RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PURBQ96QR8 312 aaKnown RBP10.36□□□□□ -0.75
USP40-202ENST00000409945 ADH1CP00326 375 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 FOXC1Q12948 553 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 PPP1R26Q5T8A7 1209 aaPredicted RBP10.35□□□□□ -0.75
USP40-202ENST00000409945 IFFO2Q5TF58 517 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 LARGE2Q8N3Y3 721 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 IVNS1ABPQ9Y6Y0 642 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 PRMT3O60678 531 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 SSFA2P28290 1259 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 SCNN1DP51172 638 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 ZNF697Q5TEC3 545 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 CYB5RLQ6IPT4 315 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 CAPN12Q6ZSI9 719 aa10.35□□□□□ -0.75
USP40-202ENST00000409945 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP40-202ENST00000409945 CDV3Q9UKY7 258 aaKnown RBP10.35□□□□□ -0.75
USP40-202ENST00000409945 TMEM229AB2RXF0 380 aa10.34□□□□□ -0.75
USP40-202ENST00000409945 USP4Q13107 963 aa10.34□□□□□ -0.75
USP40-202ENST00000409945 OCLNQ16625 522 aa10.34□□□□□ -0.75
USP40-202ENST00000409945 PRIMPOLQ96LW4 560 aa10.34□□□□□ -0.75
USP40-202ENST00000409945 A0A0G2JS52 829 aa10.33□□□□□ -0.76
USP40-202ENST00000409945 TRIM50Q86XT4 487 aa10.33□□□□□ -0.76
USP40-202ENST00000409945 PRKD2Q9BZL6 878 aa10.33□□□□□ -0.76
USP40-202ENST00000409945 NUP160Q12769 1436 aa10.33□□□□□ -0.76
USP40-202ENST00000409945 ATP1A2P50993 1020 aa10.33□□□□□ -0.76
USP40-202ENST00000409945 IGF1RP08069 1367 aa10.32□□□□□ -0.76
USP40-202ENST00000409945 J3QL48 77 aa10.32□□□□□ -0.76
USP40-202ENST00000409945 ALDH1A1P00352 501 aa10.32□□□□□ -0.76
USP40-202ENST00000409945 TRIM67Q6ZTA4 783 aa10.32□□□□□ -0.76
USP40-202ENST00000409945 TNFRSF10AO00220 468 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 CCDC116Q8IYX3 515 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 KDF1Q8NAX2 398 aaPredicted RBP10.31□□□□□ -0.76
USP40-202ENST00000409945 CLP1Q92989 425 aaKnown RBP10.31□□□□□ -0.76
USP40-202ENST00000409945 RAB6BQ9NRW1 208 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 SEC13P55735 322 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 CARMIL1Q5VZK9 1371 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 CEP170Q5SW79 1584 aa10.31□□□□□ -0.76
USP40-202ENST00000409945 ATP2B4P23634 1241 aa10.3□□□□□ -0.76
USP40-202ENST00000409945 SERPINB4P48594 390 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 CBLBQ13191 982 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 CC2D2BQ6DHV5 1058 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 ZNF598Q86UK7 904 aaKnown RBP10.29□□□□□ -0.76
USP40-202ENST00000409945 MPNDQ8N594 471 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 ETNK1Q9HBU6 452 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 ZNF358Q9NW07 568 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 KCNA1Q09470 495 aa10.29□□□□□ -0.76
USP40-202ENST00000409945 ARAP1Q96P48 1450 aa10.28□□□□□ -0.76
USP40-202ENST00000409945 ITPKCQ96DU7 683 aa10.28□□□□□ -0.76
USP40-202ENST00000409945 KLF16Q9BXK1 252 aaPredicted RBP10.28□□□□□ -0.76
USP40-202ENST00000409945 GDF9O60383 454 aa10.27□□□□□ -0.76
USP40-202ENST00000409945 NNTQ13423 1086 aa10.27□□□□□ -0.76
USP40-202ENST00000409945 TXNDC2Q86VQ3 553 aa10.27□□□□□ -0.76
USP40-202ENST00000409945 MYCP01106 439 aaPredicted RBP10.27□□□□□ -0.77
USP40-202ENST00000409945 SWI5Q1ZZU3 235 aa10.27□□□□□ -0.77
USP40-202ENST00000409945 TNS4Q8IZW8 715 aa10.27□□□□□ -0.77
USP40-202ENST00000409945 ZFAND3Q9H8U3 227 aa10.27□□□□□ -0.77
USP40-202ENST00000409945 SERTAD1Q9UHV2 236 aa10.27□□□□□ -0.77
USP40-202ENST00000409945 KIAA0586Q9BVV6 1533 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 GDF10P55107 478 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 PDE4CQ08493 712 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 NR5A1Q13285 461 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 TBCELQ5QJ74 424 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 HINFPQ9BQA5 517 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 USP3Q9Y6I4 520 aa10.26□□□□□ -0.77
USP40-202ENST00000409945 RAPGEF2Q9Y4G8 1499 aa10.25□□□□□ -0.77
USP40-202ENST00000409945 SHROOM2Q13796 1616 aa10.25□□□□□ -0.77
USP40-202ENST00000409945 EPHA4P54764 986 aa10.25□□□□□ -0.77
USP40-202ENST00000409945 PRG4Q92954 1404 aaPredicted RBP10.25□□□□□ -0.77
USP40-202ENST00000409945 MKNK1Q9BUB5 465 aa10.25□□□□□ -0.77
USP40-202ENST00000409945 ARHGEF10LQ9HCE6 1279 aa10.25□□□□□ -0.77
USP40-202ENST00000409945 RUSC2Q8N2Y8 1516 aa10.24□□□□□ -0.77
USP40-202ENST00000409945 C21orf2O43822 256 aa10.24□□□□□ -0.77
USP40-202ENST00000409945 FKBP5Q13451 457 aaPredicted RBP10.24□□□□□ -0.77
USP40-202ENST00000409945 SIRT1Q96EB6 747 aa10.24□□□□□ -0.77
USP40-202ENST00000409945 AGBL1Q96MI9 1066 aa10.24□□□□□ -0.77
USP40-202ENST00000409945 CXXC1Q9P0U4 656 aaPredicted RBP10.24□□□□□ -0.77
USP40-202ENST00000409945 SEPT3Q9UH03 358 aa10.24□□□□□ -0.77
USP40-202ENST00000409945 GNEQ9Y223 722 aaKnown RBP10.23□□□□□ -0.77
USP40-202ENST00000409945 WEE1P30291 646 aa10.23□□□□□ -0.77
USP40-202ENST00000409945 TSPAN10Q9H1Z9 355 aaPredicted RBP10.23□□□□□ -0.77
USP40-202ENST00000409945 EEA1Q15075 1411 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 CARMIL2Q6F5E8 1435 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 IL2RAP01589 272 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 INHAP05111 366 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 SMPD1P17405 629 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 MYT1Q01538 1121 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 DHX9Q08211 1270 aaKnown RBP10.22□□□□□ -0.77
USP40-202ENST00000409945 MTMR3Q13615 1198 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 FAM9AQ8IZU1 332 aaPredicted RBP10.22□□□□□ -0.77
USP40-202ENST00000409945 TOR4AQ9NXH8 423 aa10.22□□□□□ -0.77
USP40-202ENST00000409945 TMCO4Q5TGY1 634 aa10.21□□□□□ -0.78
USP40-202ENST00000409945 ANO2Q9NQ90 1003 aa10.21□□□□□ -0.78
USP40-202ENST00000409945 V9GY48 417 aaPredicted RBP10.21□□□□□ -0.78
USP40-202ENST00000409945 ZIC2O95409 532 aaPredicted RBP10.2□□□□□ -0.78
USP40-202ENST00000409945 MFAP1P55081 439 aaKnown RBP10.2□□□□□ -0.78
USP40-202ENST00000409945 TAS1R3Q7RTX0 852 aa10.2□□□□□ -0.78
USP40-202ENST00000409945 SNIP1Q8TAD8 396 aaKnown RBP10.2□□□□□ -0.78
USP40-202ENST00000409945 HPS1Q92902 700 aa10.2□□□□□ -0.78
USP40-202ENST00000409945 TIMP2P16035 220 aa10.19□□□□□ -0.78
USP40-202ENST00000409945 CCDC125Q86Z20 511 aa10.19□□□□□ -0.78
USP40-202ENST00000409945 WASF2Q9Y6W5 498 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms