQ5T319 152 aa29.47■■■□□ 2.31
CPSF4-204ENST00000436336 CANXP27824 592 aaKnown RBP29.46■■■□□ 2.31
CPSF4-204ENST00000436336 FRAT1Q92837 279 aaPredicted RBP29.46■■■□□ 2.31
CPSF4-204ENST00000436336 STK31Q9BXU1 1019 aa29.46■■■□□ 2.31
CPSF4-204ENST00000436336 RGS12O14924 1447 aa29.46■■■□□ 2.31
CPSF4-204ENST00000436336 KCNQ2O43526 872 aa29.45■■■□□ 2.31
CPSF4-204ENST00000436336 EIF2S2P20042 333 aaKnown RBP29.45■■■□□ 2.31
CPSF4-204ENST00000436336 PRAMEF22A3QJZ6 481 aa29.45■■■□□ 2.3
CPSF4-204ENST00000436336 PTCD1O75127 700 aaKnown RBP29.44■■■□□ 2.3
CPSF4-204ENST00000436336 ZKSCAN2Q63HK3 967 aa29.43■■■□□ 2.3
CPSF4-204ENST00000436336 VSIG10Q8N0Z9 540 aa29.43■■■□□ 2.3
CPSF4-204ENST00000436336 NECTIN2Q92692 538 aa29.43■■■□□ 2.3
CPSF4-204ENST00000436336 NOB1Q9ULX3 412 aaKnown RBP29.43■■■□□ 2.3
CPSF4-204ENST00000436336 IPO8O15397 1037 aaKnown RBP29.42■■■□□ 2.3
CPSF4-204ENST00000436336 SLC4A2P04920 1241 aa29.42■■■□□ 2.3
CPSF4-204ENST00000436336 FAM196AQ6ZSG2 479 aa29.42■■■□□ 2.3
CPSF4-204ENST00000436336 CICQ96RK0 1608 aaPredicted RBP29.41■■■□□ 2.3
CPSF4-204ENST00000436336 ZNF831Q5JPB2 1677 aa29.41■■■□□ 2.3
CPSF4-204ENST00000436336 IRX6P78412 446 aaPredicted RBP29.41■■■□□ 2.3
CPSF4-204ENST00000436336 SMARCC1Q92922 1105 aaPredicted RBP29.41■■■□□ 2.3
CPSF4-204ENST00000436336 TJP1Q07157 1748 aa29.41■■■□□ 2.3
CPSF4-204ENST00000436336 ARHGAP45Q92619 1136 aa29.4■■■□□ 2.3
CPSF4-204ENST00000436336 GTF3C3Q9Y5Q9 886 aa29.4■■■□□ 2.3
CPSF4-204ENST00000436336 FKBP8Q14318 412 aa29.4■■■□□ 2.3
CPSF4-204ENST00000436336 RBM42Q9BTD8 480 aaKnown RBP29.4■■■□□ 2.3
CPSF4-204ENST00000436336 USP16Q9Y5T5 823 aa29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms