RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TUBB8Q3ZCM7 444 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 AMOTQ4VCS5 1084 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 DNAAF4Q8WXU2 420 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 NLRP2Q9NX02 1062 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 TTC21AQ8NDW8 1320 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 IVLP07476 585 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 V9GYY5 206 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 NKTRP30414 1462 aaKnown RBP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 TIAM1Q13009 1591 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 RTEL1-TNFRSF6BF6WH68 1400 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 IKQ13123 557 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-203ENST00000409050 DYDC1Q8WWB3 177 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 FERMT1Q9BQL6 677 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 STMN4Q9H169 189 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-203ENST00000409050 TTLL5Q6EMB2 1281 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 PRXQ9BXM0 1461 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 RAD21O60216 631 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 CASQ1P31415 396 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 TMEM266Q2M3C6 531 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 C6orf163Q5TEZ5 329 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 DNAJC2Q99543 621 aaKnown RBP7.09□□□□□ -1.27
SCN1A-203ENST00000409050 ZSCAN16Q9H4T2 348 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-203ENST00000409050 SOS1Q07889 1333 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-203ENST00000409050 SLC4A2P04920 1241 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 TMEM132AQ24JP5 1023 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 CTR9Q6PD62 1173 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 TANGO6Q9C0B7 1094 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 GGNBP2Q9H3C7 697 aa7.09□□□□□ -1.27
SCN1A-203ENST00000409050 MAP2K1Q02750 393 aaPredicted RBP7.09□□□□□ -1.28
SCN1A-203ENST00000409050 LARP1Q6PKG0 1096 aaKnown RBP7.09□□□□□ -1.28
SCN1A-203ENST00000409050 DHX37Q8IY37 1157 aaKnown RBP7.08□□□□□ -1.28
SCN1A-203ENST00000409050 CCDC102AQ96A19 550 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 CTAGE1Q96RT6 745 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 RMND1Q9NWS8 449 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 A0A087WZG4 1122 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 ANAPC15P60006 121 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 TUBB2AQ13885 445 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 STX1AQ16623 288 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 PPP4R3AQ6IN85 833 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 TUBB2BQ9BVA1 445 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 ZNF652Q9Y2D9 606 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 CASTP20810 708 aaKnown RBP7.08□□□□□ -1.28
SCN1A-203ENST00000409050 ARHGAP45Q92619 1136 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 TOP1P11387 765 aaKnown RBP7.08□□□□□ -1.28
SCN1A-203ENST00000409050 TTF1Q15361 905 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-203ENST00000409050 RBM27Q9P2N5 1060 aaKnown RBP7.08□□□□□ -1.28
SCN1A-203ENST00000409050 HMGXB3Q12766 1538 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 CFTRP13569 1480 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 CFAP100Q494V2 611 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 USP37Q86T82 979 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 LRRC45Q96CN5 670 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 MPHOSPH8Q99549 860 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 LIMCH1Q9UPQ0 1083 aa7.08□□□□□ -1.28
SCN1A-203ENST00000409050 SREK1Q8WXA9 508 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 JAKMIP1Q96N16 626 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 TEX13AQ9BXU3 409 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 NSRP1Q9H0G5 558 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 TTC21BQ7Z4L5 1316 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 HMOX1P09601 288 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 IGHMBP2P38935 993 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 PPP1R2P41236 205 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 CEP128Q6ZU80 1094 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 PUS7Q96PZ0 661 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 CCDC175P0C221 793 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 CABP4P57796 275 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 BMP2KLQ5H9B9 411 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 TTC12Q9H892 705 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 MX1P20591 662 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 ATL3Q6DD88 541 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 TMOD2Q9NZR1 351 aa7.07□□□□□ -1.28
SCN1A-203ENST00000409050 SEC63Q9UGP8 760 aaKnown RBP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.07□□□□□ -1.28
SCN1A-203ENST00000409050 KLHL40Q2TBA0 621 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 LRPPRCP42704 1394 aaKnown RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 BRPF1P55201 1214 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 AACSQ86V21 672 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 DCAF8L1A6NGE4 600 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 IFIT1P09914 478 aaKnown RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 ABTB2Q8N961 1025 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 TOP2BQ02880 1626 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 BAG4O95429 457 aaKnown RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 STARD3NLO95772 234 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 TDO2P48775 406 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 TMTC2Q8N394 836 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 TTC14Q96N46 770 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 RALGAPBQ86X10 1494 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 NEBLO76041 1014 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 KIF5BP33176 963 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 AIMP1Q12904 312 aaKnown RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 NUTM2DQ5VT03 806 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 ZNF530Q6P9A1 599 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 STK11IPQ8N1F8 1099 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 CTCFLQ8NI51 663 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 FBXW7Q969H0 707 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 EVI5LQ96CN4 794 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 CABP2Q9NPB3 220 aa7.06□□□□□ -1.28
SCN1A-203ENST00000409050 LRRFIP2Q9Y608 721 aaKnown RBP7.06□□□□□ -1.28
SCN1A-203ENST00000409050 MSH5O43196 834 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 SRGAP3O43295 1099 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms