RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 TMOD3Q9NYL9 352 aa10.28□□□□□ -0.76
HMGA1P4-201ENST00000428643 TSPYL4Q9UJ04 414 aa10.28□□□□□ -0.76
HMGA1P4-201ENST00000428643 ADAMTS7Q9UKP4 1686 aa10.28□□□□□ -0.76
HMGA1P4-201ENST00000428643 ERVV-2B6SEH9 535 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 TAF7Q15545 349 aaPredicted RBP10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 FAM182BQ5T319 152 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 KRT27Q7Z3Y8 459 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 NFATC2IPQ8NCF5 419 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 MBIPQ9NS73 344 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 MIS18AQ9NYP9 233 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 DLG5Q8TDM6 1919 aa10.27□□□□□ -0.77
HMGA1P4-201ENST00000428643 BTBD11A6QL63 1104 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 CHL1O00533 1208 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 ZNF853P0CG23 659 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 DUSP27Q5VZP5 1158 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 ACSBG1Q96GR2 724 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 TOGARAM1Q9Y4F4 1720 aa10.26□□□□□ -0.77
HMGA1P4-201ENST00000428643 DOT1LQ8TEK3 1739 aa10.25□□□□□ -0.77
HMGA1P4-201ENST00000428643 PRIM1P49642 420 aaKnown RBP10.25□□□□□ -0.77
HMGA1P4-201ENST00000428643 TTC5Q8N0Z6 440 aa10.25□□□□□ -0.77
HMGA1P4-201ENST00000428643 BABAM1Q9NWV8 329 aa10.25□□□□□ -0.77
HMGA1P4-201ENST00000428643 EXOSC9Q06265 439 aaKnown RBP10.24□□□□□ -0.77
HMGA1P4-201ENST00000428643 PIGBQ92521 554 aa10.24□□□□□ -0.77
HMGA1P4-201ENST00000428643 SCN11AQ9UI33 1791 aa10.24□□□□□ -0.77
HMGA1P4-201ENST00000428643 BCL9O00512 1426 aa10.24□□□□□ -0.77
HMGA1P4-201ENST00000428643 KCNQ3O43525 872 aa10.23□□□□□ -0.77
HMGA1P4-201ENST00000428643 SLC39A6Q13433 755 aa10.23□□□□□ -0.77
HMGA1P4-201ENST00000428643 FAM196AQ6ZSG2 479 aa10.23□□□□□ -0.77
HMGA1P4-201ENST00000428643 TRMT2AQ8IZ69 625 aaKnown RBP10.23□□□□□ -0.77
HMGA1P4-201ENST00000428643 KCNQ2O43526 872 aa10.22□□□□□ -0.77
HMGA1P4-201ENST00000428643 ZNF790Q6PG37 636 aa10.22□□□□□ -0.77
HMGA1P4-201ENST00000428643 ELL2O00472 640 aaPredicted RBP10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 PTCD1O75127 700 aaKnown RBP10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 EIF4A1P60842 406 aaKnown RBP10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 KRT24Q2M2I5 525 aa10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 PIAS4Q8N2W9 510 aaPredicted RBP10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 C8orf58Q8NAV2 365 aa10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 FMNL2Q96PY5 1086 aa10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 ATG3Q9NT62 314 aa10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 ASAP1Q9ULH1 1129 aa10.21□□□□□ -0.77
HMGA1P4-201ENST00000428643 NHSQ6T4R5 1651 aa10.21□□□□□ -0.78
HMGA1P4-201ENST00000428643 SIPA1L3O60292 1781 aaPredicted RBP10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 TRIM37O94972 964 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 TWISTNBQ3B726 338 aaPredicted RBP10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 KCPQ6ZWJ8 1503 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 KDM3BQ7LBC6 1761 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 PTF1AQ7RTS3 328 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 TSPYL6Q8N831 410 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 PALLDQ8WX93 1383 aa10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 ZNF496Q96IT1 587 aaPredicted RBP10.2□□□□□ -0.78
HMGA1P4-201ENST00000428643 PAPPAQ13219 1627 aa10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 CT47B1P0C2W7 299 aaPredicted RBP10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 SMARCC1Q92922 1105 aaPredicted RBP10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 RBM42Q9BTD8 480 aaKnown RBP10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 BCL11BQ9C0K0 894 aaPredicted RBP10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 RCAN3Q9UKA8 241 aa10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 BRWD3Q6RI45 1802 aa10.19□□□□□ -0.78
HMGA1P4-201ENST00000428643 HEG1Q9ULI3 1381 aa10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 SOS1Q07889 1333 aaPredicted RBP10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 SNRPA1P09661 255 aaKnown RBP10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 HDGFL1Q5TGJ6 251 aa10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 NECTIN2Q92692 538 aa10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 SMC4Q9NTJ3 1288 aa10.18□□□□□ -0.78
HMGA1P4-201ENST00000428643 TCERG1O14776 1098 aaKnown RBP10.17□□□□□ -0.78
HMGA1P4-201ENST00000428643 GIGYF1O75420 1035 aaPredicted RBP10.17□□□□□ -0.78
HMGA1P4-201ENST00000428643 HOXB7P09629 217 aa10.17□□□□□ -0.78
HMGA1P4-201ENST00000428643 BCL2L13Q9BXK5 485 aa10.17□□□□□ -0.78
HMGA1P4-201ENST00000428643 LOC102724428A0A0B4J2F2 783 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 PRAMEF22A3QJZ6 481 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 VAMP4O75379 141 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 EIF2S2P20042 333 aaKnown RBP10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 RARSP54136 660 aaKnown RBP10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 SIK1P57059 783 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 UPF1Q92900 1129 aaKnown RBP eCLIP10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 ZNF428Q96B54 188 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 STK31Q9BXU1 1019 aa10.16□□□□□ -0.78
HMGA1P4-201ENST00000428643 ITGB4P16144 1822 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 VIRMAQ69YN4 1812 aaKnown RBP10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 CANXP27824 592 aaKnown RBP10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 CCDC30Q5VVM6 783 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 DNAJC10Q8IXB1 793 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 SSH1Q8WYL5 1049 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 CHMP4AQ9BY43 222 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 UBR2Q8IWV8 1755 aa10.15□□□□□ -0.78
HMGA1P4-201ENST00000428643 STARD3NLO95772 234 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 APBA3O96018 575 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 ATP6V1AP38606 617 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 ALDH1L2Q3SY69 923 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 VSIG10Q8N0Z9 540 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 TEX13AQ9BXU3 409 aaPredicted RBP10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 CHPF2Q9P2E5 772 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 CCNL1Q9UK58 526 aaPredicted RBP10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 BTAF1O14981 1849 aa10.14□□□□□ -0.79
HMGA1P4-201ENST00000428643 KIF16BQ96L93 1317 aa10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 C5P01031 1676 aa10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 BCAR3O75815 825 aa10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 SF3B2Q13435 895 aaKnown RBP10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 FRAT1Q92837 279 aaPredicted RBP10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 SLC4A9Q96Q91 983 aa10.13□□□□□ -0.79
HMGA1P4-201ENST00000428643 SUPT16HQ9Y5B9 1047 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms