RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SLC4A10Q6U841 1118 aa25.18■■□□□ 1.62
USP39-204ENST00000409766 NECTIN2Q92692 538 aa25.17■■□□□ 1.62
USP39-204ENST00000409766 DDX17Q92841 729 aaKnown RBP25.17■■□□□ 1.62
USP39-204ENST00000409766 PXDNQ92626 1479 aa25.17■■□□□ 1.62
USP39-204ENST00000409766 ERBB3P21860 1342 aa25.16■■□□□ 1.62
USP39-204ENST00000409766 ZC3H6P61129 1189 aaKnown RBP25.16■■□□□ 1.62
USP39-204ENST00000409766 EIF4A1P60842 406 aaKnown RBP25.15■■□□□ 1.62
USP39-204ENST00000409766 FKBP5Q13451 457 aaPredicted RBP25.15■■□□□ 1.62
USP39-204ENST00000409766 N4BP2Q86UW6 1770 aaPredicted RBP25.15■■□□□ 1.62
USP39-204ENST00000409766 NPHP3Q7Z494 1330 aa25.15■■□□□ 1.62
USP39-204ENST00000409766 OVOS2A0A0G2JMS6 1433 aa25.15■■□□□ 1.62
USP39-204ENST00000409766 XIRP1Q702N8 1843 aaKnown RBP25.15■■□□□ 1.62
USP39-204ENST00000409766 HDGFL1Q5TGJ6 251 aa25.14■■□□□ 1.62
USP39-204ENST00000409766 MPRIPQ6WCQ1 1025 aa25.14■■□□□ 1.62
USP39-204ENST00000409766 TEFQ10587 303 aa25.13■■□□□ 1.61
USP39-204ENST00000409766 HOXB7P09629 217 aa25.13■■□□□ 1.61
USP39-204ENST00000409766 C1orf141Q5JVX7 400 aa25.13■■□□□ 1.61
USP39-204ENST00000409766 RNMTO43148 476 aaKnown RBP25.12■■□□□ 1.61
USP39-204ENST00000409766 COL18A1P39060 1754 aa25.12■■□□□ 1.61
USP39-204ENST00000409766 TNS3Q68CZ2 1445 aa25.11■■□□□ 1.61
USP39-204ENST00000409766 PXDNLA1KZ92 1463 aa25.11■■□□□ 1.61
USP39-204ENST00000409766 CRYBG1Q9Y4K1 1723 aa25.11■■□□□ 1.61
USP39-204ENST00000409766 BTBD11A6QL63 1104 aa25.1■■□□□ 1.61
USP39-204ENST00000409766 MFAP1P55081 439 aaKnown RBP25.1■■□□□ 1.61
USP39-204ENST00000409766 KCNQ3O43525 872 aa25.1■■□□□ 1.61
USP39-204ENST00000409766 C22orf23Q9BZE7 217 aa25.09■■□□□ 1.61
USP39-204ENST00000409766 ADAMTS7Q9UKP4 1686 aa25.09■■□□□ 1.61
USP39-204ENST00000409766 ZNF335Q9H4Z2 1342 aaPredicted RBP25.09■■□□□ 1.61
USP39-204ENST00000409766 PLEKHM2Q8IWE5 1019 aa25.08■■□□□ 1.61
USP39-204ENST00000409766 SIPA1L3O60292 1781 aaPredicted RBP25.08■■□□□ 1.61
USP39-204ENST00000409766 GNAI2P04899 355 aa25.08■■□□□ 1.61
USP39-204ENST00000409766 BECN1Q14457 450 aa25.08■■□□□ 1.61
USP39-204ENST00000409766 CHMP4AQ9BY43 222 aa25.08■■□□□ 1.61
USP39-204ENST00000409766 HMMRO75330 724 aa25.07■■□□□ 1.6
USP39-204ENST00000409766 PHAXQ9H814 394 aaKnown RBP25.07■■□□□ 1.6
USP39-204ENST00000409766 GNAI3P08754 354 aa25.07■■□□□ 1.6
USP39-204ENST00000409766 SPATA31A3Q5VYP0 1347 aa25.06■■□□□ 1.6
USP39-204ENST00000409766 EIF2S2P20042 333 aaKnown RBP25.06■■□□□ 1.6
USP39-204ENST00000409766 CABLES1Q8TDN4 633 aa25.06■■□□□ 1.6
USP39-204ENST00000409766 ABCC6O95255 1503 aa25.05■■□□□ 1.6
USP39-204ENST00000409766 C16orf71Q8IYS4 520 aaPredicted RBP25.03■■□□□ 1.6
USP39-204ENST00000409766 NLRP2Q9NX02 1062 aa25.03■■□□□ 1.6
USP39-204ENST00000409766 CHPF2Q9P2E5 772 aa25.03■■□□□ 1.6
USP39-204ENST00000409766 HEG1Q9ULI3 1381 aa25.03■■□□□ 1.6
USP39-204ENST00000409766 RAPGEF4Q8WZA2 1011 aa25.03■■□□□ 1.6
USP39-204ENST00000409766 GSPT1P15170 499 aaKnown RBP25.02■■□□□ 1.6
USP39-204ENST00000409766 RTL5Q5HYW3 569 aaPredicted RBP25.02■■□□□ 1.6
USP39-204ENST00000409766 BRINP3Q76B58 766 aa25.02■■□□□ 1.6
USP39-204ENST00000409766 USP44Q9H0E7 712 aa25.02■■□□□ 1.6
USP39-204ENST00000409766 USP35Q9P2H5 1018 aa25.01■■□□□ 1.59
USP39-204ENST00000409766 CPDO75976 1380 aa25.01■■□□□ 1.59
USP39-204ENST00000409766 RBM25P49756 843 aaKnown RBP25■■□□□ 1.59
USP39-204ENST00000409766 TTC22Q5TAA0 569 aa25■■□□□ 1.59
USP39-204ENST00000409766 TBC1D9Q6ZT07 1266 aa25■■□□□ 1.59
USP39-204ENST00000409766 SCN11AQ9UI33 1791 aa25■■□□□ 1.59
USP39-204ENST00000409766 SMARCA5O60264 1052 aaPredicted RBP25■■□□□ 1.59
USP39-204ENST00000409766 TBC1D2Q9BYX2 928 aa25■■□□□ 1.59
USP39-204ENST00000409766 GIGYF1O75420 1035 aaPredicted RBP24.99■■□□□ 1.59
USP39-204ENST00000409766 OTUD7AQ8TE49 926 aaPredicted RBP24.99■■□□□ 1.59
USP39-204ENST00000409766 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.99■■□□□ 1.599e-7■□□□□ 10
USP39-204ENST00000409766 MEGF6O75095 1541 aa24.99■■□□□ 1.59
USP39-204ENST00000409766 ATP8B2P98198 1209 aa24.98■■□□□ 1.59
USP39-204ENST00000409766 CHRNA2Q15822 529 aa24.98■■□□□ 1.59
USP39-204ENST00000409766 APBB1O00213 710 aa24.98■■□□□ 1.59
USP39-204ENST00000409766 TATP17735 454 aaPredicted RBP24.98■■□□□ 1.59
USP39-204ENST00000409766 PLEKHG2Q9H7P9 1386 aa24.98■■□□□ 1.59
USP39-204ENST00000409766 DBF4Q9UBU7 674 aaPredicted RBP24.97■■□□□ 1.59
USP39-204ENST00000409766 LRRFIP2Q9Y608 721 aaKnown RBP24.97■■□□□ 1.59
USP39-204ENST00000409766 PNMA6EA0A0J9YXQ4 647 aa24.96■■□□□ 1.59
USP39-204ENST00000409766 CDC45O75419 566 aa24.96■■□□□ 1.59
USP39-204ENST00000409766 SRCIN1Q9C0H9 1055 aa24.96■■□□□ 1.59
USP39-204ENST00000409766 SPG7Q9UQ90 795 aa24.96■■□□□ 1.59
USP39-204ENST00000409766 KDM6AO15550 1401 aaPredicted RBP24.96■■□□□ 1.59
USP39-204ENST00000409766 CSB-PGBD3P0DP91 1061 aa24.96■■□□□ 1.59
USP39-204ENST00000409766 UBTFL1P0CB47 393 aaPredicted RBP24.95■■□□□ 1.58
USP39-204ENST00000409766 PHKG2P15735 406 aa24.95■■□□□ 1.58
USP39-204ENST00000409766 PI4KAP2A4QPH2 592 aa24.95■■□□□ 1.58
USP39-204ENST00000409766 PI4KAP1Q8N8J0 262 aa24.95■■□□□ 1.58
USP39-204ENST00000409766 DNAAF4Q8WXU2 420 aa24.95■■□□□ 1.58
USP39-204ENST00000409766 BCL11AQ9H165 835 aa24.95■■□□□ 1.58
USP39-204ENST00000409766 ANXA1P04083 346 aa24.94■■□□□ 1.58
USP39-204ENST00000409766 BEND3Q5T5X7 828 aa24.94■■□□□ 1.58
USP39-204ENST00000409766 ADCY9O60503 1353 aa24.94■■□□□ 1.58
USP39-204ENST00000409766 EXOC6BQ9Y2D4 811 aa24.93■■□□□ 1.58
USP39-204ENST00000409766 NFKBIBQ15653 356 aa24.93■■□□□ 1.58
USP39-204ENST00000409766 SLC52A2Q9HAB3 445 aa24.93■■□□□ 1.58
USP39-204ENST00000409766 SLAIN2Q9P270 581 aa24.93■■□□□ 1.58
USP39-204ENST00000409766 PKD1L3Q7Z443 1732 aa24.93■■□□□ 1.58
USP39-204ENST00000409766 PRAMEF22A3QJZ6 481 aa24.91■■□□□ 1.58
USP39-204ENST00000409766 IFNL2Q8IZJ0 200 aa24.91■■□□□ 1.58
USP39-204ENST00000409766 OSBPL3Q9H4L5 887 aa24.91■■□□□ 1.58
USP39-204ENST00000409766 SOS2Q07890 1332 aaPredicted RBP24.91■■□□□ 1.58
USP39-204ENST00000409766 IBTKQ9P2D0 1353 aaPredicted RBP24.91■■□□□ 1.58
USP39-204ENST00000409766 PROSER3Q2NL68 480 aa24.9■■□□□ 1.58
USP39-204ENST00000409766 ZNF790Q6PG37 636 aa24.9■■□□□ 1.58
USP39-204ENST00000409766 LRRCC1Q9C099 1032 aa24.9■■□□□ 1.58
USP39-204ENST00000409766 ANTXR1Q9H6X2 564 aa24.9■■□□□ 1.58
USP39-204ENST00000409766 SDSP20132 328 aa24.89■■□□□ 1.57
USP39-204ENST00000409766 SSH3Q8TE77 659 aa24.89■■□□□ 1.57
USP39-204ENST00000409766 NFATC2IPQ8NCF5 419 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms