RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 SIK1P57059 783 aa27.66■■■□□ 2.02
VSX1-204ENST00000409958 SLC52A2Q9HAB3 445 aa27.66■■■□□ 2.02
VSX1-204ENST00000409958 MRC1P22897 1456 aa27.65■■■□□ 2.02
VSX1-204ENST00000409958 GNAT3A8MTJ3 354 aa27.65■■■□□ 2.02
VSX1-204ENST00000409958 CASZ1Q86V15 1759 aa27.64■■■□□ 2.02
VSX1-204ENST00000409958 C5P01031 1676 aa27.62■■■□□ 2.01
VSX1-204ENST00000409958 VIRMAQ69YN4 1812 aaKnown RBP27.61■■■□□ 2.01
VSX1-204ENST00000409958 TAF1LQ8IZX4 1826 aa27.61■■■□□ 2.01
VSX1-204ENST00000409958 PNNQ9H307 717 aaKnown RBP27.61■■■□□ 2.01
VSX1-204ENST00000409958 TFCP2L1Q9NZI6 479 aa27.61■■■□□ 2.01
VSX1-204ENST00000409958 NEFMP07197 916 aa27.6■■■□□ 2.01
VSX1-204ENST00000409958 IL17REQ8NFR9 667 aa27.6■■■□□ 2.01
VSX1-204ENST00000409958 QSER1Q2KHR3 1735 aa27.59■■■□□ 2.01
VSX1-204ENST00000409958 ATP6V1AP38606 617 aa27.59■■■□□ 2.01
VSX1-204ENST00000409958 PLEKHF1Q96S99 279 aa27.59■■■□□ 2.01
VSX1-204ENST00000409958 RBM42Q9BTD8 480 aaKnown RBP27.58■■■□□ 2.01
VSX1-204ENST00000409958 SPON1Q9HCB6 807 aa27.58■■■□□ 2.01
VSX1-204ENST00000409958 ZNF831Q5JPB2 1677 aa27.57■■■□□ 2
VSX1-204ENST00000409958 ZBTB7AO95365 584 aa27.57■■■□□ 2
VSX1-204ENST00000409958 ITPK1Q13572 414 aa27.57■■■□□ 2
VSX1-204ENST00000409958 PNPLA7Q6ZV29 1317 aa27.57■■■□□ 2
VSX1-204ENST00000409958 SLC4A9Q96Q91 983 aa27.56■■■□□ 2
VSX1-204ENST00000409958 CEMIPQ8WUJ3 1361 aa27.55■■■□□ 2
VSX1-204ENST00000409958 C4BP0C0L5 1744 aa27.55■■■□□ 2
VSX1-204ENST00000409958 LINC00116Q8NCU8 138 aa27.55■■■□□ 2
VSX1-204ENST00000409958 TUBGCP6Q96RT7 1819 aa27.55■■■□□ 2
VSX1-204ENST00000409958 HTATSF1O43719 755 aaKnown RBP27.54■■■□□ 2
VSX1-204ENST00000409958 TEFQ10587 303 aa27.54■■■□□ 2
VSX1-204ENST00000409958 PTCD1O75127 700 aaKnown RBP27.53■■■□□ 2
VSX1-204ENST00000409958 RTF1Q92541 710 aaKnown RBP27.53■■■□□ 2
VSX1-204ENST00000409958 AK7Q96M32 723 aa27.53■■■□□ 2
VSX1-204ENST00000409958 MTFR1LQ9H019 292 aa27.53■■■□□ 2
VSX1-204ENST00000409958 SLC16A10Q8TF71 515 aa27.52■■■□□ 2
VSX1-204ENST00000409958 MAPK8IP3Q9UPT6 1336 aa27.52■■■□□ 2
VSX1-204ENST00000409958 SLC39A6Q13433 755 aa27.51■■□□□ 1.99
VSX1-204ENST00000409958 WDR43Q15061 677 aaKnown RBP eCLIP27.51■■□□□ 1.99
VSX1-204ENST00000409958 FLAD1Q8NFF5 587 aa27.5■■□□□ 1.99
VSX1-204ENST00000409958 NFE2L2Q16236 605 aa27.49■■□□□ 1.99
VSX1-204ENST00000409958 ATF5Q9Y2D1 282 aaPredicted RBP27.49■■□□□ 1.99
VSX1-204ENST00000409958 ANP32CO43423 234 aa27.48■■□□□ 1.99
VSX1-204ENST00000409958 SIPA1L3O60292 1781 aaPredicted RBP27.48■■□□□ 1.99
VSX1-204ENST00000409958 MCM10Q7L590 875 aa27.48■■□□□ 1.99
VSX1-204ENST00000409958 COL23A1Q86Y22 540 aaPredicted RBP27.48■■□□□ 1.99
VSX1-204ENST00000409958 RC3H1Q5TC82 1133 aaKnown RBP27.46■■□□□ 1.99
VSX1-204ENST00000409958 TTC5Q8N0Z6 440 aa27.46■■□□□ 1.99
VSX1-204ENST00000409958 PPP1R1BQ9UD71 204 aaPredicted RBP27.46■■□□□ 1.99
VSX1-204ENST00000409958 CICQ96RK0 1608 aaPredicted RBP27.46■■□□□ 1.99
VSX1-204ENST00000409958 KCPQ6ZWJ8 1503 aa27.46■■□□□ 1.99
VSX1-204ENST00000409958 UBR3Q6ZT12 1888 aa27.46■■□□□ 1.99
VSX1-204ENST00000409958 CNTNAP4Q9C0A0 1308 aa27.45■■□□□ 1.99
VSX1-204ENST00000409958 COL5A3P25940 1745 aaPredicted RBP27.45■■□□□ 1.99
VSX1-204ENST00000409958 SSFA2P28290 1259 aa27.45■■□□□ 1.99
VSX1-204ENST00000409958 PTGER2P43116 358 aa27.45■■□□□ 1.99
VSX1-204ENST00000409958 GNPATO15228 680 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 MSH5O43196 834 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 DCTN1Q14203 1278 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 ZNF790Q6PG37 636 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 AMIGO3Q86WK7 504 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 ADAMTS8Q9UP79 889 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 DLG5Q8TDM6 1919 aa27.44■■□□□ 1.98
VSX1-204ENST00000409958 VSIG10Q8N0Z9 540 aa27.43■■□□□ 1.98
VSX1-204ENST00000409958 SGIP1Q9BQI5 828 aa27.43■■□□□ 1.98
VSX1-204ENST00000409958 UBR2Q8IWV8 1755 aa27.43■■□□□ 1.98
VSX1-204ENST00000409958 TJP1Q07157 1748 aa27.43■■□□□ 1.98
VSX1-204ENST00000409958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.42■■□□□ 1.98
VSX1-204ENST00000409958 BTBD11A6QL63 1104 aa27.42■■□□□ 1.98
VSX1-204ENST00000409958 PHF14O94880 888 aa27.41■■□□□ 1.98
VSX1-204ENST00000409958 DNAJC10Q8IXB1 793 aa27.41■■□□□ 1.98
VSX1-204ENST00000409958 RUNDC1Q96C34 613 aa27.41■■□□□ 1.98
VSX1-204ENST00000409958 RTCBQ9Y3I0 505 aaKnown RBP27.41■■□□□ 1.98
VSX1-204ENST00000409958 CRKLP46109 303 aaKnown RBP27.4■■□□□ 1.98
VSX1-204ENST00000409958 CCDC146Q8IYE0 955 aa27.4■■□□□ 1.98
VSX1-204ENST00000409958 MYH14Q7Z406 1995 aaKnown RBP27.39■■□□□ 1.98
VSX1-204ENST00000409958 RPS6KA4O75676 772 aa27.39■■□□□ 1.97
VSX1-204ENST00000409958 TMPOP42166 694 aaKnown RBP27.39■■□□□ 1.97
VSX1-204ENST00000409958 RIPK4P57078 832 aa27.39■■□□□ 1.97
VSX1-204ENST00000409958 SMIM5Q71RC9 77 aa27.39■■□□□ 1.97
VSX1-204ENST00000409958 ZNF496Q96IT1 587 aaPredicted RBP27.39■■□□□ 1.97
VSX1-204ENST00000409958 COL24A1Q17RW2 1714 aa27.38■■□□□ 1.97
VSX1-204ENST00000409958 ADRA2BP18089 450 aa27.38■■□□□ 1.97
VSX1-204ENST00000409958 TAF7Q15545 349 aaPredicted RBP27.38■■□□□ 1.97
VSX1-204ENST00000409958 FMNL2Q96PY5 1086 aa27.38■■□□□ 1.97
VSX1-204ENST00000409958 CYP19A1P11511 503 aaPredicted RBP27.37■■□□□ 1.97
VSX1-204ENST00000409958 CCDC184Q52MB2 194 aa27.37■■□□□ 1.97
VSX1-204ENST00000409958 HEG1Q9ULI3 1381 aa27.37■■□□□ 1.97
VSX1-204ENST00000409958 KCNQ3O43525 872 aa27.36■■□□□ 1.97
VSX1-204ENST00000409958 POLD1P28340 1107 aa27.36■■□□□ 1.97
VSX1-204ENST00000409958 TRAPPC3LQ5T215 181 aa27.36■■□□□ 1.97
VSX1-204ENST00000409958 LMOD3Q0VAK6 560 aa27.35■■□□□ 1.97
VSX1-204ENST00000409958 INTS5Q6P9B9 1019 aaKnown RBP27.35■■□□□ 1.97
VSX1-204ENST00000409958 PNISRQ8TF01 805 aaKnown RBP27.34■■□□□ 1.97
VSX1-204ENST00000409958 ARXQ96QS3 562 aa27.34■■□□□ 1.97
VSX1-204ENST00000409958 THUMPD2Q9BTF0 503 aaKnown RBP27.34■■□□□ 1.97
VSX1-204ENST00000409958 TEX13AQ9BXU3 409 aaPredicted RBP27.34■■□□□ 1.97
VSX1-204ENST00000409958 CCDC87Q9NVE4 849 aa27.34■■□□□ 1.97
VSX1-204ENST00000409958 STARD3NLO95772 234 aa27.32■■□□□ 1.96
VSX1-204ENST00000409958 MSL1Q68DK7 614 aa27.32■■□□□ 1.96
VSX1-204ENST00000409958 ARHGEF1Q92888 912 aaKnown RBP27.32■■□□□ 1.96
VSX1-204ENST00000409958 RRP7AQ9Y3A4 280 aaKnown RBP27.32■■□□□ 1.96
VSX1-204ENST00000409958 MRS2Q9HD23 443 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms