RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SLC52A2Q9HAB3 445 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 PPP1R1BQ9UD71 204 aaPredicted RBP8.51□□□□□ -1.05
USP54-202ENST00000413442 COL3A1P02461 1466 aaPredicted RBP8.51□□□□□ -1.05
USP54-202ENST00000413442 CASZ1Q86V15 1759 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 RNMTO43148 476 aaKnown RBP8.5□□□□□ -1.05
USP54-202ENST00000413442 HMOX1P09601 288 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 U2AF1L5P0DN76 240 aaPredicted RBP8.5□□□□□ -1.05
USP54-202ENST00000413442 U2AF1Q01081 240 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP54-202ENST00000413442 TEFQ10587 303 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 DDX10Q13206 875 aaKnown RBP8.5□□□□□ -1.05
USP54-202ENST00000413442 COL24A1Q17RW2 1714 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 RTF1Q92541 710 aaKnown RBP8.5□□□□□ -1.05
USP54-202ENST00000413442 AK7Q96M32 723 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 ANO8Q9HCE9 1232 aaPredicted RBP8.5□□□□□ -1.05
USP54-202ENST00000413442 ASAP1Q9ULH1 1129 aa8.5□□□□□ -1.05
USP54-202ENST00000413442 ADAMTS7Q9UKP4 1686 aa8.49□□□□□ -1.05
USP54-202ENST00000413442 NLGN1Q8N2Q7 840 aa8.49□□□□□ -1.05
USP54-202ENST00000413442 PNISRQ8TF01 805 aaKnown RBP8.49□□□□□ -1.05
USP54-202ENST00000413442 RSPH6AQ9H0K4 717 aa8.49□□□□□ -1.05
USP54-202ENST00000413442 VIRMAQ69YN4 1812 aaKnown RBP8.49□□□□□ -1.05
USP54-202ENST00000413442 C5P01031 1676 aa8.49□□□□□ -1.05
USP54-202ENST00000413442 MYBBP1AQ9BQG0 1328 aaKnown RBP8.49□□□□□ -1.05
USP54-202ENST00000413442 TOGARAM1Q9Y4F4 1720 aa8.49□□□□□ -1.05
USP54-202ENST00000413442 MAP3K5Q99683 1374 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 RPS6KA4O75676 772 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 TRAPPC3LQ5T215 181 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 ARXQ96QS3 562 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 BABAM1Q9NWV8 329 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 RTCBQ9Y3I0 505 aaKnown RBP8.48□□□□□ -1.05
USP54-202ENST00000413442 PNPLA7Q6ZV29 1317 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 CNTNAP4Q9C0A0 1308 aa8.48□□□□□ -1.05
USP54-202ENST00000413442 CICQ96RK0 1608 aaPredicted RBP8.47□□□□□ -1.05
USP54-202ENST00000413442 KDM6AO15550 1401 aaPredicted RBP8.47□□□□□ -1.05
USP54-202ENST00000413442 C4BP0C0L5 1744 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 ZNF316A6NFI3 1004 aaPredicted RBP8.47□□□□□ -1.05
USP54-202ENST00000413442 STARD3NLO95772 234 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 PRKAR2BP31323 418 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 PTGER2P43116 358 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 LMOD3Q0VAK6 560 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 ZNF827Q17R98 1081 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 TTC5Q8N0Z6 440 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 SGIP1Q9BQI5 828 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 RBM42Q9BTD8 480 aaKnown RBP8.47□□□□□ -1.05
USP54-202ENST00000413442 LGR6Q9HBX8 967 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 CEMIPQ8WUJ3 1361 aa8.47□□□□□ -1.05
USP54-202ENST00000413442 MRC1P22897 1456 aa8.46□□□□□ -1.05
USP54-202ENST00000413442 COL23A1Q86Y22 540 aaPredicted RBP8.46□□□□□ -1.06
USP54-202ENST00000413442 IL17REQ8NFR9 667 aa8.46□□□□□ -1.06
USP54-202ENST00000413442 PRKRIP1Q9H875 184 aaPredicted RBP8.46□□□□□ -1.06
USP54-202ENST00000413442 UBR3Q6ZT12 1888 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 A0A087WZG4 1122 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 RGL2O15211 777 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 ZBTB7AO95365 584 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 TAF7Q15545 349 aaPredicted RBP8.45□□□□□ -1.06
USP54-202ENST00000413442 NCBP3Q53F19 620 aaKnown RBP8.45□□□□□ -1.06
USP54-202ENST00000413442 ZNF790Q6PG37 636 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 PHACTR3Q96KR7 559 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 PLEKHF1Q96S99 279 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 CHMP4AQ9BY43 222 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 ATF5Q9Y2D1 282 aaPredicted RBP8.45□□□□□ -1.06
USP54-202ENST00000413442 CD2APQ9Y5K6 639 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 MAPK8IP3Q9UPT6 1336 aa8.45□□□□□ -1.06
USP54-202ENST00000413442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.44□□□□□ -1.06
USP54-202ENST00000413442 PTCD1O75127 700 aaKnown RBP8.44□□□□□ -1.06
USP54-202ENST00000413442 RFC4P35249 363 aa8.44□□□□□ -1.06
USP54-202ENST00000413442 ITPK1Q13572 414 aa8.44□□□□□ -1.06
USP54-202ENST00000413442 CNGB1Q14028 1251 aaPredicted RBP8.44□□□□□ -1.06
USP54-202ENST00000413442 WDR43Q15061 677 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP54-202ENST00000413442 NPM2Q86SE8 214 aaKnown RBP8.44□□□□□ -1.06
USP54-202ENST00000413442 FMNL2Q96PY5 1086 aa8.44□□□□□ -1.06
USP54-202ENST00000413442 SYT17Q9BSW7 474 aa8.44□□□□□ -1.06
USP54-202ENST00000413442 COL5A3P25940 1745 aaPredicted RBP8.43□□□□□ -1.06
USP54-202ENST00000413442 BTBD11A6QL63 1104 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 GNPATO15228 680 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 KCNQ4P56696 695 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 NFE2L2Q16236 605 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 LINC00116Q8NCU8 138 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 RUNDC1Q96C34 613 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 CCDC87Q9NVE4 849 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 SIPA1L3O60292 1781 aaPredicted RBP8.43□□□□□ -1.06
USP54-202ENST00000413442 TUBGCP6Q96RT7 1819 aa8.43□□□□□ -1.06
USP54-202ENST00000413442 CYP19A1P11511 503 aaPredicted RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 IL6STP40189 918 aaPredicted RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 CRKLP46109 303 aaKnown RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 CALD1Q05682 793 aaKnown RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 ARHGEF1Q92888 912 aaKnown RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 SLC4A9Q96Q91 983 aa8.42□□□□□ -1.06
USP54-202ENST00000413442 PDGFDQ9GZP0 370 aaPredicted RBP8.42□□□□□ -1.06
USP54-202ENST00000413442 PDZRN3Q9UPQ7 1066 aa8.42□□□□□ -1.06
USP54-202ENST00000413442 UBR2Q8IWV8 1755 aa8.42□□□□□ -1.06
USP54-202ENST00000413442 HEG1Q9ULI3 1381 aa8.41□□□□□ -1.06
USP54-202ENST00000413442 GRIN3BO60391 1043 aa8.41□□□□□ -1.06
USP54-202ENST00000413442 ZPR1O75312 459 aa8.41□□□□□ -1.06
USP54-202ENST00000413442 SNRPA1P09661 255 aaKnown RBP8.41□□□□□ -1.06
USP54-202ENST00000413442 TGFB2P61812 414 aa8.41□□□□□ -1.06
USP54-202ENST00000413442 INTS5Q6P9B9 1019 aaKnown RBP8.41□□□□□ -1.06
USP54-202ENST00000413442 NGEFQ8N5V2 710 aa8.41□□□□□ -1.06
USP54-202ENST00000413442 FHDC1Q9C0D6 1143 aaPredicted RBP8.41□□□□□ -1.06
USP54-202ENST00000413442 MYH14Q7Z406 1995 aaKnown RBP8.41□□□□□ -1.06
USP54-202ENST00000413442 DLG5Q8TDM6 1919 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms