RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PDE1AP54750 535 aa13.43□□□□□ -0.26
LIMS1-207ENST00000422797 EIF4A2Q14240 407 aaKnown RBP13.43□□□□□ -0.26
LIMS1-207ENST00000422797 N4BP2Q86UW6 1770 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-207ENST00000422797 KIAA1211Q6ZU35 1233 aa13.42□□□□□ -0.26
LIMS1-207ENST00000422797 BABAM1Q9NWV8 329 aa13.42□□□□□ -0.26
LIMS1-207ENST00000422797 TTC21AQ8NDW8 1320 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 BRD1O95696 1058 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 FAM184AQ8NB25 1140 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 CHMP4AQ9BY43 222 aa13.41□□□□□ -0.26
LIMS1-207ENST00000422797 FAM83GA6ND36 823 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 PRPF40AO75400 957 aaKnown RBP13.4□□□□□ -0.26
LIMS1-207ENST00000422797 RRS1Q15050 365 aaKnown RBP13.4□□□□□ -0.26
LIMS1-207ENST00000422797 RTF1Q92541 710 aaKnown RBP13.4□□□□□ -0.26
LIMS1-207ENST00000422797 MEIS3Q99687 375 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 ESYT1Q9BSJ8 1104 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 STK31Q9BXU1 1019 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 LRRCC1Q9C099 1032 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 STAP2Q9UGK3 403 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 ZKSCAN5Q9Y2L8 839 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 METP08581 1390 aa13.4□□□□□ -0.26
LIMS1-207ENST00000422797 LRRC37A3O60309 1634 aa13.4□□□□□ -0.27
LIMS1-207ENST00000422797 SALL3Q9BXA9 1300 aa13.4□□□□□ -0.27
LIMS1-207ENST00000422797 C16orf71Q8IYS4 520 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-207ENST00000422797 RBSNQ9H1K0 784 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 USP6P35125 1406 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 KDRP35968 1356 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 LETM1O95202 739 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-207ENST00000422797 SLC4A2P04920 1241 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 UVSSAQ2YD98 709 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 GPT2Q8TD30 523 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 TMX3Q96JJ7 454 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 ZDHHC9Q9Y397 364 aa13.39□□□□□ -0.27
LIMS1-207ENST00000422797 TUBGCP6Q96RT7 1819 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 SBNO1A3KN83 1393 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 WDR33Q9C0J8 1336 aaKnown RBP13.38□□□□□ -0.27
LIMS1-207ENST00000422797 MX1P20591 662 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 FBLN1P23142 703 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 DSG3P32926 999 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 PRIM1P49642 420 aaKnown RBP13.38□□□□□ -0.27
LIMS1-207ENST00000422797 NEK4P51957 841 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 DCTN1Q14203 1278 aa13.38□□□□□ -0.27
LIMS1-207ENST00000422797 OTUD7AQ8TE49 926 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-207ENST00000422797 FLT4P35916 1363 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 FMN2Q9NZ56 1722 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 CCDC30Q5VVM6 783 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 ZGPATQ8N5A5 531 aaKnown RBP13.37□□□□□ -0.27
LIMS1-207ENST00000422797 TSPY26PQ9H489 355 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 TSPYL4Q9UJ04 414 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 PTPRUQ92729 1446 aa13.37□□□□□ -0.27
LIMS1-207ENST00000422797 FAM208AQ9UK61 1670 aaKnown RBP13.36□□□□□ -0.27
LIMS1-207ENST00000422797 SMARCA5O60264 1052 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-207ENST00000422797 RAB11FIP3O75154 756 aa13.36□□□□□ -0.27
LIMS1-207ENST00000422797 PDIA4P13667 645 aaKnown RBP13.36□□□□□ -0.27
LIMS1-207ENST00000422797 ATP8B2P98198 1209 aa13.36□□□□□ -0.27
LIMS1-207ENST00000422797 TMEM87AQ8NBN3 555 aa13.36□□□□□ -0.27
LIMS1-207ENST00000422797 FBXO41Q8TF61 875 aa13.36□□□□□ -0.27
LIMS1-207ENST00000422797 ZRANB1Q9UGI0 708 aa13.36□□□□□ -0.27
LIMS1-207ENST00000422797 PEAK1Q9H792 1746 aa13.35□□□□□ -0.27
LIMS1-207ENST00000422797 CACNA1FO60840 1977 aa13.35□□□□□ -0.27
LIMS1-207ENST00000422797 TXNDC2Q86VQ3 553 aa13.35□□□□□ -0.27
LIMS1-207ENST00000422797 AEBP1Q8IUX7 1158 aa13.35□□□□□ -0.27
LIMS1-207ENST00000422797 PRR36Q9H6K5 1346 aa13.35□□□□□ -0.27
LIMS1-207ENST00000422797 DYNC1I1O14576 645 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 CHMLP26374 656 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 MCM10Q7L590 875 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 TMEM63CQ9P1W3 806 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 ATP6V1DQ9Y5K8 247 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 XRN1Q8IZH2 1706 aaKnown RBP13.34□□□□□ -0.27
LIMS1-207ENST00000422797 PLEKHG5O94827 1062 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 PKP1Q13835 747 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 SASS6Q6UVJ0 657 aa13.34□□□□□ -0.27
LIMS1-207ENST00000422797 SYCE3A1L190 88 aa13.33□□□□□ -0.28
LIMS1-207ENST00000422797 TNRQ92752 1358 aa13.33□□□□□ -0.28
LIMS1-207ENST00000422797 TMEM2Q9UHN6 1383 aa13.33□□□□□ -0.28
LIMS1-207ENST00000422797 PLEKHG1Q9ULL1 1385 aa13.33□□□□□ -0.28
LIMS1-207ENST00000422797 RIMS1Q86UR5 1692 aaKnown RBP13.33□□□□□ -0.28
LIMS1-207ENST00000422797 ACEP12821 1306 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 IGSF1Q8N6C5 1336 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 KIAA2012Q0VF49 1180 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 FLIIQ13045 1269 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 HSP90AB4PQ58FF6 505 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 SLC4A10Q6U841 1118 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 ESF1Q9H501 851 aaKnown RBP13.32□□□□□ -0.28
LIMS1-207ENST00000422797 ANO2Q9NQ90 1003 aa13.32□□□□□ -0.28
LIMS1-207ENST00000422797 ROBO2Q9HCK4 1378 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 APBB1O00213 710 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 HSPA4P34932 840 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 KRT24Q2M2I5 525 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 CCDC183Q5T5S1 534 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 RBM27Q9P2N5 1060 aaKnown RBP13.31□□□□□ -0.28
LIMS1-207ENST00000422797 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-207ENST00000422797 USP54Q70EL1 1684 aa13.31□□□□□ -0.28
LIMS1-207ENST00000422797 PTMAP06454 111 aaKnown RBP13.3□□□□□ -0.28
LIMS1-207ENST00000422797 TPM3P06753 285 aa13.3□□□□□ -0.28
LIMS1-207ENST00000422797 ADAMTS13Q76LX8 1427 aa13.3□□□□□ -0.28
LIMS1-207ENST00000422797 MAP3K19Q56UN5 1328 aa13.3□□□□□ -0.28
LIMS1-207ENST00000422797 UBR1Q8IWV7 1749 aa13.3□□□□□ -0.28
LIMS1-207ENST00000422797 AK9Q5TCS8 1911 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms