RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NFATC2IPQ8NCF5 419 aa18.49■□□□□ 0.55
SF3B1-204ENST00000414963 TSPYL4Q9UJ04 414 aa18.49■□□□□ 0.55
SF3B1-204ENST00000414963 BCL9O00512 1426 aa18.49■□□□□ 0.55
SF3B1-204ENST00000414963 RXRBP28702 533 aa18.48■□□□□ 0.55
SF3B1-204ENST00000414963 MIS18AQ9NYP9 233 aa18.48■□□□□ 0.55
SF3B1-204ENST00000414963 A0A0G2JS52 829 aa18.47■□□□□ 0.55
SF3B1-204ENST00000414963 BTBD11A6QL63 1104 aa18.47■□□□□ 0.55
SF3B1-204ENST00000414963 MYT1Q01538 1121 aa18.47■□□□□ 0.55
SF3B1-204ENST00000414963 EXOSC9Q06265 439 aaKnown RBP18.47■□□□□ 0.55
SF3B1-204ENST00000414963 SIPA1L3O60292 1781 aaPredicted RBP18.46■□□□□ 0.55
SF3B1-204ENST00000414963 POTEAQ6S8J7 498 aa18.46■□□□□ 0.55
SF3B1-204ENST00000414963 SOS1Q07889 1333 aaPredicted RBP18.45■□□□□ 0.54
SF3B1-204ENST00000414963 ZNF428Q96B54 188 aa18.44■□□□□ 0.54
SF3B1-204ENST00000414963 TMOD3Q9NYL9 352 aa18.44■□□□□ 0.54
SF3B1-204ENST00000414963 VIRMAQ69YN4 1812 aaKnown RBP18.44■□□□□ 0.54
SF3B1-204ENST00000414963 TOGARAM1Q9Y4F4 1720 aa18.43■□□□□ 0.54
SF3B1-204ENST00000414963 EIF4A1P60842 406 aaKnown RBP18.43■□□□□ 0.54
SF3B1-204ENST00000414963 ZNF790Q6PG37 636 aa18.43■□□□□ 0.54
SF3B1-204ENST00000414963 C8orf58Q8NAV2 365 aa18.43■□□□□ 0.54
SF3B1-204ENST00000414963 PIGBQ92521 554 aa18.43■□□□□ 0.54
SF3B1-204ENST00000414963 RCAN3Q9UKA8 241 aa18.43■□□□□ 0.54
SF3B1-204ENST00000414963 HEG1Q9ULI3 1381 aa18.42■□□□□ 0.54
SF3B1-204ENST00000414963 VAMP4O75379 141 aa18.42■□□□□ 0.54
SF3B1-204ENST00000414963 PRIM1P49642 420 aaKnown RBP18.42■□□□□ 0.54
SF3B1-204ENST00000414963 KDM3BQ7LBC6 1761 aa18.42■□□□□ 0.54
SF3B1-204ENST00000414963 KCNQ3O43525 872 aa18.41■□□□□ 0.54
SF3B1-204ENST00000414963 KRT27Q7Z3Y8 459 aa18.41■□□□□ 0.54
SF3B1-204ENST00000414963 TSPYL6Q8N831 410 aa18.41■□□□□ 0.54
SF3B1-204ENST00000414963 HOXB7P09629 217 aa18.4■□□□□ 0.54
SF3B1-204ENST00000414963 TWISTNBQ3B726 338 aaPredicted RBP18.4■□□□□ 0.54
SF3B1-204ENST00000414963 SLC39A6Q13433 755 aa18.39■□□□□ 0.53
SF3B1-204ENST00000414963 RARSP54136 660 aaKnown RBP18.38■□□□□ 0.53
SF3B1-204ENST00000414963 KRT24Q2M2I5 525 aa18.38■□□□□ 0.53
SF3B1-204ENST00000414963 FAM196AQ6ZSG2 479 aa18.38■□□□□ 0.53
SF3B1-204ENST00000414963 TTC5Q8N0Z6 440 aa18.38■□□□□ 0.53
SF3B1-204ENST00000414963 ATG3Q9NT62 314 aa18.38■□□□□ 0.53
SF3B1-204ENST00000414963 GIGYF1O75420 1035 aaPredicted RBP18.37■□□□□ 0.53
SF3B1-204ENST00000414963 ALDH1L2Q3SY69 923 aa18.37■□□□□ 0.53
SF3B1-204ENST00000414963 FMNL2Q96PY5 1086 aa18.37■□□□□ 0.53
SF3B1-204ENST00000414963 CHMP4AQ9BY43 222 aa18.37■□□□□ 0.53
SF3B1-204ENST00000414963 RGS12O14924 1447 aa18.37■□□□□ 0.53
SF3B1-204ENST00000414963 ELL2O00472 640 aaPredicted RBP18.36■□□□□ 0.53
SF3B1-204ENST00000414963 ITGB4P16144 1822 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 PAPPAQ13219 1627 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 RNF123Q5XPI4 1314 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 DOT1LQ8TEK3 1739 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 SYTL4Q96C24 671 aaPredicted RBP18.36■□□□□ 0.53
SF3B1-204ENST00000414963 ACSBG1Q96GR2 724 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 ZNF496Q96IT1 587 aaPredicted RBP18.36■□□□□ 0.53
SF3B1-204ENST00000414963 ASAP1Q9ULH1 1129 aa18.36■□□□□ 0.53
SF3B1-204ENST00000414963 KCNQ2O43526 872 aa18.35■□□□□ 0.53
SF3B1-204ENST00000414963 BRPF1P55201 1214 aaPredicted RBP18.35■□□□□ 0.53
SF3B1-204ENST00000414963 KCPQ6ZWJ8 1503 aa18.34■□□□□ 0.53
SF3B1-204ENST00000414963 SNRPA1P09661 255 aaKnown RBP18.34■□□□□ 0.53
SF3B1-204ENST00000414963 FAM182BQ5T319 152 aa18.34■□□□□ 0.53
SF3B1-204ENST00000414963 BRWD3Q6RI45 1802 aa18.34■□□□□ 0.53
SF3B1-204ENST00000414963 VSIG10Q8N0Z9 540 aa18.33■□□□□ 0.52
SF3B1-204ENST00000414963 SSH1Q8WYL5 1049 aa18.33■□□□□ 0.52
SF3B1-204ENST00000414963 SMARCC1Q92922 1105 aaPredicted RBP18.33■□□□□ 0.52
SF3B1-204ENST00000414963 BCL11BQ9C0K0 894 aaPredicted RBP18.33■□□□□ 0.52
SF3B1-204ENST00000414963 UBR2Q8IWV8 1755 aa18.32■□□□□ 0.52
SF3B1-204ENST00000414963 SUPT16HQ9Y5B9 1047 aaKnown RBP18.32■□□□□ 0.52
SF3B1-204ENST00000414963 NHSQ6T4R5 1651 aa18.31■□□□□ 0.52
SF3B1-204ENST00000414963 BCAR3O75815 825 aa18.31■□□□□ 0.52
SF3B1-204ENST00000414963 CCDC30Q5VVM6 783 aa18.31■□□□□ 0.52
SF3B1-204ENST00000414963 MRPL50Q8N5N7 158 aaKnown RBP18.3■□□□□ 0.52
SF3B1-204ENST00000414963 TEX13AQ9BXU3 409 aaPredicted RBP18.3■□□□□ 0.52
SF3B1-204ENST00000414963 PTCD1O75127 700 aaKnown RBP18.29■□□□□ 0.52
SF3B1-204ENST00000414963 HDGFL1Q5TGJ6 251 aa18.29■□□□□ 0.52
SF3B1-204ENST00000414963 PTF1AQ7RTS3 328 aa18.29■□□□□ 0.52
SF3B1-204ENST00000414963 SMC4Q9NTJ3 1288 aa18.29■□□□□ 0.52
SF3B1-204ENST00000414963 SBF2Q86WG5 1849 aa18.28■□□□□ 0.52
SF3B1-204ENST00000414963 PRAMEF22A3QJZ6 481 aa18.27■□□□□ 0.52
SF3B1-204ENST00000414963 RRP1P56182 461 aaKnown RBP18.27■□□□□ 0.52
SF3B1-204ENST00000414963 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.27■□□□□ 0.52
SF3B1-204ENST00000414963 SLC4A9Q96Q91 983 aa18.27■□□□□ 0.52
SF3B1-204ENST00000414963 USP16Q9Y5T5 823 aa18.27■□□□□ 0.52
SF3B1-204ENST00000414963 PALLDQ8WX93 1383 aa18.27■□□□□ 0.51
SF3B1-204ENST00000414963 EIF2S2P20042 333 aaKnown RBP18.26■□□□□ 0.51
SF3B1-204ENST00000414963 ARHGAP45Q92619 1136 aa18.26■□□□□ 0.51
SF3B1-204ENST00000414963 RBM42Q9BTD8 480 aaKnown RBP18.26■□□□□ 0.51
SF3B1-204ENST00000414963 BCL2L13Q9BXK5 485 aa18.26■□□□□ 0.51
SF3B1-204ENST00000414963 STK31Q9BXU1 1019 aa18.26■□□□□ 0.51
SF3B1-204ENST00000414963 ERBB4Q15303 1308 aa18.25■□□□□ 0.51
SF3B1-204ENST00000414963 KIF16BQ96L93 1317 aa18.25■□□□□ 0.51
SF3B1-204ENST00000414963 LOC102724428A0A0B4J2F2 783 aa18.25■□□□□ 0.51
SF3B1-204ENST00000414963 SLC4A2P04920 1241 aa18.25■□□□□ 0.51
SF3B1-204ENST00000414963 SIK1P57059 783 aa18.25■□□□□ 0.51
SF3B1-204ENST00000414963 DBF4Q9UBU7 674 aaPredicted RBP18.25■□□□□ 0.51
SF3B1-204ENST00000414963 KAT6BQ8WYB5 2073 aa18.24■□□□□ 0.51
SF3B1-204ENST00000414963 TCERG1O14776 1098 aaKnown RBP18.24■□□□□ 0.51
SF3B1-204ENST00000414963 IPO8O15397 1037 aaKnown RBP18.24■□□□□ 0.51
SF3B1-204ENST00000414963 TRIM37O94972 964 aa18.24■□□□□ 0.51
SF3B1-204ENST00000414963 STARD3NLO95772 234 aa18.24■□□□□ 0.51
SF3B1-204ENST00000414963 PDIA6Q15084 440 aa18.24■□□□□ 0.51
SF3B1-204ENST00000414963 DDX21Q9NR30 783 aaKnown RBP eCLIP18.24■□□□□ 0.51
SF3B1-204ENST00000414963 BTAF1O14981 1849 aa18.23■□□□□ 0.51
SF3B1-204ENST00000414963 ZNF831Q5JPB2 1677 aa18.23■□□□□ 0.51
SF3B1-204ENST00000414963 DNAJC10Q8IXB1 793 aa18.23■□□□□ 0.51
SF3B1-204ENST00000414963 CHPF2Q9P2E5 772 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms