RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 FLIIQ13045 1269 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 ARHGAP45Q92619 1136 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 PTPRUQ92729 1446 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 SURF6O75683 361 aaKnown RBP10.45□□□□□ -0.74
SYNE1-211ENST00000413186 DNAAF4Q8WXU2 420 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 CDK12Q9NYV4 1490 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-211ENST00000413186 MYO3AQ8NEV4 1616 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 NFATC2IPQ8NCF5 419 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 VPS37DQ86XT2 251 aa10.45□□□□□ -0.74
SYNE1-211ENST00000413186 WDR17Q8IZU2 1322 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 FAM177BA6PVY3 158 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 PTMSP20962 102 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 MED14O60244 1454 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 HOXB7P09629 217 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 STK11IPQ8N1F8 1099 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 RUFY2Q8WXA3 655 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 IGSF1Q8N6C5 1336 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 CPSF1Q10570 1443 aaKnown RBP10.44□□□□□ -0.74
SYNE1-211ENST00000413186 TRPC5Q9UL62 973 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-211ENST00000413186 C3P01024 1663 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 AK7Q96M32 723 aa10.44□□□□□ -0.74
SYNE1-211ENST00000413186 KAT6BQ8WYB5 2073 aa10.43□□□□□ -0.74
SYNE1-211ENST00000413186 BLMP54132 1417 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-211ENST00000413186 ERBB3P21860 1342 aa10.43□□□□□ -0.74
SYNE1-211ENST00000413186 TMEM57Q8N5G2 664 aa10.43□□□□□ -0.74
SYNE1-211ENST00000413186 NAP1L5Q96NT1 182 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-211ENST00000413186 IPO9Q96P70 1041 aaKnown RBP10.43□□□□□ -0.74
SYNE1-211ENST00000413186 CCDC57Q2TAC2 916 aa10.43□□□□□ -0.74
SYNE1-211ENST00000413186 ACSBG1Q96GR2 724 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 IQGAP1P46940 1657 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 ERVV-2B6SEH9 535 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 RILPL2Q969X0 211 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 SLC39A6Q13433 755 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 DNTTIP2Q5QJE6 756 aaKnown RBP10.42□□□□□ -0.74
SYNE1-211ENST00000413186 FAM98CQ17RN3 349 aaKnown RBP10.42□□□□□ -0.74
SYNE1-211ENST00000413186 DIAPH3Q9NSV4 1193 aa10.42□□□□□ -0.74
SYNE1-211ENST00000413186 ATP6V1AP38606 617 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 HSCBQ8IWL3 235 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 ZNF772Q68DY9 489 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-211ENST00000413186 NEUROD6Q96NK8 337 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 MYD88Q99836 296 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 NOL10Q9BSC4 688 aaKnown RBP10.41□□□□□ -0.74
SYNE1-211ENST00000413186 LNPKQ9C0E8 428 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 CHL1O00533 1208 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 SLC52A2Q9HAB3 445 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 CNNM1Q9NRU3 951 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 ANKRD13DQ6ZTN6 518 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 MPHOSPH8Q99549 860 aa10.41□□□□□ -0.74
SYNE1-211ENST00000413186 ZNF790Q6PG37 636 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 C8orf58Q8NAV2 365 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 JCADQ9P266 1359 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 CPS1P31327 1500 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 SRGAP3O43295 1099 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 FAM161AQ3B820 660 aa10.4□□□□□ -0.74
SYNE1-211ENST00000413186 THRAP3Q9Y2W1 955 aaKnown RBP10.4□□□□□ -0.74
SYNE1-211ENST00000413186 VAMP4O75379 141 aa10.4□□□□□ -0.75
SYNE1-211ENST00000413186 TRIM27P14373 513 aa10.4□□□□□ -0.75
SYNE1-211ENST00000413186 PHKG2P15735 406 aa10.4□□□□□ -0.75
SYNE1-211ENST00000413186 BCL11BQ9C0K0 894 aaPredicted RBP10.4□□□□□ -0.75
SYNE1-211ENST00000413186 RTN4Q9NQC3 1192 aaKnown RBP10.4□□□□□ -0.75
SYNE1-211ENST00000413186 TRIM35Q9UPQ4 493 aa10.4□□□□□ -0.75
SYNE1-211ENST00000413186 UBR1Q8IWV7 1749 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 PI4KAP2A4QPH2 592 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 REC8O95072 547 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 PI4KAP1Q8N8J0 262 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 C1orf115Q9H7X2 142 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 CHPF2Q9P2E5 772 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 NAP1L2Q9ULW6 460 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-211ENST00000413186 ALDH1L1O75891 902 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 MFAP1P55081 439 aaKnown RBP10.39□□□□□ -0.75
SYNE1-211ENST00000413186 PPP1R42Q7Z4L9 355 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 UNC5CLQ8IV45 518 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 KLHL34Q8N239 644 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 ZBTB3Q9H5J0 574 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 CWC25Q9NXE8 425 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-211ENST00000413186 CEP126Q9P2H0 1117 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 MAP3K2Q9Y2U5 619 aa10.39□□□□□ -0.75
SYNE1-211ENST00000413186 RFC4P35249 363 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 LRRCC1Q9C099 1032 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 GNL3LQ9NVN8 582 aaKnown RBP10.38□□□□□ -0.75
SYNE1-211ENST00000413186 TRMT112Q9UI30 125 aaKnown RBP10.38□□□□□ -0.75
SYNE1-211ENST00000413186 IGHMBP2P38935 993 aaKnown RBP10.38□□□□□ -0.75
SYNE1-211ENST00000413186 KSR2Q6VAB6 950 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 DDX21Q9NR30 783 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE1-211ENST00000413186 F6X3S4 739 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 PDE4AP27815 886 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 BICDL1Q6ZP65 573 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 XAGE3Q8WTP9 111 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 QTRT2Q9H974 415 aaKnown RBP10.38□□□□□ -0.75
SYNE1-211ENST00000413186 LGR6Q9HBX8 967 aa10.38□□□□□ -0.75
SYNE1-211ENST00000413186 COPS6Q7L5N1 327 aa10.37□□□□□ -0.75
SYNE1-211ENST00000413186 MRPL50Q8N5N7 158 aaKnown RBP10.37□□□□□ -0.75
SYNE1-211ENST00000413186 SPATA31A6Q5VVP1 1343 aa10.37□□□□□ -0.75
SYNE1-211ENST00000413186 CCDC158Q5M9N0 1113 aa10.37□□□□□ -0.75
SYNE1-211ENST00000413186 AMOTL1Q8IY63 956 aa10.37□□□□□ -0.75
SYNE1-211ENST00000413186 RAB11FIP3O75154 756 aa10.36□□□□□ -0.75
SYNE1-211ENST00000413186 PRIM1P49642 420 aaKnown RBP10.36□□□□□ -0.75
SYNE1-211ENST00000413186 PLEKHF1Q96S99 279 aa10.36□□□□□ -0.75
SYNE1-211ENST00000413186 SOS2Q07890 1332 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-211ENST00000413186 INTS3Q68E01 1043 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms