RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 RNF214Q8ND24 703 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 HLA-DOAP06340 250 aa13.02□□□□□ -0.32
SCN4A-201ENST00000435607 MAP3K12Q12852 859 aa13.02□□□□□ -0.32
SCN4A-201ENST00000435607 A0A087WZG4 1122 aa13.02□□□□□ -0.32
SCN4A-201ENST00000435607 MCM3P25205 808 aa13.02□□□□□ -0.32
SCN4A-201ENST00000435607 ACTN2P35609 894 aa13.02□□□□□ -0.32
SCN4A-201ENST00000435607 PRKRIP1Q9H875 184 aaPredicted RBP13.02□□□□□ -0.32
SCN4A-201ENST00000435607 ARHGAP29Q52LW3 1261 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 SULT6B1Q6IMI4 303 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 SLC5A1P13866 664 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 GBP3Q9H0R5 595 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 RAB3IL1Q8TBN0 382 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 DDX12PQ92771 950 aa13.02□□□□□ -0.33
SCN4A-201ENST00000435607 PPP4R3BQ5MIZ7 849 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 RNF41Q9H4P4 317 aaPredicted RBP13.01□□□□□ -0.33
SCN4A-201ENST00000435607 CLEC11AQ9Y240 323 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 NAPBQ9H115 298 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 CUX1P39880 1505 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 MINDY4BA8MYZ0 360 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 LDHCP07864 332 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 PRAM1Q96QH2 718 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 LMAN1P49257 510 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 TAF3Q5VWG9 929 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.01□□□□□ -0.33
SCN4A-201ENST00000435607 FAM193AP78312 1265 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 CDK19Q9BWU1 502 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 MAP9Q49MG5 647 aa13.01□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC117Q8IWD4 279 aaPredicted RBP13□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC113Q9H0I3 377 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 TMEM132EQ6IEE7 984 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 SPATA32Q96LK8 384 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 PPP6R1Q9UPN7 881 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 SMC1AQ14683 1233 aaKnown RBP13□□□□□ -0.33
SCN4A-201ENST00000435607 USP37Q86T82 979 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 CFAP57Q96MR6 1250 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 MACROD2A1Z1Q3 448 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 C6orf229H3BNL8 230 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 BAG3O95817 575 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 ZNF354CQ86Y25 554 aa13□□□□□ -0.33
SCN4A-201ENST00000435607 UPF3BQ9BZI7 483 aaKnown RBP13□□□□□ -0.33
SCN4A-201ENST00000435607 ST5P78524 1137 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 AMPD3Q01432 767 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SPC24Q8NBT2 197 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 CRACR2AQ9BSW2 395 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SPTY2D1Q68D10 685 aaPredicted RBP12.99□□□□□ -0.33
SCN4A-201ENST00000435607 IFFO1Q0D2I5 559 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 FAM177A1Q8N128 213 aaPredicted RBP12.99□□□□□ -0.33
SCN4A-201ENST00000435607 HDAC9Q9UKV0 1011 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC174Q6PII3 467 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SLC52A1Q9NWF4 448 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SRGAP3O43295 1099 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 LIG1P18858 919 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 LUZP1Q86V48 1076 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SYCP3Q8IZU3 236 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 PANK1Q8TE04 598 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 SAMM50Q9Y512 469 aa12.99□□□□□ -0.33
SCN4A-201ENST00000435607 FSD2A1L4K1 749 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 PRPF40AO75400 957 aaKnown RBP12.98□□□□□ -0.33
SCN4A-201ENST00000435607 PDRG1Q9NUG6 133 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 RTEL1-TNFRSF6BF6WH68 1400 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 TAF12Q16514 161 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 LRPPRCP42704 1394 aaKnown RBP12.98□□□□□ -0.33
SCN4A-201ENST00000435607 ZWINTO95229 277 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 GRM1Q13255 1194 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
SCN4A-201ENST00000435607 USO1O60763 962 aaKnown RBP12.98□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC178Q5BJE1 867 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC82Q8N4S0 544 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 CALML4Q96GE6 196 aa12.98□□□□□ -0.33
SCN4A-201ENST00000435607 IFIT5Q13325 482 aaKnown RBP12.98□□□□□ -0.33
SCN4A-201ENST00000435607 CATIPQ7Z7H3 387 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 LRRC27Q9C0I9 530 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 GOPCQ9HD26 462 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 KIF5BP33176 963 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC172P0C7W6 258 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 IKBKGQ9Y6K9 419 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 CCDC194A0A1B0GVG4 234 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 STX6O43752 255 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 PYM1Q9BRP8 204 aaKnown RBP12.97□□□□□ -0.33
SCN4A-201ENST00000435607 CDC5LQ99459 802 aaKnown RBP12.97□□□□□ -0.33
SCN4A-201ENST00000435607 SYNCQ9H7C4 482 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 DDX46Q7L014 1031 aaKnown RBP12.97□□□□□ -0.33
SCN4A-201ENST00000435607 BICD1Q96G01 975 aa12.97□□□□□ -0.33
SCN4A-201ENST00000435607 ZMYND15Q9H091 742 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 PLVAPQ9BX97 442 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 GNAT3A8MTJ3 354 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 ADAMTS2O95450 1211 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 PAFAH1B1P43034 410 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 UBE4AQ14139 1066 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 TCP11L2Q8N4U5 519 aa12.96□□□□□ -0.33
SCN4A-201ENST00000435607 PUF60Q9UHX1 559 aaKnown RBP12.96□□□□□ -0.33
SCN4A-201ENST00000435607 RANBP6O60518 1105 aaKnown RBP12.96□□□□□ -0.34
SCN4A-201ENST00000435607 CKAP2LQ8IYA6 745 aa12.96□□□□□ -0.34
SCN4A-201ENST00000435607 ZNF622Q969S3 477 aaKnown RBP eCLIP12.96□□□□□ -0.34
SCN4A-201ENST00000435607 NAA15Q9BXJ9 866 aaKnown RBP12.96□□□□□ -0.34
SCN4A-201ENST00000435607 CFAP100Q494V2 611 aa12.95□□□□□ -0.34
SCN4A-201ENST00000435607 CCDC102AQ96A19 550 aa12.95□□□□□ -0.34
SCN4A-201ENST00000435607 BEGAINQ9BUH8 593 aa12.95□□□□□ -0.34
SCN4A-201ENST00000435607 ARL1P40616 181 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms