RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 PRIM1P49642 420 aaKnown RBP16.07■□□□□ 0.16
LINC00339-201ENST00000404210 GNAI1P63096 354 aa16.07■□□□□ 0.16
LINC00339-201ENST00000404210 FAM182BQ5T319 152 aa16.07■□□□□ 0.16
LINC00339-201ENST00000404210 IFT57Q9NWB7 429 aa16.07■□□□□ 0.16
LINC00339-201ENST00000404210 CHL1O00533 1208 aa16.06■□□□□ 0.16
LINC00339-201ENST00000404210 ACSBG1Q96GR2 724 aa16.06■□□□□ 0.16
LINC00339-201ENST00000404210 TMOD3Q9NYL9 352 aa16.06■□□□□ 0.16
LINC00339-201ENST00000404210 ITGB4P16144 1822 aa16.05■□□□□ 0.16
LINC00339-201ENST00000404210 BTBD11A6QL63 1104 aa16.05■□□□□ 0.16
LINC00339-201ENST00000404210 SLFN5Q08AF3 891 aa16.05■□□□□ 0.16
LINC00339-201ENST00000404210 TOGARAM1Q9Y4F4 1720 aa16.05■□□□□ 0.16
LINC00339-201ENST00000404210 MRC1P22897 1456 aa16.04■□□□□ 0.16
LINC00339-201ENST00000404210 SBF2Q86WG5 1849 aa16.04■□□□□ 0.16
LINC00339-201ENST00000404210 E9PSI1 815 aa16.04■□□□□ 0.16
LINC00339-201ENST00000404210 TRMT2AQ8IZ69 625 aaKnown RBP16.04■□□□□ 0.16
LINC00339-201ENST00000404210 PIGBQ92521 554 aa16.04■□□□□ 0.16
LINC00339-201ENST00000404210 SPINK5Q9NQ38 1064 aaPredicted RBP16.04■□□□□ 0.16
LINC00339-201ENST00000404210 LAS1LQ9Y4W2 734 aaKnown RBP16.04■□□□□ 0.16
LINC00339-201ENST00000404210 SIPA1L3O60292 1781 aaPredicted RBP16.04■□□□□ 0.16
LINC00339-201ENST00000404210 KCNQ2O43526 872 aa16.03■□□□□ 0.16
LINC00339-201ENST00000404210 SYTL4Q96C24 671 aaPredicted RBP16.03■□□□□ 0.16
LINC00339-201ENST00000404210 CDCA7LQ96GN5 454 aa16.03■□□□□ 0.16
LINC00339-201ENST00000404210 BCL11BQ9C0K0 894 aaPredicted RBP16.03■□□□□ 0.16
LINC00339-201ENST00000404210 MYH16Q9H6N6 1097 aa16.03■□□□□ 0.16
LINC00339-201ENST00000404210 DOT1LQ8TEK3 1739 aa16.02■□□□□ 0.16
LINC00339-201ENST00000404210 MIS18AQ9NYP9 233 aa16.02■□□□□ 0.16
LINC00339-201ENST00000404210 TSPYL4Q9UJ04 414 aa16.02■□□□□ 0.16
LINC00339-201ENST00000404210 ZNF790Q6PG37 636 aa16.01■□□□□ 0.15
LINC00339-201ENST00000404210 MBIPQ9NS73 344 aa16.01■□□□□ 0.15
LINC00339-201ENST00000404210 ATG3Q9NT62 314 aa16■□□□□ 0.15
LINC00339-201ENST00000404210 NHSQ6T4R5 1651 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 TRIM37O94972 964 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 SLC39A6Q13433 755 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 DUSP27Q5VZP5 1158 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 TTC5Q8N0Z6 440 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 SMARCC1Q92922 1105 aaPredicted RBP15.99■□□□□ 0.15
LINC00339-201ENST00000404210 ASAP1Q9ULH1 1129 aa15.99■□□□□ 0.15
LINC00339-201ENST00000404210 KCNQ3O43525 872 aa15.98■□□□□ 0.15
LINC00339-201ENST00000404210 EIF4A1P60842 406 aaKnown RBP15.98■□□□□ 0.15
LINC00339-201ENST00000404210 TSR2Q969E8 191 aaKnown RBP15.98■□□□□ 0.15
LINC00339-201ENST00000404210 KDM3BQ7LBC6 1761 aa15.98■□□□□ 0.15
LINC00339-201ENST00000404210 FANCIQ9NVI1 1328 aa15.97■□□□□ 0.15
LINC00339-201ENST00000404210 PTF1AQ7RTS3 328 aa15.97■□□□□ 0.15
LINC00339-201ENST00000404210 FMNL2Q96PY5 1086 aa15.96■□□□□ 0.15
LINC00339-201ENST00000404210 KCNA4P22459 653 aa15.95■□□□□ 0.14
LINC00339-201ENST00000404210 VSIG10Q8N0Z9 540 aa15.95■□□□□ 0.14
LINC00339-201ENST00000404210 BTAF1O14981 1849 aa15.95■□□□□ 0.14
LINC00339-201ENST00000404210 HEG1Q9ULI3 1381 aa15.95■□□□□ 0.14
LINC00339-201ENST00000404210 PAPPAQ13219 1627 aa15.94■□□□□ 0.14
LINC00339-201ENST00000404210 PLSCR1O15162 318 aa15.94■□□□□ 0.14
LINC00339-201ENST00000404210 EXOSC9Q06265 439 aaKnown RBP15.94■□□□□ 0.14
LINC00339-201ENST00000404210 CCDC125Q86Z20 511 aa15.94■□□□□ 0.14
LINC00339-201ENST00000404210 ZNF496Q96IT1 587 aaPredicted RBP15.94■□□□□ 0.14
LINC00339-201ENST00000404210 SOS1Q07889 1333 aaPredicted RBP15.94■□□□□ 0.14
LINC00339-201ENST00000404210 GIGYF1O75420 1035 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-201ENST00000404210 HOXB7P09629 217 aa15.93■□□□□ 0.14
LINC00339-201ENST00000404210 C8orf58Q8NAV2 365 aa15.93■□□□□ 0.14
LINC00339-201ENST00000404210 RBM42Q9BTD8 480 aaKnown RBP15.93■□□□□ 0.14
LINC00339-201ENST00000404210 UBR2Q8IWV8 1755 aa15.92■□□□□ 0.14
LINC00339-201ENST00000404210 PALLDQ8WX93 1383 aa15.92■□□□□ 0.14
LINC00339-201ENST00000404210 PTCD1O75127 700 aaKnown RBP15.92■□□□□ 0.14
LINC00339-201ENST00000404210 APBA3O96018 575 aa15.92■□□□□ 0.14
LINC00339-201ENST00000404210 SNRPA1P09661 255 aaKnown RBP15.92■□□□□ 0.14
LINC00339-201ENST00000404210 CT47B1P0C2W7 299 aaPredicted RBP15.92■□□□□ 0.14
LINC00339-201ENST00000404210 TEX13AQ9BXU3 409 aaPredicted RBP15.92■□□□□ 0.14
LINC00339-201ENST00000404210 CHMP4AQ9BY43 222 aa15.92■□□□□ 0.14
LINC00339-201ENST00000404210 KCPQ6ZWJ8 1503 aa15.91■□□□□ 0.14
LINC00339-201ENST00000404210 LOC102724428A0A0B4J2F2 783 aa15.91■□□□□ 0.14
LINC00339-201ENST00000404210 VAMP4O75379 141 aa15.91■□□□□ 0.14
LINC00339-201ENST00000404210 HMGB2P26583 209 aaKnown RBP15.91■□□□□ 0.14
LINC00339-201ENST00000404210 SIK1P57059 783 aa15.91■□□□□ 0.14
LINC00339-201ENST00000404210 TSPYL6Q8N831 410 aa15.91■□□□□ 0.14
LINC00339-201ENST00000404210 ELL2O00472 640 aaPredicted RBP15.9■□□□□ 0.14
LINC00339-201ENST00000404210 SF3B2Q13435 895 aaKnown RBP15.9■□□□□ 0.14
LINC00339-201ENST00000404210 KRT24Q2M2I5 525 aa15.9■□□□□ 0.14
LINC00339-201ENST00000404210 TWISTNBQ3B726 338 aaPredicted RBP15.9■□□□□ 0.14
LINC00339-201ENST00000404210 ATP6V1AP38606 617 aa15.89■□□□□ 0.13
LINC00339-201ENST00000404210 ZNF428Q96B54 188 aa15.89■□□□□ 0.13
LINC00339-201ENST00000404210 SLC4A9Q96Q91 983 aa15.89■□□□□ 0.13
LINC00339-201ENST00000404210 USP16Q9Y5T5 823 aa15.89■□□□□ 0.13
LINC00339-201ENST00000404210 LY75O60449 1722 aa15.88■□□□□ 0.13
LINC00339-201ENST00000404210 ZNF831Q5JPB2 1677 aa15.88■□□□□ 0.13
LINC00339-201ENST00000404210 TNS1Q9HBL0 1735 aaKnown RBP15.88■□□□□ 0.13
LINC00339-201ENST00000404210 PRAMEF22A3QJZ6 481 aa15.87■□□□□ 0.13
LINC00339-201ENST00000404210 SLC27A3Q5K4L6 730 aa15.87■□□□□ 0.13
LINC00339-201ENST00000404210 ILDR2Q71H61 639 aa15.87■□□□□ 0.13
LINC00339-201ENST00000404210 DNAJC10Q8IXB1 793 aa15.87■□□□□ 0.13
LINC00339-201ENST00000404210 STARD3NLO95772 234 aa15.86■□□□□ 0.13
LINC00339-201ENST00000404210 BAG6P46379 1132 aa15.86■□□□□ 0.13
LINC00339-201ENST00000404210 TXNRD1Q16881 649 aa15.86■□□□□ 0.13
LINC00339-201ENST00000404210 CCDC30Q5VVM6 783 aa15.86■□□□□ 0.13
LINC00339-201ENST00000404210 PROM2Q8N271 834 aa15.86■□□□□ 0.13
LINC00339-201ENST00000404210 CCNL1Q9UK58 526 aaPredicted RBP15.86■□□□□ 0.13
LINC00339-201ENST00000404210 EIF2S2P20042 333 aaKnown RBP15.85■□□□□ 0.13
LINC00339-201ENST00000404210 ITPK1Q13572 414 aa15.85■□□□□ 0.13
LINC00339-201ENST00000404210 UPF1Q92900 1129 aaKnown RBP eCLIP15.85■□□□□ 0.13
LINC00339-201ENST00000404210 CAMKK2Q96RR4 588 aa15.85■□□□□ 0.13
LINC00339-201ENST00000404210 CICQ96RK0 1608 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-201ENST00000404210 CYP19A1P11511 503 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-201ENST00000404210 ALDH1L2Q3SY69 923 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms