RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	TAF1L	Q8IZX4	1826 aa		11.25	□□□□□ -0.61
CCT3-208	ENST00000415548	PNPLA7	Q6ZV29	1317 aa		11.25	□□□□□ -0.61
CCT3-208	ENST00000415548	SCN11A	Q9UI33	1791 aa		11.25	□□□□□ -0.61
CCT3-208	ENST00000415548	QSER1	Q2KHR3	1735 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	LOC102724428	A0A0B4J2F2	783 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	SIK1	P57059	783 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	NFATC2IP	Q8NCF5	419 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	LGR6	Q9HBX8	967 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	NUDC	Q9Y266	331 aa		11.24	□□□□□ -0.61
CCT3-208	ENST00000415548	NPM3	O75607	178 aa	Known RBP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	PRKAR2B	P31323	418 aa		11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	PTGER2	P43116	358 aa		11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	C1QBP	Q07021	282 aa	Known RBP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	MTFR1L	Q9H019	292 aa		11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	RSPH6A	Q9H0K4	717 aa		11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	VIRMA	Q69YN4	1812 aa	Known RBP	11.23	□□□□□ -0.61
CCT3-208	ENST00000415548	RNMT	O43148	476 aa	Known RBP	11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	C4B	P0C0L5	1744 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	ATP6V1A	P38606	617 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	ITPK1	Q13572	414 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	RALBP1	Q15311	655 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	LINC00116	Q8NCU8	138 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	PHACTR3	Q96KR7	559 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	SLC4A9	Q96Q91	983 aa		11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	RBM42	Q9BTD8	480 aa	Known RBP	11.22	□□□□□ -0.61
CCT3-208	ENST00000415548	COL23A1	Q86Y22	540 aa	Predicted RBP	11.21	□□□□□ -0.61
CCT3-208	ENST00000415548	GAS2L2	Q8NHY3	880 aa		11.21	□□□□□ -0.61
CCT3-208	ENST00000415548	AK7	Q96M32	723 aa		11.21	□□□□□ -0.61
CCT3-208	ENST00000415548	SGIP1	Q9BQI5	828 aa		11.21	□□□□□ -0.61
CCT3-208	ENST00000415548	SLC52A2	Q9HAB3	445 aa		11.21	□□□□□ -0.61
CCT3-208	ENST00000415548	ADAMTS7	Q9UKP4	1686 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	MRC1	P22897	1456 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	MAP3K5	Q99683	1374 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	GNAT3	A8MTJ3	354 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	PTCD1	O75127	700 aa	Known RBP	11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	FCHSD2	O94868	740 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	HMGB2	P26583	209 aa	Known RBP	11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	SMIM5	Q71RC9	77 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	AMIGO3	Q86WK7	504 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	SLC16A10	Q8TF71	515 aa		11.2	□□□□□ -0.62
CCT3-208	ENST00000415548	UBR3	Q6ZT12	1888 aa		11.19	□□□□□ -0.62
CCT3-208	ENST00000415548	IL17RE	Q8NFR9	667 aa		11.19	□□□□□ -0.62
CCT3-208	ENST00000415548	ZNF831	Q5JPB2	1677 aa		11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	GNPAT	O15228	680 aa		11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	PHF14	O94880	888 aa		11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	SLC39A6	Q13433	755 aa		11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	FLAD1	Q8NFF5	587 aa		11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	COL5A3	P25940	1745 aa	Predicted RBP	11.18	□□□□□ -0.62
CCT3-208	ENST00000415548	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.17	□□□□□ -0.62
CCT3-208	ENST00000415548	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.17	□□□□□ -0.62
CCT3-208	ENST00000415548	MSL1	Q68DK7	614 aa		11.17	□□□□□ -0.62
CCT3-208	ENST00000415548	ARX	Q96QS3	562 aa		11.17	□□□□□ -0.62
CCT3-208	ENST00000415548	COL24A1	Q17RW2	1714 aa		11.17	□□□□□ -0.62
CCT3-208	ENST00000415548	TJP1	Q07157	1748 aa		11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	SSFA2	P28290	1259 aa		11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	POLD1	P28340	1107 aa		11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	TEF	Q10587	303 aa		11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	MYH14	Q7Z406	1995 aa	Known RBP	11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	SIPA1L3	O60292	1781 aa	Predicted RBP	11.16	□□□□□ -0.62
CCT3-208	ENST00000415548	KCP	Q6ZWJ8	1503 aa		11.15	□□□□□ -0.62
CCT3-208	ENST00000415548	CNTNAP4	Q9C0A0	1308 aa		11.15	□□□□□ -0.62
CCT3-208	ENST00000415548	RC3H1	Q5TC82	1133 aa	Known RBP	11.15	□□□□□ -0.62
CCT3-208	ENST00000415548	DNAJC10	Q8IXB1	793 aa		11.15	□□□□□ -0.62
CCT3-208	ENST00000415548	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.15	□□□□□ -0.62
CCT3-208	ENST00000415548	CEMIP	Q8WUJ3	1361 aa		11.15	□□□□□ -0.63
CCT3-208	ENST00000415548	CIC	Q96RK0	1608 aa	Predicted RBP	11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	MCM10	Q7L590	875 aa		11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	RTF1	Q92541	710 aa	Known RBP	11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	PLEKHF1	Q96S99	279 aa		11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	RTCB	Q9Y3I0	505 aa	Known RBP	11.14	□□□□□ -0.63
CCT3-208	ENST00000415548	UBR2	Q8IWV8	1755 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	RPS6KA4	O75676	772 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	NEFM	P07197	916 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	CRKL	P46109	303 aa	Known RBP	11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	DCTN1	Q14203	1278 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	TTC5	Q8N0Z6	440 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	KLHL34	Q8N239	644 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	SYT17	Q9BSW7	474 aa		11.13	□□□□□ -0.63
CCT3-208	ENST00000415548	DLG5	Q8TDM6	1919 aa		11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	KCNQ3	O43525	872 aa		11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	HTATSF1	O43719	755 aa	Known RBP	11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	TRAPPC3L	Q5T215	181 aa		11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	INTS5	Q6P9B9	1019 aa	Known RBP	11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	ZNF790	Q6PG37	636 aa		11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	ARHGEF1	Q92888	912 aa	Known RBP	11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	ZNF496	Q96IT1	587 aa	Predicted RBP	11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	PNN	Q9H307	717 aa	Known RBP	11.12	□□□□□ -0.63
CCT3-208	ENST00000415548	MAPK8IP3	Q9UPT6	1336 aa		11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	BTBD11	A6QL63	1104 aa		11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	CYP19A1	P11511	503 aa	Predicted RBP	11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	NFE2L2	Q16236	605 aa		11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	VSIG10	Q8N0Z9	540 aa		11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	CCDC87	Q9NVE4	849 aa		11.11	□□□□□ -0.63
CCT3-208	ENST00000415548	RFC4	P35249	363 aa		11.1	□□□□□ -0.63
CCT3-208	ENST00000415548	HEG1	Q9ULI3	1381 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms