RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 TMEM229AB2RXF0 380 aa9.96□□□□□ -0.82
USP54-206ENST00000433394 SIAH2O43255 324 aa9.96□□□□□ -0.82
USP54-206ENST00000433394 LGR5O75473 907 aa9.96□□□□□ -0.82
USP54-206ENST00000433394 GTF2E1P29083 439 aaPredicted RBP9.96□□□□□ -0.82
USP54-206ENST00000433394 ZNF697Q5TEC3 545 aa9.95□□□□□ -0.82
USP54-206ENST00000433394 NBPF15Q8N660 670 aa9.95□□□□□ -0.82
USP54-206ENST00000433394 GTF3C2Q8WUA4 911 aaPredicted RBP9.95□□□□□ -0.82
USP54-206ENST00000433394 CHMP7Q8WUX9 453 aaPredicted RBP9.95□□□□□ -0.82
USP54-206ENST00000433394 ATAD2Q6PL18 1390 aa9.95□□□□□ -0.82
USP54-206ENST00000433394 E9PSI1 815 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 C21orf2O43822 256 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 PPP1R12BO60237 982 aaPredicted RBP9.94□□□□□ -0.82
USP54-206ENST00000433394 ICMTO60725 284 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 SCNN1DP51172 638 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 FKBP4Q02790 459 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP54-206ENST00000433394 FKBP5Q13451 457 aaPredicted RBP9.94□□□□□ -0.82
USP54-206ENST00000433394 SPRYD7Q5W111 196 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 TNS4Q8IZW8 715 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 ETNK1Q9HBU6 452 aa9.94□□□□□ -0.82
USP54-206ENST00000433394 FOXC1Q12948 553 aa9.93□□□□□ -0.82
USP54-206ENST00000433394 ZNF211Q13398 564 aaPredicted RBP9.93□□□□□ -0.82
USP54-206ENST00000433394 NNTQ13423 1086 aa9.93□□□□□ -0.82
USP54-206ENST00000433394 TTC24A2A3L6 582 aaPredicted RBP9.92□□□□□ -0.82
USP54-206ENST00000433394 LILRA1O75019 489 aa9.92□□□□□ -0.82
USP54-206ENST00000433394 ZNF598Q86UK7 904 aaKnown RBP9.92□□□□□ -0.82
USP54-206ENST00000433394 NLRP3Q96P20 1036 aa9.92□□□□□ -0.82
USP54-206ENST00000433394 SLC4A9Q96Q91 983 aa9.92□□□□□ -0.82
USP54-206ENST00000433394 ARHGEF10LQ9HCE6 1279 aa9.92□□□□□ -0.82
USP54-206ENST00000433394 A6NJY4 79 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 FAM13AO94988 1023 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 ADH1AP07327 375 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 SCNN1AP37088 669 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 SMTNP53814 917 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 PSMA6P60900 246 aaKnown RBP9.91□□□□□ -0.82
USP54-206ENST00000433394 ZSCAN29Q8IWY8 852 aaPredicted RBP9.91□□□□□ -0.82
USP54-206ENST00000433394 SNIP1Q8TAD8 396 aaKnown RBP9.91□□□□□ -0.82
USP54-206ENST00000433394 ANO2Q9NQ90 1003 aa9.91□□□□□ -0.82
USP54-206ENST00000433394 TLR1Q15399 786 aa9.9□□□□□ -0.82
USP54-206ENST00000433394 CYP4X1Q8N118 509 aa9.9□□□□□ -0.82
USP54-206ENST00000433394 HELQQ8TDG4 1101 aa9.9□□□□□ -0.82
USP54-206ENST00000433394 IRX2Q9BZI1 471 aaPredicted RBP9.9□□□□□ -0.82
USP54-206ENST00000433394 TSPAN10Q9H1Z9 355 aaPredicted RBP9.9□□□□□ -0.82
USP54-206ENST00000433394 SEPT3Q9UH03 358 aa9.9□□□□□ -0.82
USP54-206ENST00000433394 NR3C2P08235 984 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 MAPK1P28482 360 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 NAA30Q147X3 362 aaPredicted RBP9.89□□□□□ -0.83
USP54-206ENST00000433394 SLC9A9Q8IVB4 645 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 STAG2Q8N3U4 1231 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 CNKSR1Q969H4 720 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 RAB6BQ9NRW1 208 aa9.89□□□□□ -0.83
USP54-206ENST00000433394 SCHIP1Q9P0W5 487 aaPredicted RBP9.89□□□□□ -0.83
USP54-206ENST00000433394 V9GY48 417 aaPredicted RBP9.89□□□□□ -0.83
USP54-206ENST00000433394 C16orf46Q6P387 395 aa9.88□□□□□ -0.83
USP54-206ENST00000433394 XAGE2Q96GT9 111 aa9.88□□□□□ -0.83
USP54-206ENST00000433394 ESYT1Q9BSJ8 1104 aa9.88□□□□□ -0.83
USP54-206ENST00000433394 DNMT3AQ9Y6K1 912 aaPredicted RBP9.88□□□□□ -0.83
USP54-206ENST00000433394 ADD1P35611 737 aaKnown RBP9.87□□□□□ -0.83
USP54-206ENST00000433394 AAMPQ13685 434 aa9.87□□□□□ -0.83
USP54-206ENST00000433394 ALKBH2Q6NS38 261 aa9.87□□□□□ -0.83
USP54-206ENST00000433394 DCTN4Q9UJW0 460 aa9.87□□□□□ -0.83
USP54-206ENST00000433394 MEN1O00255 615 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 CDK2AP1O14519 115 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 STAU1O95793 577 aaKnown RBP9.86□□□□□ -0.83
USP54-206ENST00000433394 EPHA4P54764 986 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 WDR4P57081 412 aaKnown RBP9.86□□□□□ -0.83
USP54-206ENST00000433394 CLN3Q13286 438 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 MTFR1Q15390 333 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 PRKD2Q9BZL6 878 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 ZNF232Q9UNY5 417 aa9.86□□□□□ -0.83
USP54-206ENST00000433394 A0A1W2PRU2 124 aa9.85□□□□□ -0.83
USP54-206ENST00000433394 NDUFB5O43674 189 aa9.85□□□□□ -0.83
USP54-206ENST00000433394 ZIC2O95409 532 aaPredicted RBP9.85□□□□□ -0.83
USP54-206ENST00000433394 PTGIRP43119 386 aa9.85□□□□□ -0.83
USP54-206ENST00000433394 ZNF326Q5BKZ1 582 aaKnown RBP9.85□□□□□ -0.83
USP54-206ENST00000433394 EMID1Q96A84 441 aaPredicted RBP9.85□□□□□ -0.83
USP54-206ENST00000433394 BCL2L13Q9BXK5 485 aa9.85□□□□□ -0.83
USP54-206ENST00000433394 SERTM1A2A2V5 107 aa9.84□□□□□ -0.83
USP54-206ENST00000433394 UPP2O95045 317 aa9.84□□□□□ -0.83
USP54-206ENST00000433394 TMEM214Q6NUQ4 689 aaKnown RBP9.84□□□□□ -0.83
USP54-206ENST00000433394 ABTB2Q8N961 1025 aa9.84□□□□□ -0.83
USP54-206ENST00000433394 C2orf49Q9BVC5 232 aaPredicted RBP9.84□□□□□ -0.83
USP54-206ENST00000433394 CABP1Q9NZU7 370 aa9.84□□□□□ -0.83
USP54-206ENST00000433394 ANKRD33BA6NCL7 494 aa9.83□□□□□ -0.84
USP54-206ENST00000433394 IL2RAP01589 272 aa9.83□□□□□ -0.84
USP54-206ENST00000433394 FOXK2Q01167 660 aa9.83□□□□□ -0.84
USP54-206ENST00000433394 DNAJC14Q6Y2X3 702 aaPredicted RBP9.83□□□□□ -0.84
USP54-206ENST00000433394 PURBQ96QR8 312 aaKnown RBP9.83□□□□□ -0.84
USP54-206ENST00000433394 ZSCAN10Q96SZ4 725 aaPredicted RBP9.83□□□□□ -0.84
USP54-206ENST00000433394 BRPF3Q9ULD4 1205 aa9.83□□□□□ -0.84
USP54-206ENST00000433394 RBM47A0AV96 593 aaKnown RBP9.82□□□□□ -0.84
USP54-206ENST00000433394 CBLBQ13191 982 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 MTMR3Q13615 1198 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 GNASQ5JWF2 1037 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 TBCELQ5QJ74 424 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 Q6ZVU0 165 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 TMC1Q8TDI8 760 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 ITPKCQ96DU7 683 aa9.82□□□□□ -0.84
USP54-206ENST00000433394 NIFKQ9BYG3 293 aaKnown RBP9.82□□□□□ -0.84
USP54-206ENST00000433394 RELBQ01201 579 aa9.81□□□□□ -0.84
USP54-206ENST00000433394 CENPCQ03188 943 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms