RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 IQSEC3Q9UPP2 1182 aaPredicted RBP13.96□□□□□ -0.17
SNX13-202ENST00000409604 SBNO1A3KN83 1393 aa13.96□□□□□ -0.17
SNX13-202ENST00000409604 E9PCH4 1651 aa13.96□□□□□ -0.18
SNX13-202ENST00000409604 DNAJC10Q8IXB1 793 aa13.96□□□□□ -0.18
SNX13-202ENST00000409604 GZF1Q9H116 711 aaPredicted RBP13.95□□□□□ -0.18
SNX13-202ENST00000409604 SNRKQ9NRH2 765 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 PLCB2Q00722 1185 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 CHAF1AQ13111 956 aaPredicted RBP13.95□□□□□ -0.18
SNX13-202ENST00000409604 ABCF2Q9UG63 623 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 IQGAP3Q86VI3 1631 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 NKTRP30414 1462 aaKnown RBP13.95□□□□□ -0.18
SNX13-202ENST00000409604 IGHDP01880 384 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 RFC4P35249 363 aa13.95□□□□□ -0.18
SNX13-202ENST00000409604 ZNF790Q6PG37 636 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 QTRT2Q9H974 415 aaKnown RBP13.94□□□□□ -0.18
SNX13-202ENST00000409604 TFCP2L1Q9NZI6 479 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 PCDHB15Q9Y5E8 787 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 USP16Q9Y5T5 823 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 PPRC1Q5VV67 1664 aaKnown RBP13.94□□□□□ -0.18
SNX13-202ENST00000409604 PTPRMP28827 1452 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 DCAF5Q96JK2 942 aa13.94□□□□□ -0.18
SNX13-202ENST00000409604 PA2G4Q9UQ80 394 aaKnown RBP13.94□□□□□ -0.18
SNX13-202ENST00000409604 HELBQ8NG08 1087 aaPredicted RBP13.93□□□□□ -0.18
SNX13-202ENST00000409604 BOLA2Q9H3K6 86 aa13.93□□□□□ -0.18
SNX13-202ENST00000409604 LRRCC1Q9C099 1032 aa13.93□□□□□ -0.18
SNX13-202ENST00000409604 CEP126Q9P2H0 1117 aa13.93□□□□□ -0.18
SNX13-202ENST00000409604 KDM5CP41229 1560 aa13.93□□□□□ -0.18
SNX13-202ENST00000409604 ASAP1Q9ULH1 1129 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 GNPATO15228 680 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 KLHDC4Q8TBB5 520 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 USP6P35125 1406 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 METTL24Q5JXM2 366 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 PPP1R42Q7Z4L9 355 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 FAM89AQ96GI7 184 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 HYPKQ9NX55 129 aa13.92□□□□□ -0.18
SNX13-202ENST00000409604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.91□□□□□ -0.18
SNX13-202ENST00000409604 SMIM5Q71RC9 77 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 NIP7Q9Y221 180 aaKnown RBP eCLIP13.91□□□□□ -0.18
SNX13-202ENST00000409604 SBNO2Q9Y2G9 1366 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 GNL2Q13823 731 aaKnown RBP13.91□□□□□ -0.18
SNX13-202ENST00000409604 ADGRL3Q9HAR2 1447 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 SLC4A8Q2Y0W8 1093 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 HSP90AB4PQ58FF6 505 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 JAG2Q9Y219 1238 aa13.91□□□□□ -0.18
SNX13-202ENST00000409604 MYOM2P54296 1465 aa13.9□□□□□ -0.18
SNX13-202ENST00000409604 ALKQ9UM73 1620 aa13.9□□□□□ -0.18
SNX13-202ENST00000409604 CHD1LQ86WJ1 897 aa13.9□□□□□ -0.18
SNX13-202ENST00000409604 C16orf71Q8IYS4 520 aaPredicted RBP13.9□□□□□ -0.18
SNX13-202ENST00000409604 IDH1O75874 414 aaKnown RBP13.9□□□□□ -0.18
SNX13-202ENST00000409604 INO80Q9ULG1 1556 aaPredicted RBP13.9□□□□□ -0.18
SNX13-202ENST00000409604 RRP12Q5JTH9 1297 aaKnown RBP13.9□□□□□ -0.18
SNX13-202ENST00000409604 DZIP3Q86Y13 1208 aaKnown RBP13.9□□□□□ -0.18
SNX13-202ENST00000409604 ZNF622Q969S3 477 aaKnown RBP eCLIP13.9□□□□□ -0.18
SNX13-202ENST00000409604 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 LMBR1LQ6UX01 489 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 CWC27Q6UX04 472 aaKnown RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 ARHGEF10O15013 1369 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 TRIM37O94972 964 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 CT47B1P0C2W7 299 aaPredicted RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 ALDH1L2Q3SY69 923 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 MRPL50Q8N5N7 158 aaKnown RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 CCNL1Q9UK58 526 aaPredicted RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 TTC39AQ5SRH9 613 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 LDHAL6AQ6ZMR3 332 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 NBPF5PQ86XG9 351 aaPredicted RBP13.89□□□□□ -0.19
SNX13-202ENST00000409604 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
SNX13-202ENST00000409604 HSPA1LP34931 641 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 PCDH11XQ9BZA7 1347 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 PCDH11YQ9BZA8 1340 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 GOLGA6L22H0YM25 854 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 ERC2O15083 957 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 HCLS1P14317 486 aaPredicted RBP13.88□□□□□ -0.19
SNX13-202ENST00000409604 IFIT5Q13325 482 aaKnown RBP13.88□□□□□ -0.19
SNX13-202ENST00000409604 MSL1Q68DK7 614 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 ERBB3P21860 1342 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 CROCC2H7BZ55 1655 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 APBA3O96018 575 aa13.88□□□□□ -0.19
SNX13-202ENST00000409604 RBM5P52756 815 aaKnown RBP eCLIP13.88□□□□□ -0.19
SNX13-202ENST00000409604 UNC13BO14795 1591 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 PHKG2P15735 406 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 SPATA31A3Q5VYP0 1347 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 SLC52A2Q9HAB3 445 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 SPHKAPQ2M3C7 1700 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 C6orf229H3BNL8 230 aa13.87□□□□□ -0.19
SNX13-202ENST00000409604 CWC25Q9NXE8 425 aaPredicted RBP13.86□□□□□ -0.19
SNX13-202ENST00000409604 ZNF652Q9Y2D9 606 aa13.86□□□□□ -0.19
SNX13-202ENST00000409604 IGHMBP2P38935 993 aaKnown RBP13.86□□□□□ -0.19
SNX13-202ENST00000409604 PROSER3Q2NL68 480 aa13.86□□□□□ -0.19
SNX13-202ENST00000409604 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
SNX13-202ENST00000409604 CHL1O00533 1208 aa13.85□□□□□ -0.19
SNX13-202ENST00000409604 CCDC158Q5M9N0 1113 aa13.85□□□□□ -0.19
SNX13-202ENST00000409604 ADAMTS13Q76LX8 1427 aa13.85□□□□□ -0.19
SNX13-202ENST00000409604 LARP6Q9BRS8 491 aaKnown RBP13.85□□□□□ -0.19
SNX13-202ENST00000409604 NOL10Q9BSC4 688 aaKnown RBP13.85□□□□□ -0.19
SNX13-202ENST00000409604 DHX16O60231 1041 aaKnown RBP13.85□□□□□ -0.19
SNX13-202ENST00000409604 RPAP2Q8IXW5 612 aaPredicted RBP13.85□□□□□ -0.19
SNX13-202ENST00000409604 C22orf23Q9BZE7 217 aa13.85□□□□□ -0.19
SNX13-202ENST00000409604 PTPRUQ92729 1446 aa13.85□□□□□ -0.19
SNX13-202ENST00000409604 ZFYVE9O95405 1425 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms