RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 RNMTO43148 476 aaKnown RBP16.57■□□□□ 0.24
SKA1-203ENST00000417656 C5P01031 1676 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 GNAT3A8MTJ3 354 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 NEFMP07197 916 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 CABP4P57796 275 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 CCDC146Q8IYE0 955 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 PROM2Q8N271 834 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 LGR6Q9HBX8 967 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 MRS2Q9HD23 443 aa16.56■□□□□ 0.24
SKA1-203ENST00000417656 TAF1LQ8IZX4 1826 aa16.55■□□□□ 0.24
SKA1-203ENST00000417656 ADAMTS8Q9UP79 889 aa16.55■□□□□ 0.24
SKA1-203ENST00000417656 PNNQ9H307 717 aaKnown RBP16.54■□□□□ 0.24
SKA1-203ENST00000417656 SLC52A2Q9HAB3 445 aa16.54■□□□□ 0.24
SKA1-203ENST00000417656 CEMIPQ8WUJ3 1361 aa16.53■□□□□ 0.24
SKA1-203ENST00000417656 KCNQ4P56696 695 aa16.53■□□□□ 0.24
SKA1-203ENST00000417656 NFE2L2Q16236 605 aa16.53■□□□□ 0.24
SKA1-203ENST00000417656 ANO8Q9HCE9 1232 aaPredicted RBP16.53■□□□□ 0.24
SKA1-203ENST00000417656 ASAP1Q9ULH1 1129 aa16.53■□□□□ 0.24
SKA1-203ENST00000417656 UBR2Q8IWV8 1755 aa16.53■□□□□ 0.24
SKA1-203ENST00000417656 TUBGCP6Q96RT7 1819 aa16.52■□□□□ 0.24
SKA1-203ENST00000417656 NFATC2IPQ8NCF5 419 aa16.52■□□□□ 0.24
SKA1-203ENST00000417656 IL17REQ8NFR9 667 aa16.52■□□□□ 0.24
SKA1-203ENST00000417656 SMARCC1Q92922 1105 aaPredicted RBP16.52■□□□□ 0.24
SKA1-203ENST00000417656 ATG3Q9NT62 314 aa16.52■□□□□ 0.24
SKA1-203ENST00000417656 LRRC4BQ9NT99 713 aa16.52■□□□□ 0.24
SKA1-203ENST00000417656 CCNL1Q9UK58 526 aaPredicted RBP16.52■□□□□ 0.24
SKA1-203ENST00000417656 ZNF831Q5JPB2 1677 aa16.52■□□□□ 0.23
SKA1-203ENST00000417656 TJP1Q07157 1748 aa16.51■□□□□ 0.23
SKA1-203ENST00000417656 SLC27A3Q5K4L6 730 aa16.51■□□□□ 0.23
SKA1-203ENST00000417656 MCM10Q7L590 875 aa16.51■□□□□ 0.23
SKA1-203ENST00000417656 CICQ96RK0 1608 aaPredicted RBP16.51■□□□□ 0.23
SKA1-203ENST00000417656 C4BP0C0L5 1744 aa16.5■□□□□ 0.23
SKA1-203ENST00000417656 COL5A3P25940 1745 aaPredicted RBP16.5■□□□□ 0.23
SKA1-203ENST00000417656 KCPQ6ZWJ8 1503 aa16.5■□□□□ 0.23
SKA1-203ENST00000417656 PSDA5PKW4 1024 aaPredicted RBP16.5■□□□□ 0.23
SKA1-203ENST00000417656 DCTN1Q14203 1278 aa16.5■□□□□ 0.23
SKA1-203ENST00000417656 RTF1Q92541 710 aaKnown RBP16.5■□□□□ 0.23
SKA1-203ENST00000417656 RUNDC1Q96C34 613 aa16.5■□□□□ 0.23
SKA1-203ENST00000417656 TEFQ10587 303 aa16.49■□□□□ 0.23
SKA1-203ENST00000417656 R3HDM1Q15032 1099 aaKnown RBP16.49■□□□□ 0.23
SKA1-203ENST00000417656 RRP7AQ9Y3A4 280 aaKnown RBP16.49■□□□□ 0.23
SKA1-203ENST00000417656 QSER1Q2KHR3 1735 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 LOC102724428A0A0B4J2F2 783 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 SIK1P57059 783 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 ZNF827Q17R98 1081 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 NBPF14Q5TI25 921 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
SKA1-203ENST00000417656 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
SKA1-203ENST00000417656 KDM3BQ7LBC6 1761 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 CASZ1Q86V15 1759 aa16.48■□□□□ 0.23
SKA1-203ENST00000417656 HTATSF1O43719 755 aaKnown RBP16.47■□□□□ 0.23
SKA1-203ENST00000417656 TMPOP42166 694 aaKnown RBP16.47■□□□□ 0.23
SKA1-203ENST00000417656 SLC39A6Q13433 755 aa16.47■□□□□ 0.23
SKA1-203ENST00000417656 THUMPD2Q9BTF0 503 aaKnown RBP16.47■□□□□ 0.23
SKA1-203ENST00000417656 STK32BQ9NY57 414 aa16.47■□□□□ 0.23
SKA1-203ENST00000417656 RIPK4P57078 832 aa16.46■□□□□ 0.23
SKA1-203ENST00000417656 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
SKA1-203ENST00000417656 PTCD1O75127 700 aaKnown RBP16.45■□□□□ 0.22
SKA1-203ENST00000417656 ITPK1Q13572 414 aa16.45■□□□□ 0.22
SKA1-203ENST00000417656 NEUROD2Q15784 382 aa16.45■□□□□ 0.22
SKA1-203ENST00000417656 SLC4A9Q96Q91 983 aa16.45■□□□□ 0.22
SKA1-203ENST00000417656 UBR3Q6ZT12 1888 aa16.44■□□□□ 0.22
SKA1-203ENST00000417656 ATP6V1AP38606 617 aa16.44■□□□□ 0.22
SKA1-203ENST00000417656 SLC15A2Q16348 729 aa16.44■□□□□ 0.22
SKA1-203ENST00000417656 LINC00116Q8NCU8 138 aa16.44■□□□□ 0.22
SKA1-203ENST00000417656 AKT1S1Q96B36 256 aa16.44■□□□□ 0.22
SKA1-203ENST00000417656 APAF1O14727 1248 aa16.43■□□□□ 0.22
SKA1-203ENST00000417656 LMOD3Q0VAK6 560 aa16.43■□□□□ 0.22
SKA1-203ENST00000417656 BTBD11A6QL63 1104 aa16.42■□□□□ 0.22
SKA1-203ENST00000417656 KCNA4P22459 653 aa16.42■□□□□ 0.22
SKA1-203ENST00000417656 FAM9BQ8IZU0 186 aa16.42■□□□□ 0.22
SKA1-203ENST00000417656 TTC5Q8N0Z6 440 aa16.42■□□□□ 0.22
SKA1-203ENST00000417656 SENP3-EIF4A1A0A087X0R7 540 aa16.41■□□□□ 0.22
SKA1-203ENST00000417656 KCNQ3O43525 872 aa16.41■□□□□ 0.22
SKA1-203ENST00000417656 ZNF790Q6PG37 636 aa16.41■□□□□ 0.22
SKA1-203ENST00000417656 TRIM35Q9UPQ4 493 aa16.41■□□□□ 0.22
SKA1-203ENST00000417656 LAMB4A4D0S4 1761 aa16.41■□□□□ 0.22
SKA1-203ENST00000417656 CCER2I3L3R5 266 aa16.4■□□□□ 0.22
SKA1-203ENST00000417656 MYH14Q7Z406 1995 aaKnown RBP16.4■□□□□ 0.22
SKA1-203ENST00000417656 HEG1Q9ULI3 1381 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 LRP5O75197 1615 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 DNAJC10Q8IXB1 793 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 ZNF496Q96IT1 587 aaPredicted RBP16.39■□□□□ 0.21
SKA1-203ENST00000417656 AK7Q96M32 723 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 PDGFDQ9GZP0 370 aaPredicted RBP16.39■□□□□ 0.21
SKA1-203ENST00000417656 SPINK5Q9NQ38 1064 aaPredicted RBP16.39■□□□□ 0.21
SKA1-203ENST00000417656 TFCP2L1Q9NZI6 479 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 PNPLA7Q6ZV29 1317 aa16.39■□□□□ 0.21
SKA1-203ENST00000417656 TAF7Q15545 349 aaPredicted RBP16.38■□□□□ 0.21
SKA1-203ENST00000417656 AMIGO3Q86WK7 504 aa16.38■□□□□ 0.21
SKA1-203ENST00000417656 MIER1Q8N108 512 aa16.38■□□□□ 0.21
SKA1-203ENST00000417656 MIS18AQ9NYP9 233 aa16.38■□□□□ 0.21
SKA1-203ENST00000417656 C4AP0C0L4 1744 aa16.38■□□□□ 0.21
SKA1-203ENST00000417656 CNTNAP4Q9C0A0 1308 aa16.38■□□□□ 0.21
SKA1-203ENST00000417656 FMNL2Q96PY5 1086 aa16.37■□□□□ 0.21
SKA1-203ENST00000417656 GNPATO15228 680 aa16.36■□□□□ 0.21
SKA1-203ENST00000417656 HMGB2P26583 209 aaKnown RBP16.36■□□□□ 0.21
SKA1-203ENST00000417656 DSG3P32926 999 aa16.36■□□□□ 0.21
SKA1-203ENST00000417656 CAPN15O75808 1086 aa16.35■□□□□ 0.21
SKA1-203ENST00000417656 PHF14O94880 888 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms