RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 IMMTQ16891 758 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 ANKRD18AQ8IVF6 992 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 CCDC148Q8NFR7 591 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 SUPT6HQ7KZ85 1726 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 MCM5P33992 734 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 C20orf194Q5TEA3 1177 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 TRERF1Q96PN7 1200 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 PRG4Q92954 1404 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 SHTN1A0MZ66 631 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 EIF5P55010 431 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 SEPT7Q16181 437 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 KIAA1328Q86T90 577 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 MPHOSPH8Q99549 860 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 PAIP2Q9BPZ3 127 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 ZHX3Q9H4I2 956 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 U3KPZ7 1027 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 CTAGE5O15320 804 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 NUTM1Q86Y26 1132 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 TNPO1Q92973 898 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 DHX29Q7Z478 1369 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 TDO2P48775 406 aa11.97□□□□□ -0.49
LIMCH1-203ENST00000396595 CRACR2AQ9BSW2 395 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 NEMFO60524 1076 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 SSFA2P28290 1259 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 TAF4BQ92750 862 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 TIGD1Q96MW7 591 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 MYL6BP14649 208 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 CAMK4Q16566 473 aa11.96□□□□□ -0.49
LIMCH1-203ENST00000396595 FAM193AP78312 1265 aa11.96□□□□□ -0.5
LIMCH1-203ENST00000396595 DUSP27Q5VZP5 1158 aa11.96□□□□□ -0.5
LIMCH1-203ENST00000396595 BTBD11A6QL63 1104 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 RRS1Q15050 365 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 ENOX2Q16206 610 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 PRPF40BQ6NWY9 871 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 NF2P35240 595 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 TMCO5BA8MYB1 307 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 PLCD3Q8N3E9 789 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 DDX19AQ9NUU7 478 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 GNAT3A8MTJ3 354 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 TMEM132AQ24JP5 1023 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 MAP9Q49MG5 647 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 LIMCH1Q9UPQ0 1083 aa11.95□□□□□ -0.5
LIMCH1-203ENST00000396595 SPATA24Q86W54 205 aa11.94□□□□□ -0.5
LIMCH1-203ENST00000396595 ZNF397Q8NF99 534 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-203ENST00000396595 XPCQ01831 940 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-203ENST00000396595 TAX1BP1Q86VP1 789 aa11.94□□□□□ -0.5
LIMCH1-203ENST00000396595 KIF5CO60282 957 aa11.94□□□□□ -0.5
LIMCH1-203ENST00000396595 SETSIPP0DME0 302 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 MCM3P25205 808 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 CLIP2Q9UDT6 1046 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 ATP2B2Q01814 1243 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 PROSER2Q86WR7 435 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 USP25Q9UHP3 1055 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 CCDC61Q9Y6R9 512 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 SMARCA5O60264 1052 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 URI1O94763 535 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 SSBP05455 408 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 TOP1P11387 765 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 BMP2KLQ5H9B9 411 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 GOLGA6L10A0A0M3HER8 536 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 JAKMIP3Q5VZ66 844 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 CCDC141Q6ZP82 1450 aa11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 THEMISQ8N1K5 641 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-203ENST00000396595 GSDMDP57764 484 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 WWC2Q6AWC2 1192 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 SPA17Q15506 151 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 AIDAQ96BJ3 306 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 THUMPD2Q9BTF0 503 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 EZRP15311 586 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 C8orf76Q96K31 380 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 TOP2BQ02880 1626 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 CCDC196A0A1B0GTZ2 297 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 IDH1O75874 414 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 KIF4BQ2VIQ3 1234 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 SKAP1Q86WV1 359 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 AKAP2Q9Y2D5 859 aa11.92□□□□□ -0.5
LIMCH1-203ENST00000396595 C11orf95C9JLR9 678 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 UVSSAQ2YD98 709 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 CASQ1P31415 396 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 KLHL40Q2TBA0 621 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 LARP1Q6PKG0 1096 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 NCOA1Q15788 1441 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 TBC1D32Q96NH3 1257 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 CAVIN2O95810 425 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 MNAT1P51948 309 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 TOM1L2Q6ZVM7 507 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 DNAAF4Q8WXU2 420 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 PHAXQ9H814 394 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 RAI14Q9P0K7 980 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 LRP2BPQ9P2M1 347 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 ANKRD62A6NC57 917 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 MICALCLQ6ZW33 695 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 STRN4Q9NRL3 753 aa11.91□□□□□ -0.5
LIMCH1-203ENST00000396595 BAG4O95429 457 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 TRIM27P14373 513 aa11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 HOMEZQ8IX15 550 aa11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 SEPT11Q9NVA2 429 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 NUDT16Q96DE0 195 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 FKBP15Q5T1M5 1219 aa11.9□□□□□ -0.5
LIMCH1-203ENST00000396595 SLC26A8Q96RN1 970 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms