RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 ATP6V1AP38606 617 aa31.63■■■□□ 2.65
SHMT1-204ENST00000395682 GAS2L2Q8NHY3 880 aa31.63■■■□□ 2.65
SHMT1-204ENST00000395682 MTFR1LQ9H019 292 aa31.63■■■□□ 2.65
SHMT1-204ENST00000395682 RBM42Q9BTD8 480 aaKnown RBP31.62■■■□□ 2.65
SHMT1-204ENST00000395682 SLC52A2Q9HAB3 445 aa31.61■■■□□ 2.65
SHMT1-204ENST00000395682 PPP1R1BQ9UD71 204 aaPredicted RBP31.61■■■□□ 2.65
SHMT1-204ENST00000395682 ITPK1Q13572 414 aa31.6■■■□□ 2.65
SHMT1-204ENST00000395682 LINC00116Q8NCU8 138 aa31.59■■■□□ 2.65
SHMT1-204ENST00000395682 C5P01031 1676 aa31.59■■■□□ 2.65
SHMT1-204ENST00000395682 SCN11AQ9UI33 1791 aa31.58■■■□□ 2.65
SHMT1-204ENST00000395682 GNAT3A8MTJ3 354 aa31.58■■■□□ 2.65
SHMT1-204ENST00000395682 PTGER2P43116 358 aa31.58■■■□□ 2.65
SHMT1-204ENST00000395682 SLC16A10Q8TF71 515 aa31.58■■■□□ 2.65
SHMT1-204ENST00000395682 AK7Q96M32 723 aa31.57■■■□□ 2.64
SHMT1-204ENST00000395682 SLC4A9Q96Q91 983 aa31.57■■■□□ 2.64
SHMT1-204ENST00000395682 MSH5O43196 834 aa31.56■■■□□ 2.64
SHMT1-204ENST00000395682 PTCD1O75127 700 aaKnown RBP31.56■■■□□ 2.64
SHMT1-204ENST00000395682 COL23A1Q86Y22 540 aaPredicted RBP31.56■■■□□ 2.64
SHMT1-204ENST00000395682 TAF1LQ8IZX4 1826 aa31.56■■■□□ 2.64
SHMT1-204ENST00000395682 MAP3K5Q99683 1374 aa31.56■■■□□ 2.64
SHMT1-204ENST00000395682 IL17REQ8NFR9 667 aa31.54■■■□□ 2.64
SHMT1-204ENST00000395682 QSER1Q2KHR3 1735 aa31.54■■■□□ 2.64
SHMT1-204ENST00000395682 FLAD1Q8NFF5 587 aa31.53■■■□□ 2.64
SHMT1-204ENST00000395682 C4BP0C0L5 1744 aa31.52■■■□□ 2.64
SHMT1-204ENST00000395682 MYBBP1AQ9BQG0 1328 aaKnown RBP31.52■■■□□ 2.64
SHMT1-204ENST00000395682 TUBGCP6Q96RT7 1819 aa31.52■■■□□ 2.64
SHMT1-204ENST00000395682 ZNF316A6NFI3 1004 aaPredicted RBP31.51■■■□□ 2.63
SHMT1-204ENST00000395682 SGIP1Q9BQI5 828 aa31.51■■■□□ 2.63
SHMT1-204ENST00000395682 SLC39A6Q13433 755 aa31.5■■■□□ 2.63
SHMT1-204ENST00000395682 SMIM5Q71RC9 77 aa31.49■■■□□ 2.63
SHMT1-204ENST00000395682 AMIGO3Q86WK7 504 aa31.49■■■□□ 2.63
SHMT1-204ENST00000395682 MRC1P22897 1456 aa31.48■■■□□ 2.63
SHMT1-204ENST00000395682 PHF14O94880 888 aa31.48■■■□□ 2.63
SHMT1-204ENST00000395682 TEFQ10587 303 aa31.48■■■□□ 2.63
SHMT1-204ENST00000395682 ADAMTS7Q9UKP4 1686 aa31.48■■■□□ 2.63
SHMT1-204ENST00000395682 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.47■■■□□ 2.63
SHMT1-204ENST00000395682 GNPATO15228 680 aa31.47■■■□□ 2.63
SHMT1-204ENST00000395682 NEFMP07197 916 aa31.47■■■□□ 2.63
SHMT1-204ENST00000395682 PRKRIP1Q9H875 184 aaPredicted RBP31.47■■■□□ 2.63
SHMT1-204ENST00000395682 VIRMAQ69YN4 1812 aaKnown RBP31.45■■■□□ 2.63
SHMT1-204ENST00000395682 RC3H1Q5TC82 1133 aaKnown RBP31.45■■■□□ 2.63
SHMT1-204ENST00000395682 PNNQ9H307 717 aaKnown RBP31.45■■■□□ 2.63
SHMT1-204ENST00000395682 SSFA2P28290 1259 aa31.44■■■□□ 2.62
SHMT1-204ENST00000395682 POLD1P28340 1107 aa31.44■■■□□ 2.62
SHMT1-204ENST00000395682 RTF1Q92541 710 aaKnown RBP31.44■■■□□ 2.62
SHMT1-204ENST00000395682 ARXQ96QS3 562 aa31.44■■■□□ 2.62
SHMT1-204ENST00000395682 PLEKHF1Q96S99 279 aa31.43■■■□□ 2.62
SHMT1-204ENST00000395682 ZNF831Q5JPB2 1677 aa31.43■■■□□ 2.62
SHMT1-204ENST00000395682 CEMIPQ8WUJ3 1361 aa31.42■■■□□ 2.62
SHMT1-204ENST00000395682 MCM10Q7L590 875 aa31.41■■■□□ 2.62
SHMT1-204ENST00000395682 RTCBQ9Y3I0 505 aaKnown RBP31.41■■■□□ 2.62
SHMT1-204ENST00000395682 CNTNAP4Q9C0A0 1308 aa31.41■■■□□ 2.62
SHMT1-204ENST00000395682 UBR3Q6ZT12 1888 aa31.4■■■□□ 2.62
SHMT1-204ENST00000395682 HTATSF1O43719 755 aaKnown RBP31.4■■■□□ 2.62
SHMT1-204ENST00000395682 MSL1Q68DK7 614 aa31.4■■■□□ 2.62
SHMT1-204ENST00000395682 TTC5Q8N0Z6 440 aa31.4■■■□□ 2.62
SHMT1-204ENST00000395682 TRAPPC3LQ5T215 181 aa31.39■■■□□ 2.62
SHMT1-204ENST00000395682 DNAJC10Q8IXB1 793 aa31.39■■■□□ 2.62
SHMT1-204ENST00000395682 FHDC1Q9C0D6 1143 aaPredicted RBP31.38■■■□□ 2.61
SHMT1-204ENST00000395682 RPS6KA4O75676 772 aa31.37■■■□□ 2.61
SHMT1-204ENST00000395682 CRKLP46109 303 aaKnown RBP31.37■■■□□ 2.61
SHMT1-204ENST00000395682 DCTN1Q14203 1278 aa31.37■■■□□ 2.61
SHMT1-204ENST00000395682 ZNF790Q6PG37 636 aa31.37■■■□□ 2.61
SHMT1-204ENST00000395682 MAPK8IP3Q9UPT6 1336 aa31.36■■■□□ 2.61
SHMT1-204ENST00000395682 BTBD11A6QL63 1104 aa31.35■■■□□ 2.61
SHMT1-204ENST00000395682 NFE2L2Q16236 605 aa31.35■■■□□ 2.61
SHMT1-204ENST00000395682 VSIG10Q8N0Z9 540 aa31.35■■■□□ 2.61
SHMT1-204ENST00000395682 SYT17Q9BSW7 474 aa31.35■■■□□ 2.61
SHMT1-204ENST00000395682 COL5A3P25940 1745 aaPredicted RBP31.35■■■□□ 2.61
SHMT1-204ENST00000395682 KCPQ6ZWJ8 1503 aa31.34■■■□□ 2.61
SHMT1-204ENST00000395682 INTS5Q6P9B9 1019 aaKnown RBP31.33■■■□□ 2.61
SHMT1-204ENST00000395682 ARHGEF1Q92888 912 aaKnown RBP31.33■■■□□ 2.61
SHMT1-204ENST00000395682 ZNF496Q96IT1 587 aaPredicted RBP31.33■■■□□ 2.61
SHMT1-204ENST00000395682 COL24A1Q17RW2 1714 aa31.32■■■□□ 2.61
SHMT1-204ENST00000395682 CYP19A1P11511 503 aaPredicted RBP31.32■■■□□ 2.6
SHMT1-204ENST00000395682 ADRA2BP18089 450 aa31.32■■■□□ 2.6
SHMT1-204ENST00000395682 WDR43Q15061 677 aaKnown RBP eCLIP31.32■■■□□ 2.6
SHMT1-204ENST00000395682 MYH14Q7Z406 1995 aaKnown RBP31.31■■■□□ 2.6
SHMT1-204ENST00000395682 CCDC87Q9NVE4 849 aa31.31■■■□□ 2.6
SHMT1-204ENST00000395682 TJP1Q07157 1748 aa31.31■■■□□ 2.6
SHMT1-204ENST00000395682 KCNQ3O43525 872 aa31.3■■■□□ 2.6
SHMT1-204ENST00000395682 SIPA1L3O60292 1781 aaPredicted RBP31.3■■■□□ 2.6
SHMT1-204ENST00000395682 RFC4P35249 363 aa31.29■■■□□ 2.6
SHMT1-204ENST00000395682 KLHL34Q8N239 644 aa31.29■■■□□ 2.6
SHMT1-204ENST00000395682 TAF7Q15545 349 aaPredicted RBP31.28■■■□□ 2.6
SHMT1-204ENST00000395682 FMNL2Q96PY5 1086 aa31.28■■■□□ 2.6
SHMT1-204ENST00000395682 CICQ96RK0 1608 aaPredicted RBP31.27■■■□□ 2.6
SHMT1-204ENST00000395682 ADAMTS8Q9UP79 889 aa31.27■■■□□ 2.6
SHMT1-204ENST00000395682 HEG1Q9ULI3 1381 aa31.27■■■□□ 2.6
SHMT1-204ENST00000395682 STARD3NLO95772 234 aa31.26■■■□□ 2.59
SHMT1-204ENST00000395682 CCDC146Q8IYE0 955 aa31.26■■■□□ 2.59
SHMT1-204ENST00000395682 TEX13AQ9BXU3 409 aaPredicted RBP31.26■■■□□ 2.59
SHMT1-204ENST00000395682 UBR2Q8IWV8 1755 aa31.25■■■□□ 2.59
SHMT1-204ENST00000395682 DCAF8L1A6NGE4 600 aa31.24■■■□□ 2.59
SHMT1-204ENST00000395682 RIPK4P57078 832 aa31.24■■■□□ 2.59
SHMT1-204ENST00000395682 NLGN1Q8N2Q7 840 aa31.23■■■□□ 2.59
SHMT1-204ENST00000395682 THUMPD2Q9BTF0 503 aaKnown RBP31.23■■■□□ 2.59
SHMT1-204ENST00000395682 MIS18AQ9NYP9 233 aa31.23■■■□□ 2.59
SHMT1-204ENST00000395682 DLG5Q8TDM6 1919 aa31.22■■■□□ 2.59
SHMT1-204ENST00000395682 TMPOP42166 694 aaKnown RBP31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms