RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SEC63Q9UGP8 760 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 MAP4K4O95819 1239 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 DNAJC21Q5F1R6 531 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 TMEM87AQ8NBN3 555 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 STIM2Q9P246 746 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 NACADO15069 1562 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 URI1O94763 535 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 CEP57Q86XR8 500 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 TCHPQ9BT92 498 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 K7ELQ4 463 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 DNA2P51530 1060 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 NUTM2FA1L443 756 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 CETN1Q12798 172 aa15.43■□□□□ 0.06
CCDC88A-204ENST00000413716 DIAPH1O60610 1272 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 STMN1P16949 149 aa15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 YEATS4O95619 227 aa15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 SCLT1Q96NL6 688 aa15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 TTC31Q49AM3 519 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 RASAL2Q9UJF2 1139 aa15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 AIMP1Q12904 312 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-204ENST00000413716 CCDC110Q8TBZ0 833 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 RUNDC1Q96C34 613 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 RGS22Q8NE09 1264 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 CLIP2Q9UDT6 1046 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 SATB1Q01826 763 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 ZSCAN25Q6NSZ9 544 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 CCDC121Q6ZUS5 278 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 EPSTI1Q96J88 318 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 PLVAPQ9BX97 442 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 MIA2Q96PC5 1412 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 ZBTB16Q05516 673 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 UBAC1Q9BSL1 405 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 NEMFO60524 1076 aa15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 PRPF4BQ13523 1007 aaKnown RBP15.41■□□□□ 0.06
CCDC88A-204ENST00000413716 IFI16Q16666 785 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 SYCE3A1L190 88 aa15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 JADE2Q9NQC1 790 aa15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 FAM114A2Q9NRY5 505 aa15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 RNF168Q8IYW5 571 aaPredicted RBP15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 RABGAP1Q9Y3P9 1069 aa15.4■□□□□ 0.06
CCDC88A-204ENST00000413716 ATP2C2O75185 946 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 GNAI3P08754 354 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 RFC1P35251 1148 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 GSDMDP57764 484 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 WDR63Q8IWG1 891 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 NDC80O14777 642 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 CNNM1Q9NRU3 951 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 CASQ2O14958 399 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 ARID4AP29374 1257 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 SH3BP5O60239 455 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 C16orf45Q96MC5 204 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 PPP6R1Q9UPN7 881 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 GBP6Q6ZN66 633 aa15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 TTC12Q9H892 705 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC96Q2M329 555 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 FLIIQ13045 1269 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 PHAXQ9H814 394 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 ANO10Q9NW15 660 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 KIAA0753Q2KHM9 967 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 VCX3BQ9H321 246 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 TDRD12Q587J7 1177 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 SMG6Q86US8 1419 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC183Q5T5S1 534 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 NAA25Q14CX7 972 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 CAMK4Q16566 473 aa15.38■□□□□ 0.05
CCDC88A-204ENST00000413716 NBPF1Q3BBV0 1214 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 KRT222Q8N1A0 295 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 ZNF853P0CG23 659 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 RAB34Q9BZG1 259 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC18Q5T9S5 1454 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 NUTM2DQ5VT03 806 aaPredicted RBP15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 PPFIA2O75334 1257 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 RBM5P52756 815 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 STMN2Q93045 179 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 USP47Q96K76 1375 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 PAXBP1Q9Y5B6 917 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC30Q5VVM6 783 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 KLHL10Q6JEL2 608 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 SRRTQ9BXP5 876 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 PSME1Q06323 249 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 SEPT14Q6ZU15 432 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 PANK1Q8TE04 598 aa15.37■□□□□ 0.05
CCDC88A-204ENST00000413716 WASHC2CQ9Y4E1 1318 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 LUC7L2Q9Y383 392 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 PRC1O43663 620 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 ATP11AP98196 1134 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 WHAMMQ8TF30 809 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 UBA5Q9GZZ9 404 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 SURF6O75683 361 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 KIF20AO95235 890 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 RSPH14Q9UHP6 348 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 APAF1O14727 1248 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 CIB2O75838 187 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 KRT32Q14532 448 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 OTUD6BQ8N6M0 293 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 DZIP1Q86YF9 867 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 TRAK1Q9UPV9 953 aa15.36■□□□□ 0.05
CCDC88A-204ENST00000413716 SNX16P57768 344 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 ZSCAN31Q96LW9 406 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC171Q6TFL3 1326 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms