RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KRT27Q7Z3Y8 459 aa23.47■■□□□ 1.35
SDC1-203ENST00000403076 SYTL4Q96C24 671 aaPredicted RBP23.47■■□□□ 1.35
SDC1-203ENST00000403076 MBIPQ9NS73 344 aa23.46■■□□□ 1.35
SDC1-203ENST00000403076 FAM182BQ5T319 152 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 DUSP27Q5VZP5 1158 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 KAT6BQ8WYB5 2073 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 ACSBG1Q96GR2 724 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 TMOD3Q9NYL9 352 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 ADAMTS7Q9UKP4 1686 aa23.45■■□□□ 1.34
SDC1-203ENST00000403076 VIRMAQ69YN4 1812 aaKnown RBP23.45■■□□□ 1.34
SDC1-203ENST00000403076 FANCIQ9NVI1 1328 aa23.44■■□□□ 1.34
SDC1-203ENST00000403076 TRMT2AQ8IZ69 625 aaKnown RBP23.44■■□□□ 1.34
SDC1-203ENST00000403076 BABAM1Q9NWV8 329 aa23.44■■□□□ 1.34
SDC1-203ENST00000403076 PRIM1P49642 420 aaKnown RBP23.43■■□□□ 1.34
SDC1-203ENST00000403076 RGS12O14924 1447 aa23.41■■□□□ 1.34
SDC1-203ENST00000403076 TTC5Q8N0Z6 440 aa23.4■■□□□ 1.34
SDC1-203ENST00000403076 MRC1P22897 1456 aa23.4■■□□□ 1.34
SDC1-203ENST00000403076 EXOSC9Q06265 439 aaKnown RBP23.39■■□□□ 1.34
SDC1-203ENST00000403076 SLC39A6Q13433 755 aa23.39■■□□□ 1.34
SDC1-203ENST00000403076 PIGBQ92521 554 aa23.39■■□□□ 1.34
SDC1-203ENST00000403076 FAM196AQ6ZSG2 479 aa23.38■■□□□ 1.33
SDC1-203ENST00000403076 TOGARAM1Q9Y4F4 1720 aa23.38■■□□□ 1.33
SDC1-203ENST00000403076 BRWD3Q6RI45 1802 aa23.38■■□□□ 1.33
SDC1-203ENST00000403076 KCNQ3O43525 872 aa23.37■■□□□ 1.33
SDC1-203ENST00000403076 ZNF790Q6PG37 636 aa23.37■■□□□ 1.33
SDC1-203ENST00000403076 DOT1LQ8TEK3 1739 aa23.37■■□□□ 1.33
SDC1-203ENST00000403076 KCNQ2O43526 872 aa23.36■■□□□ 1.33
SDC1-203ENST00000403076 SIPA1L3O60292 1781 aaPredicted RBP23.36■■□□□ 1.33
SDC1-203ENST00000403076 BCL9O00512 1426 aa23.35■■□□□ 1.33
SDC1-203ENST00000403076 ELL2O00472 640 aaPredicted RBP23.35■■□□□ 1.33
SDC1-203ENST00000403076 EIF4A1P60842 406 aaKnown RBP23.34■■□□□ 1.33
SDC1-203ENST00000403076 ITGB4P16144 1822 aa23.33■■□□□ 1.33
SDC1-203ENST00000403076 C8orf58Q8NAV2 365 aa23.33■■□□□ 1.33
SDC1-203ENST00000403076 KRT24Q2M2I5 525 aa23.33■■□□□ 1.32
SDC1-203ENST00000403076 ASAP1Q9ULH1 1129 aa23.33■■□□□ 1.32
SDC1-203ENST00000403076 TWISTNBQ3B726 338 aaPredicted RBP23.32■■□□□ 1.32
SDC1-203ENST00000403076 FMNL2Q96PY5 1086 aa23.32■■□□□ 1.32
SDC1-203ENST00000403076 KDM3BQ7LBC6 1761 aa23.31■■□□□ 1.32
SDC1-203ENST00000403076 PTCD1O75127 700 aaKnown RBP23.31■■□□□ 1.32
SDC1-203ENST00000403076 TSPYL6Q8N831 410 aa23.31■■□□□ 1.32
SDC1-203ENST00000403076 ATG3Q9NT62 314 aa23.31■■□□□ 1.32
SDC1-203ENST00000403076 CT47B1P0C2W7 299 aaPredicted RBP23.3■■□□□ 1.32
SDC1-203ENST00000403076 ZNF496Q96IT1 587 aaPredicted RBP23.3■■□□□ 1.32
SDC1-203ENST00000403076 RBM42Q9BTD8 480 aaKnown RBP23.29■■□□□ 1.32
SDC1-203ENST00000403076 SMARCC1Q92922 1105 aaPredicted RBP23.28■■□□□ 1.32
SDC1-203ENST00000403076 BCL11BQ9C0K0 894 aaPredicted RBP23.28■■□□□ 1.32
SDC1-203ENST00000403076 TRIM37O94972 964 aa23.28■■□□□ 1.32
SDC1-203ENST00000403076 PTF1AQ7RTS3 328 aa23.28■■□□□ 1.32
SDC1-203ENST00000403076 RCAN3Q9UKA8 241 aa23.28■■□□□ 1.32
SDC1-203ENST00000403076 VAMP4O75379 141 aa23.27■■□□□ 1.32
SDC1-203ENST00000403076 NHSQ6T4R5 1651 aa23.26■■□□□ 1.31
SDC1-203ENST00000403076 SNRPA1P09661 255 aaKnown RBP23.26■■□□□ 1.31
SDC1-203ENST00000403076 GIGYF1O75420 1035 aaPredicted RBP23.25■■□□□ 1.31
SDC1-203ENST00000403076 EIF2S2P20042 333 aaKnown RBP23.24■■□□□ 1.31
SDC1-203ENST00000403076 SOS1Q07889 1333 aaPredicted RBP23.24■■□□□ 1.31
SDC1-203ENST00000403076 SBF2Q86WG5 1849 aa23.24■■□□□ 1.31
SDC1-203ENST00000403076 PALLDQ8WX93 1383 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 HEG1Q9ULI3 1381 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 HOXB7P09629 217 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 ILDR2Q71H61 639 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 NECTIN2Q92692 538 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 ZNF428Q96B54 188 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 CHMP4AQ9BY43 222 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 PAPPAQ13219 1627 aa23.23■■□□□ 1.31
SDC1-203ENST00000403076 PRAMEF22A3QJZ6 481 aa23.22■■□□□ 1.31
SDC1-203ENST00000403076 TCERG1O14776 1098 aaKnown RBP23.22■■□□□ 1.31
SDC1-203ENST00000403076 RARSP54136 660 aaKnown RBP23.22■■□□□ 1.31
SDC1-203ENST00000403076 HDGFL1Q5TGJ6 251 aa23.22■■□□□ 1.31
SDC1-203ENST00000403076 KCPQ6ZWJ8 1503 aa23.21■■□□□ 1.31
SDC1-203ENST00000403076 CCDC30Q5VVM6 783 aa23.2■■□□□ 1.3
SDC1-203ENST00000403076 VSIG10Q8N0Z9 540 aa23.2■■□□□ 1.3
SDC1-203ENST00000403076 BTAF1O14981 1849 aa23.2■■□□□ 1.3
SDC1-203ENST00000403076 LOC102724428A0A0B4J2F2 783 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 SIK1P57059 783 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 SSH1Q8WYL5 1049 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 BCL2L13Q9BXK5 485 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 STK31Q9BXU1 1019 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 TEX13AQ9BXU3 409 aaPredicted RBP23.19■■□□□ 1.3
SDC1-203ENST00000403076 SMC4Q9NTJ3 1288 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 UBR2Q8IWV8 1755 aa23.19■■□□□ 1.3
SDC1-203ENST00000403076 ATP6V1AP38606 617 aa23.18■■□□□ 1.3
SDC1-203ENST00000403076 ALDH1L2Q3SY69 923 aa23.18■■□□□ 1.3
SDC1-203ENST00000403076 USP16Q9Y5T5 823 aa23.18■■□□□ 1.3
SDC1-203ENST00000403076 DNAJC10Q8IXB1 793 aa23.18■■□□□ 1.3
SDC1-203ENST00000403076 BCAR3O75815 825 aa23.17■■□□□ 1.3
SDC1-203ENST00000403076 APBA3O96018 575 aa23.17■■□□□ 1.3
SDC1-203ENST00000403076 SLC4A9Q96Q91 983 aa23.17■■□□□ 1.3
SDC1-203ENST00000403076 SUPT16HQ9Y5B9 1047 aaKnown RBP23.16■■□□□ 1.3
SDC1-203ENST00000403076 STARD3NLO95772 234 aa23.15■■□□□ 1.3
SDC1-203ENST00000403076 SLC4A2P04920 1241 aa23.13■■□□□ 1.29
SDC1-203ENST00000403076 CCNL1Q9UK58 526 aaPredicted RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 CANXP27824 592 aaKnown RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 SF3B2Q13435 895 aaKnown RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 MRPL50Q8N5N7 158 aaKnown RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 FRAT1Q92837 279 aaPredicted RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 CHPF2Q9P2E5 772 aa23.13■■□□□ 1.29
SDC1-203ENST00000403076 DBF4Q9UBU7 674 aaPredicted RBP23.13■■□□□ 1.29
SDC1-203ENST00000403076 C5P01031 1676 aa23.12■■□□□ 1.29
SDC1-203ENST00000403076 KCNQ4P56696 695 aa23.12■■□□□ 1.29
SDC1-203ENST00000403076 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms