RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 SALL2Q9Y467 1007 aaPredicted RBP14.38□□□□□ -0.11
CHD4-202ENST00000430771 SENP3-EIF4A1A0A087X0R7 540 aa14.37□□□□□ -0.11
CHD4-202ENST00000430771 THUMPD2Q9BTF0 503 aaKnown RBP14.37□□□□□ -0.11
CHD4-202ENST00000430771 LGR6Q9HBX8 967 aa14.37□□□□□ -0.11
CHD4-202ENST00000430771 IL16Q14005 1332 aa14.37□□□□□ -0.11
CHD4-202ENST00000430771 WDR63Q8IWG1 891 aa14.36□□□□□ -0.11
CHD4-202ENST00000430771 ZNF521Q96K83 1311 aa14.36□□□□□ -0.11
CHD4-202ENST00000430771 PRIM1P49642 420 aaKnown RBP14.35□□□□□ -0.11
CHD4-202ENST00000430771 GNAI1P63096 354 aa14.35□□□□□ -0.11
CHD4-202ENST00000430771 BCL11BQ9C0K0 894 aaPredicted RBP14.35□□□□□ -0.11
CHD4-202ENST00000430771 IFT57Q9NWB7 429 aa14.35□□□□□ -0.11
CHD4-202ENST00000430771 BABAM1Q9NWV8 329 aa14.35□□□□□ -0.11
CHD4-202ENST00000430771 LY75O60449 1722 aa14.35□□□□□ -0.11
CHD4-202ENST00000430771 CICQ96RK0 1608 aaPredicted RBP14.34□□□□□ -0.11
CHD4-202ENST00000430771 BTBD11A6QL63 1104 aa14.34□□□□□ -0.11
CHD4-202ENST00000430771 TAF7Q15545 349 aaPredicted RBP14.34□□□□□ -0.11
CHD4-202ENST00000430771 TTC5Q8N0Z6 440 aa14.34□□□□□ -0.11
CHD4-202ENST00000430771 NFATC2IPQ8NCF5 419 aa14.34□□□□□ -0.11
CHD4-202ENST00000430771 YTHDC1Q96MU7 727 aaKnown RBP14.34□□□□□ -0.11
CHD4-202ENST00000430771 LAMB4A4D0S4 1761 aa14.34□□□□□ -0.11
CHD4-202ENST00000430771 ZNF831Q5JPB2 1677 aa14.33□□□□□ -0.11
CHD4-202ENST00000430771 KCPQ6ZWJ8 1503 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 TRIM37O94972 964 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 GOLGA2Q08379 1002 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 PIGBQ92521 554 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 SMARCC1Q92922 1105 aaPredicted RBP14.33□□□□□ -0.12
CHD4-202ENST00000430771 CFAP44Q96MT7 982 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 TSPYL4Q9UJ04 414 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 PALLDQ8WX93 1383 aa14.33□□□□□ -0.12
CHD4-202ENST00000430771 KCNQ2O43526 872 aa14.32□□□□□ -0.12
CHD4-202ENST00000430771 MYH16Q9H6N6 1097 aa14.32□□□□□ -0.12
CHD4-202ENST00000430771 E9PSI1 815 aa14.31□□□□□ -0.12
CHD4-202ENST00000430771 SF3B2Q13435 895 aaKnown RBP14.31□□□□□ -0.12
CHD4-202ENST00000430771 LAS1LQ9Y4W2 734 aaKnown RBP14.31□□□□□ -0.12
CHD4-202ENST00000430771 ZNF790Q6PG37 636 aa14.3□□□□□ -0.12
CHD4-202ENST00000430771 C5P01031 1676 aa14.3□□□□□ -0.12
CHD4-202ENST00000430771 TJP1Q07157 1748 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 CHL1O00533 1208 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 ZNF853P0CG23 659 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 MBIPQ9NS73 344 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 FANCIQ9NVI1 1328 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 RREB1Q92766 1687 aa14.29□□□□□ -0.12
CHD4-202ENST00000430771 COL5A3P25940 1745 aaPredicted RBP14.28□□□□□ -0.12
CHD4-202ENST00000430771 CCDC125Q86Z20 511 aa14.28□□□□□ -0.12
CHD4-202ENST00000430771 FMNL2Q96PY5 1086 aa14.28□□□□□ -0.12
CHD4-202ENST00000430771 ATG3Q9NT62 314 aa14.28□□□□□ -0.12
CHD4-202ENST00000430771 HEG1Q9ULI3 1381 aa14.27□□□□□ -0.12
CHD4-202ENST00000430771 BAG6P46379 1132 aa14.27□□□□□ -0.13
CHD4-202ENST00000430771 SLC39A6Q13433 755 aa14.27□□□□□ -0.13
CHD4-202ENST00000430771 ASAP1Q9ULH1 1129 aa14.27□□□□□ -0.13
CHD4-202ENST00000430771 EP400Q96L91 3159 aa14.27□□□□□ -0.13
CHD4-202ENST00000430771 TAF1LQ8IZX4 1826 aa14.27□□□□□ -0.13
CHD4-202ENST00000430771 APBA3O96018 575 aa14.26□□□□□ -0.13
CHD4-202ENST00000430771 HMGB2P26583 209 aaKnown RBP14.26□□□□□ -0.13
CHD4-202ENST00000430771 SLFN5Q08AF3 891 aa14.26□□□□□ -0.13
CHD4-202ENST00000430771 PTF1AQ7RTS3 328 aa14.26□□□□□ -0.13
CHD4-202ENST00000430771 TSR2Q969E8 191 aaKnown RBP14.26□□□□□ -0.13
CHD4-202ENST00000430771 MIS18AQ9NYP9 233 aa14.26□□□□□ -0.13
CHD4-202ENST00000430771 SOS1Q07889 1333 aaPredicted RBP14.25□□□□□ -0.13
CHD4-202ENST00000430771 EIF4A1P60842 406 aaKnown RBP14.25□□□□□ -0.13
CHD4-202ENST00000430771 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
CHD4-202ENST00000430771 RBM42Q9BTD8 480 aaKnown RBP14.25□□□□□ -0.13
CHD4-202ENST00000430771 NUP188Q5SRE5 1749 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 LOC102724428A0A0B4J2F2 783 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 PLSCR1O15162 318 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 KCNQ3O43525 872 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 PTCD1O75127 700 aaKnown RBP14.24□□□□□ -0.13
CHD4-202ENST00000430771 HOXB7P09629 217 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 SIK1P57059 783 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 SLC27A3Q5K4L6 730 aa14.24□□□□□ -0.13
CHD4-202ENST00000430771 ZNF496Q96IT1 587 aaPredicted RBP14.24□□□□□ -0.13
CHD4-202ENST00000430771 SPINK5Q9NQ38 1064 aaPredicted RBP14.24□□□□□ -0.13
CHD4-202ENST00000430771 CCNL1Q9UK58 526 aaPredicted RBP14.24□□□□□ -0.13
CHD4-202ENST00000430771 CDCA7LQ96GN5 454 aa14.23□□□□□ -0.13
CHD4-202ENST00000430771 C4BP0C0L5 1744 aa14.23□□□□□ -0.13
CHD4-202ENST00000430771 SNRPA1P09661 255 aaKnown RBP14.22□□□□□ -0.13
CHD4-202ENST00000430771 ATP6V1AP38606 617 aa14.22□□□□□ -0.13
CHD4-202ENST00000430771 DUSP27Q5VZP5 1158 aa14.22□□□□□ -0.13
CHD4-202ENST00000430771 TEX13AQ9BXU3 409 aaPredicted RBP14.22□□□□□ -0.13
CHD4-202ENST00000430771 CHMP4AQ9BY43 222 aa14.22□□□□□ -0.13
CHD4-202ENST00000430771 CT47B1P0C2W7 299 aaPredicted RBP14.21□□□□□ -0.13
CHD4-202ENST00000430771 TRMT2AQ8IZ69 625 aaKnown RBP14.21□□□□□ -0.13
CHD4-202ENST00000430771 UPF1Q92900 1129 aaKnown RBP eCLIP14.21□□□□□ -0.13
CHD4-202ENST00000430771 GIGYF1O75420 1035 aaPredicted RBP14.2□□□□□ -0.14
CHD4-202ENST00000430771 EXOSC9Q06265 439 aaKnown RBP14.2□□□□□ -0.14
CHD4-202ENST00000430771 TXNRD1Q16881 649 aa14.2□□□□□ -0.14
CHD4-202ENST00000430771 TWISTNBQ3B726 338 aaPredicted RBP14.2□□□□□ -0.14
CHD4-202ENST00000430771 SOCS7O14512 581 aa14.19□□□□□ -0.14
CHD4-202ENST00000430771 STARD3NLO95772 234 aa14.19□□□□□ -0.14
CHD4-202ENST00000430771 EN1Q05925 392 aaPredicted RBP14.19□□□□□ -0.14
CHD4-202ENST00000430771 ERBB4Q15303 1308 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 CNTNAP4Q9C0A0 1308 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 CACNA1FO60840 1977 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 KRT24Q2M2I5 525 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 HDGFL1Q5TGJ6 251 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 DNAJC10Q8IXB1 793 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 ZNF428Q96B54 188 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 SLC4A9Q96Q91 983 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 CAMKK2Q96RR4 588 aa14.18□□□□□ -0.14
CHD4-202ENST00000430771 QSER1Q2KHR3 1735 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms