RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 CABP4P57796 275 aa27.37■■□□□ 1.97
CPNE1-204ENST00000397443 BCL2L13Q9BXK5 485 aa27.37■■□□□ 1.97
CPNE1-204ENST00000397443 GLI3P10071 1580 aa27.37■■□□□ 1.97
CPNE1-204ENST00000397443 KCNQ3O43525 872 aa27.36■■□□□ 1.97
CPNE1-204ENST00000397443 NKX1-1Q15270 411 aaPredicted RBP27.36■■□□□ 1.97
CPNE1-204ENST00000397443 BCAR3O75815 825 aa27.35■■□□□ 1.97
CPNE1-204ENST00000397443 IRX6P78412 446 aaPredicted RBP27.35■■□□□ 1.97
CPNE1-204ENST00000397443 TWISTNBQ3B726 338 aaPredicted RBP27.35■■□□□ 1.97
CPNE1-204ENST00000397443 SLC39A6Q13433 755 aa27.33■■□□□ 1.97
CPNE1-204ENST00000397443 RARSP54136 660 aaKnown RBP27.33■■□□□ 1.97
CPNE1-204ENST00000397443 MARCH10Q8NA82 808 aaPredicted RBP27.33■■□□□ 1.97
CPNE1-204ENST00000397443 SIPA1L3O60292 1781 aaPredicted RBP27.33■■□□□ 1.97
CPNE1-204ENST00000397443 PLIN1O60240 522 aa27.32■■□□□ 1.96
CPNE1-204ENST00000397443 BABAM1Q9NWV8 329 aa27.32■■□□□ 1.96
CPNE1-204ENST00000397443 TCERG1O14776 1098 aaKnown RBP27.31■■□□□ 1.96
CPNE1-204ENST00000397443 VAMP4O75379 141 aa27.31■■□□□ 1.96
CPNE1-204ENST00000397443 TOGARAM1Q9Y4F4 1720 aa27.3■■□□□ 1.96
CPNE1-204ENST00000397443 ERVV-2B6SEH9 535 aa27.3■■□□□ 1.96
CPNE1-204ENST00000397443 CT47B1P0C2W7 299 aaPredicted RBP27.3■■□□□ 1.96
CPNE1-204ENST00000397443 MRC1P22897 1456 aa27.3■■□□□ 1.96
CPNE1-204ENST00000397443 SYTL4Q96C24 671 aaPredicted RBP27.29■■□□□ 1.96
CPNE1-204ENST00000397443 GTF3C3Q9Y5Q9 886 aa27.29■■□□□ 1.96
CPNE1-204ENST00000397443 KDM3BQ7LBC6 1761 aa27.29■■□□□ 1.96
CPNE1-204ENST00000397443 NEFLP07196 543 aa27.29■■□□□ 1.96
CPNE1-204ENST00000397443 RRP1P56182 461 aaKnown RBP27.29■■□□□ 1.96
CPNE1-204ENST00000397443 ZNF772Q68DY9 489 aaPredicted RBP27.29■■□□□ 1.96
CPNE1-204ENST00000397443 SMC4Q9NTJ3 1288 aa27.28■■□□□ 1.96
CPNE1-204ENST00000397443 EIF4A1P60842 406 aaKnown RBP27.28■■□□□ 1.96
CPNE1-204ENST00000397443 SSH1Q8WYL5 1049 aa27.28■■□□□ 1.96
CPNE1-204ENST00000397443 TMOD3Q9NYL9 352 aa27.28■■□□□ 1.96
CPNE1-204ENST00000397443 ZNF790Q6PG37 636 aa27.27■■□□□ 1.96
CPNE1-204ENST00000397443 ACSBG1Q96GR2 724 aa27.27■■□□□ 1.96
CPNE1-204ENST00000397443 THSD7AQ9UPZ6 1657 aa27.27■■□□□ 1.96
CPNE1-204ENST00000397443 SEPT12Q8IYM1 358 aa27.26■■□□□ 1.95
CPNE1-204ENST00000397443 FAM182BQ5T319 152 aa27.26■■□□□ 1.95
CPNE1-204ENST00000397443 TTC5Q8N0Z6 440 aa27.26■■□□□ 1.95
CPNE1-204ENST00000397443 NECTIN2Q92692 538 aa27.26■■□□□ 1.95
CPNE1-204ENST00000397443 FRAT1Q92837 279 aaPredicted RBP27.26■■□□□ 1.95
CPNE1-204ENST00000397443 RNF123Q5XPI4 1314 aa27.25■■□□□ 1.95
CPNE1-204ENST00000397443 FKBP8Q14318 412 aa27.24■■□□□ 1.95
CPNE1-204ENST00000397443 PRIM1P49642 420 aaKnown RBP27.24■■□□□ 1.95
CPNE1-204ENST00000397443 CANXP27824 592 aaKnown RBP27.23■■□□□ 1.95
CPNE1-204ENST00000397443 PIGBQ92521 554 aa27.23■■□□□ 1.95
CPNE1-204ENST00000397443 DOT1LQ8TEK3 1739 aa27.22■■□□□ 1.95
CPNE1-204ENST00000397443 ITGB4P16144 1822 aa27.22■■□□□ 1.95
CPNE1-204ENST00000397443 ONECUT3O60422 494 aaPredicted RBP27.21■■□□□ 1.95
CPNE1-204ENST00000397443 EIF2S2P20042 333 aaKnown RBP27.2■■□□□ 1.95
CPNE1-204ENST00000397443 ZNF496Q96IT1 587 aaPredicted RBP27.2■■□□□ 1.95
CPNE1-204ENST00000397443 PRAMEF22A3QJZ6 481 aa27.2■■□□□ 1.94
CPNE1-204ENST00000397443 RBM6P78332 1123 aaKnown RBP27.19■■□□□ 1.94
CPNE1-204ENST00000397443 ALDH1L2Q3SY69 923 aa27.19■■□□□ 1.94
CPNE1-204ENST00000397443 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.19■■□□□ 1.94
CPNE1-204ENST00000397443 ZNF428Q96B54 188 aa27.19■■□□□ 1.94
CPNE1-204ENST00000397443 PTCD1O75127 700 aaKnown RBP27.18■■□□□ 1.94
CPNE1-204ENST00000397443 ASAP1Q9ULH1 1129 aa27.18■■□□□ 1.94
CPNE1-204ENST00000397443 C20orf194Q5TEA3 1177 aa27.17■■□□□ 1.94
CPNE1-204ENST00000397443 RGS17Q9UGC6 210 aaPredicted RBP27.17■■□□□ 1.94
CPNE1-204ENST00000397443 GIGYF1O75420 1035 aaPredicted RBP27.16■■□□□ 1.94
CPNE1-204ENST00000397443 HDGFL1Q5TGJ6 251 aa27.16■■□□□ 1.94
CPNE1-204ENST00000397443 BCL9O00512 1426 aa27.16■■□□□ 1.94
CPNE1-204ENST00000397443 KCNQ2O43526 872 aa27.16■■□□□ 1.94
CPNE1-204ENST00000397443 MRPL50Q8N5N7 158 aaKnown RBP27.16■■□□□ 1.94
CPNE1-204ENST00000397443 FMNL2Q96PY5 1086 aa27.16■■□□□ 1.94
CPNE1-204ENST00000397443 NOB1Q9ULX3 412 aaKnown RBP27.16■■□□□ 1.94
CPNE1-204ENST00000397443 RXRBP28702 533 aa27.14■■□□□ 1.93
CPNE1-204ENST00000397443 ATG3Q9NT62 314 aa27.14■■□□□ 1.93
CPNE1-204ENST00000397443 TNNQ9UQP3 1299 aa27.14■■□□□ 1.93
CPNE1-204ENST00000397443 HEG1Q9ULI3 1381 aa27.13■■□□□ 1.93
CPNE1-204ENST00000397443 SLC4A2P04920 1241 aa27.13■■□□□ 1.93
CPNE1-204ENST00000397443 CCDC30Q5VVM6 783 aa27.13■■□□□ 1.93
CPNE1-204ENST00000397443 CLUAP1Q96AJ1 413 aa27.12■■□□□ 1.93
CPNE1-204ENST00000397443 STK31Q9BXU1 1019 aa27.12■■□□□ 1.93
CPNE1-204ENST00000397443 PAPPAQ13219 1627 aa27.12■■□□□ 1.93
CPNE1-204ENST00000397443 POTEAQ6S8J7 498 aa27.12■■□□□ 1.93
CPNE1-204ENST00000397443 KIF16BQ96L93 1317 aa27.11■■□□□ 1.93
CPNE1-204ENST00000397443 ILDR1Q86SU0 546 aaPredicted RBP27.11■■□□□ 1.93
CPNE1-204ENST00000397443 RBM42Q9BTD8 480 aaKnown RBP27.11■■□□□ 1.93
CPNE1-204ENST00000397443 BRWD3Q6RI45 1802 aa27.11■■□□□ 1.93
CPNE1-204ENST00000397443 SOS1Q07889 1333 aaPredicted RBP27.11■■□□□ 1.93
CPNE1-204ENST00000397443 HOXB7P09629 217 aa27.1■■□□□ 1.93
CPNE1-204ENST00000397443 SNRPA1P09661 255 aaKnown RBP27.1■■□□□ 1.93
CPNE1-204ENST00000397443 ZKSCAN2Q63HK3 967 aa27.1■■□□□ 1.93
CPNE1-204ENST00000397443 C5P01031 1676 aa27.1■■□□□ 1.93
CPNE1-204ENST00000397443 KCPQ6ZWJ8 1503 aa27.1■■□□□ 1.93
CPNE1-204ENST00000397443 PTF1AQ7RTS3 328 aa27.09■■□□□ 1.93
CPNE1-204ENST00000397443 KRT27Q7Z3Y8 459 aa27.09■■□□□ 1.93
CPNE1-204ENST00000397443 UBR2Q8IWV8 1755 aa27.09■■□□□ 1.93
CPNE1-204ENST00000397443 PANK1Q8TE04 598 aa27.08■■□□□ 1.93
CPNE1-204ENST00000397443 CHPF2Q9P2E5 772 aa27.08■■□□□ 1.93
CPNE1-204ENST00000397443 USP16Q9Y5T5 823 aa27.08■■□□□ 1.93
CPNE1-204ENST00000397443 ANXA1P04083 346 aa27.08■■□□□ 1.93
CPNE1-204ENST00000397443 EP400Q96L91 3159 aa27.06■■□□□ 1.92
CPNE1-204ENST00000397443 TRIM27P14373 513 aa27.06■■□□□ 1.92
CPNE1-204ENST00000397443 G2E3Q7L622 706 aa27.06■■□□□ 1.92
CPNE1-204ENST00000397443 IPO8O15397 1037 aaKnown RBP27.06■■□□□ 1.92
CPNE1-204ENST00000397443 BRPF1P55201 1214 aaPredicted RBP27.06■■□□□ 1.92
CPNE1-204ENST00000397443 ATF7IPQ6VMQ6 1270 aa27.06■■□□□ 1.92
CPNE1-204ENST00000397443 CRBNQ96SW2 442 aa27.06■■□□□ 1.92
CPNE1-204ENST00000397443 FTSJ3Q8IY81 847 aaKnown RBP27.05■■□□□ 1.92
CPNE1-204ENST00000397443 RLBP1P12271 317 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms