RNA–Protein interactions for RNA: ENST00000422344.5

TRAF4-204, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-204ENST00000422344 HMOX1P09601 288 aa29.5■■■□□ 2.31
TRAF4-204ENST00000422344 DCAF5Q96JK2 942 aa29.5■■■□□ 2.31
TRAF4-204ENST00000422344 CFAP53Q96M91 514 aa29.5■■■□□ 2.31
TRAF4-204ENST00000422344 C5P01031 1676 aa29.49■■■□□ 2.31
TRAF4-204ENST00000422344 U2SURPO15042 1029 aaKnown RBP29.47■■■□□ 2.31
TRAF4-204ENST00000422344 YBX3P16989 372 aaKnown RBP eCLIP29.47■■■□□ 2.311e-7■■□□□ 13.9
TRAF4-204ENST00000422344 ERVV-2B6SEH9 535 aa29.46■■■□□ 2.31
TRAF4-204ENST00000422344 COL3A1P02461 1466 aaPredicted RBP29.46■■■□□ 2.31
TRAF4-204ENST00000422344 GIGYF1O75420 1035 aaPredicted RBP29.45■■■□□ 2.31
TRAF4-204ENST00000422344 TAF1LQ8IZX4 1826 aa29.44■■■□□ 2.3
TRAF4-204ENST00000422344 GRIN3BO60391 1043 aa29.44■■■□□ 2.3
TRAF4-204ENST00000422344 CABP4P57796 275 aa29.43■■■□□ 2.3
TRAF4-204ENST00000422344 FLAD1Q8NFF5 587 aa29.43■■■□□ 2.3
TRAF4-204ENST00000422344 PPP2R1AP30153 589 aa29.42■■■□□ 2.3
TRAF4-204ENST00000422344 KDM6AO15550 1401 aaPredicted RBP29.42■■■□□ 2.3
TRAF4-204ENST00000422344 ASAP1Q9ULH1 1129 aa29.41■■■□□ 2.3
TRAF4-204ENST00000422344 AKAP4Q5JQC9 854 aa29.4■■■□□ 2.3
TRAF4-204ENST00000422344 LOC102724428A0A0B4J2F2 783 aa29.39■■■□□ 2.3
TRAF4-204ENST00000422344 SIK1P57059 783 aa29.39■■■□□ 2.3
TRAF4-204ENST00000422344 ATG3Q9NT62 314 aa29.39■■■□□ 2.3
TRAF4-204ENST00000422344 NUDCQ9Y266 331 aa29.39■■■□□ 2.3
TRAF4-204ENST00000422344 AK7Q96M32 723 aa29.38■■■□□ 2.29
TRAF4-204ENST00000422344 C4BP0C0L5 1744 aa29.37■■■□□ 2.29
TRAF4-204ENST00000422344 CD2APQ9Y5K6 639 aa29.37■■■□□ 2.29
TRAF4-204ENST00000422344 AMIGO3Q86WK7 504 aa29.35■■■□□ 2.29
TRAF4-204ENST00000422344 PHF14O94880 888 aa29.34■■■□□ 2.29
TRAF4-204ENST00000422344 ATP6V1AP38606 617 aa29.34■■■□□ 2.29
TRAF4-204ENST00000422344 MTHFSDQ2M296 383 aaKnown RBP29.34■■■□□ 2.29
TRAF4-204ENST00000422344 SMIM5Q71RC9 77 aa29.34■■■□□ 2.29
TRAF4-204ENST00000422344 ZEB1P37275 1124 aaPredicted RBP29.33■■■□□ 2.29
TRAF4-204ENST00000422344 NFATC2IPQ8NCF5 419 aa29.32■■■□□ 2.28
TRAF4-204ENST00000422344 RBM42Q9BTD8 480 aaKnown RBP29.32■■■□□ 2.28
TRAF4-204ENST00000422344 SCN11AQ9UI33 1791 aa29.31■■■□□ 2.28
TRAF4-204ENST00000422344 UBR3Q6ZT12 1888 aa29.31■■■□□ 2.28
TRAF4-204ENST00000422344 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.3■■■□□ 2.28
TRAF4-204ENST00000422344 U2AF1L5P0DN76 240 aaPredicted RBP29.3■■■□□ 2.28
TRAF4-204ENST00000422344 U2AF1Q01081 240 aaKnown RBP eCLIP29.3■■■□□ 2.283e-7■■□□□ 12.8
TRAF4-204ENST00000422344 DDX10Q13206 875 aaKnown RBP29.3■■■□□ 2.28
TRAF4-204ENST00000422344 LINC00116Q8NCU8 138 aa29.29■■■□□ 2.28
TRAF4-204ENST00000422344 GAS2L2Q8NHY3 880 aa29.29■■■□□ 2.28
TRAF4-204ENST00000422344 RNMTO43148 476 aaKnown RBP29.28■■■□□ 2.28
TRAF4-204ENST00000422344 ITPK1Q13572 414 aa29.28■■■□□ 2.28
TRAF4-204ENST00000422344 ATP10DQ9P241 1426 aa29.28■■■□□ 2.28
TRAF4-204ENST00000422344 PRKAR2BP31323 418 aa29.27■■■□□ 2.28
TRAF4-204ENST00000422344 SLC52A2Q9HAB3 445 aa29.27■■■□□ 2.28
TRAF4-204ENST00000422344 LGR6Q9HBX8 967 aa29.27■■■□□ 2.28
TRAF4-204ENST00000422344 CEP350Q5VT06 3117 aa29.26■■■□□ 2.27
TRAF4-204ENST00000422344 SSFA2P28290 1259 aa29.25■■■□□ 2.27
TRAF4-204ENST00000422344 RSPH6AQ9H0K4 717 aa29.25■■■□□ 2.27
TRAF4-204ENST00000422344 WWC3Q9ULE0 1092 aa29.25■■■□□ 2.27
TRAF4-204ENST00000422344 PTCD1O75127 700 aaKnown RBP29.24■■■□□ 2.27
TRAF4-204ENST00000422344 ZNF831Q5JPB2 1677 aa29.24■■■□□ 2.27
TRAF4-204ENST00000422344 MRC1P22897 1456 aa29.23■■■□□ 2.27
TRAF4-204ENST00000422344 GNAT3A8MTJ3 354 aa29.23■■■□□ 2.27
TRAF4-204ENST00000422344 GNPATO15228 680 aa29.23■■■□□ 2.27
TRAF4-204ENST00000422344 RALBP1Q15311 655 aa29.22■■■□□ 2.27
TRAF4-204ENST00000422344 SLC4A9Q96Q91 983 aa29.21■■■□□ 2.27
TRAF4-204ENST00000422344 VIRMAQ69YN4 1812 aaKnown RBP29.21■■■□□ 2.27
TRAF4-204ENST00000422344 FCHSD2O94868 740 aa29.2■■■□□ 2.26
TRAF4-204ENST00000422344 GPBP1L1Q9HC44 474 aaPredicted RBP29.2■■■□□ 2.26
TRAF4-204ENST00000422344 ADAMTS7Q9UKP4 1686 aa29.2■■■□□ 2.26
TRAF4-204ENST00000422344 ZNF526Q8TF50 670 aaPredicted RBP29.19■■■□□ 2.26
TRAF4-204ENST00000422344 PHACTR3Q96KR7 559 aa29.19■■■□□ 2.26
TRAF4-204ENST00000422344 TEFQ10587 303 aa29.17■■■□□ 2.26
TRAF4-204ENST00000422344 RTCBQ9Y3I0 505 aaKnown RBP29.17■■■□□ 2.26
TRAF4-204ENST00000422344 ADCY9O60503 1353 aa29.16■■■□□ 2.26
TRAF4-204ENST00000422344 NEFMP07197 916 aa29.16■■■□□ 2.26
TRAF4-204ENST00000422344 RC3H1Q5TC82 1133 aaKnown RBP29.16■■■□□ 2.26
TRAF4-204ENST00000422344 COL5A3P25940 1745 aaPredicted RBP29.16■■■□□ 2.26
TRAF4-204ENST00000422344 CNTNAP4Q9C0A0 1308 aa29.16■■■□□ 2.26
TRAF4-204ENST00000422344 SLC39A6Q13433 755 aa29.14■■■□□ 2.26
TRAF4-204ENST00000422344 TTC5Q8N0Z6 440 aa29.13■■■□□ 2.25
TRAF4-204ENST00000422344 IL17REQ8NFR9 667 aa29.13■■■□□ 2.25
TRAF4-204ENST00000422344 MMP10P09238 476 aa29.12■■■□□ 2.25
TRAF4-204ENST00000422344 TRAPPC3LQ5T215 181 aa29.12■■■□□ 2.25
TRAF4-204ENST00000422344 RTF1Q92541 710 aaKnown RBP29.12■■■□□ 2.25
TRAF4-204ENST00000422344 TJP1Q07157 1748 aa29.11■■■□□ 2.25
TRAF4-204ENST00000422344 CICQ96RK0 1608 aaPredicted RBP29.1■■■□□ 2.25
TRAF4-204ENST00000422344 ADRA2BP18089 450 aa29.1■■■□□ 2.25
TRAF4-204ENST00000422344 MYBBP1AQ9BQG0 1328 aaKnown RBP29.1■■■□□ 2.25
TRAF4-204ENST00000422344 RPS6KA4O75676 772 aa29.09■■■□□ 2.25
TRAF4-204ENST00000422344 CRKLP46109 303 aaKnown RBP29.09■■■□□ 2.25
TRAF4-204ENST00000422344 DNAJC10Q8IXB1 793 aa29.08■■■□□ 2.25
TRAF4-204ENST00000422344 PNNQ9H307 717 aaKnown RBP29.08■■■□□ 2.25
TRAF4-204ENST00000422344 KCPQ6ZWJ8 1503 aa29.08■■■□□ 2.25
TRAF4-204ENST00000422344 CEMIPQ8WUJ3 1361 aa29.07■■■□□ 2.24
TRAF4-204ENST00000422344 RFC4P35249 363 aa29.06■■■□□ 2.24
TRAF4-204ENST00000422344 VSIG10Q8N0Z9 540 aa29.05■■■□□ 2.24
TRAF4-204ENST00000422344 ARHGEF1Q92888 912 aaKnown RBP29.05■■■□□ 2.24
TRAF4-204ENST00000422344 SIPA1L3O60292 1781 aaPredicted RBP29.04■■■□□ 2.24
TRAF4-204ENST00000422344 MAPK8IP3Q9UPT6 1336 aa29.04■■■□□ 2.24
TRAF4-204ENST00000422344 ZNF790Q6PG37 636 aa29.04■■■□□ 2.24
TRAF4-204ENST00000422344 NLGN1Q8N2Q7 840 aa29.04■■■□□ 2.24
TRAF4-204ENST00000422344 PXDNLA1KZ92 1463 aa29.04■■■□□ 2.24
TRAF4-204ENST00000422344 KIF13BQ9NQT8 1826 aa29.04■■■□□ 2.24
TRAF4-204ENST00000422344 UBR2Q8IWV8 1755 aa29.03■■■□□ 2.24
TRAF4-204ENST00000422344 HTATSF1O43719 755 aaKnown RBP29.03■■■□□ 2.24
TRAF4-204ENST00000422344 HSPA6P17066 643 aa29.03■■■□□ 2.24
TRAF4-204ENST00000422344 MCM10Q7L590 875 aa29.03■■■□□ 2.24
TRAF4-204ENST00000422344 CCDC87Q9NVE4 849 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms