RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 ARHGAP27Q6ZUM4 889 aa12.02□□□□□ -0.49
HDAC1-202ENST00000428704 BCS1LQ9Y276 419 aa12.02□□□□□ -0.49
HDAC1-202ENST00000428704 USP47Q96K76 1375 aa12.02□□□□□ -0.49
HDAC1-202ENST00000428704 SMC1BQ8NDV3 1235 aa12.01□□□□□ -0.49
HDAC1-202ENST00000428704 ANKRD24Q8TF21 1146 aa12.01□□□□□ -0.49
HDAC1-202ENST00000428704 KDM2BQ8NHM5 1336 aa12.01□□□□□ -0.49
HDAC1-202ENST00000428704 NSD2O96028 1365 aa12.01□□□□□ -0.49
HDAC1-202ENST00000428704 FAM161AQ3B820 660 aa12□□□□□ -0.49
HDAC1-202ENST00000428704 RTN4Q9NQC3 1192 aaKnown RBP12□□□□□ -0.49
HDAC1-202ENST00000428704 TTC21BQ7Z4L5 1316 aa12□□□□□ -0.49
HDAC1-202ENST00000428704 PLEKHG2Q9H7P9 1386 aa12□□□□□ -0.49
HDAC1-202ENST00000428704 NFAT5O94916 1531 aa12□□□□□ -0.49
HDAC1-202ENST00000428704 RGPD5Q99666 1765 aa12□□□□□ -0.49
HDAC1-202ENST00000428704 ST20-MTHFSA0A0A6YYL1 179 aa11.99□□□□□ -0.49
HDAC1-202ENST00000428704 HMGB2P26583 209 aaKnown RBP11.99□□□□□ -0.49
HDAC1-202ENST00000428704 C9orf131Q5VYM1 1079 aa11.99□□□□□ -0.49
HDAC1-202ENST00000428704 KAT6BQ8WYB5 2073 aa11.98□□□□□ -0.49
HDAC1-202ENST00000428704 KTN1Q86UP2 1357 aaKnown RBP11.98□□□□□ -0.49
HDAC1-202ENST00000428704 TTC21AQ8NDW8 1320 aa11.98□□□□□ -0.49
HDAC1-202ENST00000428704 PHF14O94880 888 aa11.98□□□□□ -0.49
HDAC1-202ENST00000428704 ZNF579Q8NAF0 562 aaKnown RBP11.98□□□□□ -0.49
HDAC1-202ENST00000428704 AK7Q96M32 723 aa11.98□□□□□ -0.49
HDAC1-202ENST00000428704 RRAGCQ9HB90 399 aa11.98□□□□□ -0.49
HDAC1-202ENST00000428704 LTN1O94822 1766 aa11.97□□□□□ -0.49
HDAC1-202ENST00000428704 A0A1W2PP64 1363 aa11.97□□□□□ -0.49
HDAC1-202ENST00000428704 KCPQ6ZWJ8 1503 aa11.96□□□□□ -0.49
HDAC1-202ENST00000428704 FCHSD2O94868 740 aa11.96□□□□□ -0.49
HDAC1-202ENST00000428704 CENPBP07199 599 aaPredicted RBP11.96□□□□□ -0.49
HDAC1-202ENST00000428704 PUS7Q96PZ0 661 aaKnown RBP11.96□□□□□ -0.49
HDAC1-202ENST00000428704 LY75O60449 1722 aa11.96□□□□□ -0.49
HDAC1-202ENST00000428704 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
HDAC1-202ENST00000428704 EDC4Q6P2E9 1401 aaKnown RBP11.95□□□□□ -0.5
HDAC1-202ENST00000428704 C10orf71Q711Q0 1435 aa11.95□□□□□ -0.5
HDAC1-202ENST00000428704 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.95□□□□□ -0.5
HDAC1-202ENST00000428704 A0A0G2JLW4 131 aa11.95□□□□□ -0.5
HDAC1-202ENST00000428704 CHRM1P11229 460 aaPredicted RBP11.95□□□□□ -0.5
HDAC1-202ENST00000428704 SLC12A5Q9H2X9 1139 aa11.95□□□□□ -0.5
HDAC1-202ENST00000428704 USP31Q70CQ4 1352 aa11.94□□□□□ -0.5
HDAC1-202ENST00000428704 PYGBP11216 843 aa11.94□□□□□ -0.5
HDAC1-202ENST00000428704 TGFB2P61812 414 aa11.94□□□□□ -0.5
HDAC1-202ENST00000428704 SMIM5Q71RC9 77 aa11.94□□□□□ -0.5
HDAC1-202ENST00000428704 NSD3Q9BZ95 1437 aa11.94□□□□□ -0.5
HDAC1-202ENST00000428704 KIF20BQ96Q89 1820 aa11.93□□□□□ -0.5
HDAC1-202ENST00000428704 AMIGO3Q86WK7 504 aa11.93□□□□□ -0.5
HDAC1-202ENST00000428704 ZCRB1Q8TBF4 217 aaKnown RBP11.93□□□□□ -0.5
HDAC1-202ENST00000428704 PRDM10Q9NQV6 1147 aa11.93□□□□□ -0.5
HDAC1-202ENST00000428704 RNF181Q9P0P0 153 aa11.93□□□□□ -0.5
HDAC1-202ENST00000428704 DOT1LQ8TEK3 1739 aa11.93□□□□□ -0.5
HDAC1-202ENST00000428704 PALLDQ8WX93 1383 aa11.92□□□□□ -0.5
HDAC1-202ENST00000428704 FOXN1O15353 648 aa11.92□□□□□ -0.5
HDAC1-202ENST00000428704 ECM2O94769 699 aaPredicted RBP11.92□□□□□ -0.5
HDAC1-202ENST00000428704 MMP10P09238 476 aa11.92□□□□□ -0.5
HDAC1-202ENST00000428704 TMC1Q8TDI8 760 aa11.92□□□□□ -0.5
HDAC1-202ENST00000428704 LTV1Q96GA3 475 aaPredicted RBP11.92□□□□□ -0.5
HDAC1-202ENST00000428704 PHF12Q96QT6 1004 aa11.92□□□□□ -0.5
HDAC1-202ENST00000428704 SSFA2P28290 1259 aa11.91□□□□□ -0.5
HDAC1-202ENST00000428704 MLLT1Q03111 559 aaPredicted RBP11.91□□□□□ -0.5
HDAC1-202ENST00000428704 NME9Q86XW9 330 aa11.91□□□□□ -0.5
HDAC1-202ENST00000428704 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.91□□□□□ -0.5
HDAC1-202ENST00000428704 KIF12Q96FN5 646 aa11.91□□□□□ -0.5
HDAC1-202ENST00000428704 C5P01031 1676 aa11.91□□□□□ -0.5
HDAC1-202ENST00000428704 DPEP1P16444 411 aa11.9□□□□□ -0.5
HDAC1-202ENST00000428704 HDGFL2Q7Z4V5 671 aaPredicted RBP11.9□□□□□ -0.5
HDAC1-202ENST00000428704 AIDAQ96BJ3 306 aa11.9□□□□□ -0.5
HDAC1-202ENST00000428704 TERF2IPQ9NYB0 399 aa11.9□□□□□ -0.5
HDAC1-202ENST00000428704 MKRN1Q9UHC7 482 aaKnown RBP11.9□□□□□ -0.5
HDAC1-202ENST00000428704 SLC24A1O60721 1099 aa11.89□□□□□ -0.51
HDAC1-202ENST00000428704 CTCFP49711 727 aaPredicted RBP11.89□□□□□ -0.51
HDAC1-202ENST00000428704 CLCN6P51797 869 aa11.89□□□□□ -0.51
HDAC1-202ENST00000428704 TMF1P82094 1093 aa11.89□□□□□ -0.51
HDAC1-202ENST00000428704 ABHD8Q96I13 439 aa11.89□□□□□ -0.51
HDAC1-202ENST00000428704 MPRIPQ6WCQ1 1025 aa11.88□□□□□ -0.51
HDAC1-202ENST00000428704 C4BP0C0L5 1744 aa11.87□□□□□ -0.51
HDAC1-202ENST00000428704 MAP3K13O43283 966 aa11.87□□□□□ -0.51
HDAC1-202ENST00000428704 VEGFAP15692 232 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-202ENST00000428704 EIF4G2P78344 907 aaKnown RBP eCLIP11.87□□□□□ -0.512e-8■■■■■ 38.7
HDAC1-202ENST00000428704 SMARCC1Q92922 1105 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-202ENST00000428704 CCDC87Q9NVE4 849 aa11.87□□□□□ -0.51
HDAC1-202ENST00000428704 FAM208AQ9UK61 1670 aaKnown RBP11.87□□□□□ -0.51
HDAC1-202ENST00000428704 GNPATO15228 680 aa11.86□□□□□ -0.51
HDAC1-202ENST00000428704 IP6K1Q92551 441 aa11.86□□□□□ -0.51
HDAC1-202ENST00000428704 TNRC6CQ9HCJ0 1690 aaKnown RBP11.86□□□□□ -0.51
HDAC1-202ENST00000428704 ANKRD26Q9UPS8 1709 aa11.86□□□□□ -0.51
HDAC1-202ENST00000428704 MEGF6O75095 1541 aa11.86□□□□□ -0.51
HDAC1-202ENST00000428704 RGPD2P0DJD1 1756 aa11.85□□□□□ -0.51
HDAC1-202ENST00000428704 DALRD3Q5D0E6 543 aaKnown RBP11.85□□□□□ -0.51
HDAC1-202ENST00000428704 SP7Q8TDD2 431 aaPredicted RBP11.85□□□□□ -0.51
HDAC1-202ENST00000428704 DCAF5Q96JK2 942 aa11.85□□□□□ -0.51
HDAC1-202ENST00000428704 PIM2Q9P1W9 311 aa11.85□□□□□ -0.51
HDAC1-202ENST00000428704 TOGARAM1Q9Y4F4 1720 aa11.84□□□□□ -0.51
HDAC1-202ENST00000428704 CCDC85CA6NKD9 419 aa11.84□□□□□ -0.51
HDAC1-202ENST00000428704 HSPA5P11021 654 aaKnown RBP11.84□□□□□ -0.51
HDAC1-202ENST00000428704 LBX1P52954 281 aa11.84□□□□□ -0.51
HDAC1-202ENST00000428704 DDX10Q13206 875 aaKnown RBP11.84□□□□□ -0.51
HDAC1-202ENST00000428704 PCDHB13Q9Y5F0 798 aa11.84□□□□□ -0.51
HDAC1-202ENST00000428704 ZC3H4Q9UPT8 1303 aaKnown RBP11.84□□□□□ -0.51
HDAC1-202ENST00000428704 PKD1L3Q7Z443 1732 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 N4BP2Q86UW6 1770 aaPredicted RBP11.83□□□□□ -0.52
HDAC1-202ENST00000428704 GLTPD2A6NH11 291 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 CDCA8Q53HL2 280 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms