RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 CCT4P50991 539 aaKnown RBP17.41■□□□□ 0.38
SNCA-204ENST00000394989 LMOD2Q6P5Q4 547 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 C16orf71Q8IYS4 520 aaPredicted RBP17.41■□□□□ 0.38
SNCA-204ENST00000394989 CAMTA1Q9Y6Y1 1673 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 PXDNQ92626 1479 aa17.4■□□□□ 0.38
SNCA-204ENST00000394989 ALS2Q96Q42 1657 aa17.4■□□□□ 0.38
SNCA-204ENST00000394989 SOS1Q07889 1333 aaPredicted RBP17.4■□□□□ 0.38
SNCA-204ENST00000394989 N4BP2Q86UW6 1770 aaPredicted RBP17.4■□□□□ 0.38
SNCA-204ENST00000394989 FKBP5Q13451 457 aaPredicted RBP17.39■□□□□ 0.37
SNCA-204ENST00000394989 RGPD5Q99666 1765 aa17.39■□□□□ 0.37
SNCA-204ENST00000394989 MST1RQ04912 1400 aa17.39■□□□□ 0.37
SNCA-204ENST00000394989 ANTXR1Q9H6X2 564 aa17.39■□□□□ 0.37
SNCA-204ENST00000394989 RBM25P49756 843 aaKnown RBP17.38■□□□□ 0.37
SNCA-204ENST00000394989 TBC1D9Q6ZT07 1266 aa17.38■□□□□ 0.37
SNCA-204ENST00000394989 OTUD7AQ8TE49 926 aaPredicted RBP17.38■□□□□ 0.37
SNCA-204ENST00000394989 ANKRD24Q8TF21 1146 aa17.38■□□□□ 0.37
SNCA-204ENST00000394989 UBE2Q2Q8WVN8 375 aa17.38■□□□□ 0.37
SNCA-204ENST00000394989 EIF4A1P60842 406 aaKnown RBP17.37■□□□□ 0.37
SNCA-204ENST00000394989 AKAP4Q5JQC9 854 aa17.37■□□□□ 0.37
SNCA-204ENST00000394989 KCNQ3O43525 872 aa17.37■□□□□ 0.37
SNCA-204ENST00000394989 ZNF530Q6P9A1 599 aaPredicted RBP17.37■□□□□ 0.37
SNCA-204ENST00000394989 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
SNCA-204ENST00000394989 TMEM94Q12767 1356 aa17.37■□□□□ 0.37
SNCA-204ENST00000394989 SMARCA5O60264 1052 aaPredicted RBP17.36■□□□□ 0.37
SNCA-204ENST00000394989 HDGFL1Q5TGJ6 251 aa17.36■□□□□ 0.37
SNCA-204ENST00000394989 PHAXQ9H814 394 aaKnown RBP17.36■□□□□ 0.37
SNCA-204ENST00000394989 FRAT2O75474 233 aaPredicted RBP17.36■□□□□ 0.37
SNCA-204ENST00000394989 MPRIPQ6WCQ1 1025 aa17.36■□□□□ 0.37
SNCA-204ENST00000394989 DDX17Q92841 729 aaKnown RBP17.36■□□□□ 0.37
SNCA-204ENST00000394989 DNAJC5Q9H3Z4 198 aa17.36■□□□□ 0.37
SNCA-204ENST00000394989 APBB1O00213 710 aa17.35■□□□□ 0.37
SNCA-204ENST00000394989 PLEKHO1Q53GL0 409 aaPredicted RBP17.35■□□□□ 0.37
SNCA-204ENST00000394989 TTC22Q5TAA0 569 aa17.35■□□□□ 0.37
SNCA-204ENST00000394989 PXDNLA1KZ92 1463 aa17.35■□□□□ 0.37
SNCA-204ENST00000394989 GNAI2P04899 355 aa17.34■□□□□ 0.37
SNCA-204ENST00000394989 AMOTQ4VCS5 1084 aa17.34■□□□□ 0.37
SNCA-204ENST00000394989 KIF2CQ99661 725 aa17.34■□□□□ 0.37
SNCA-204ENST00000394989 ERBB3P21860 1342 aa17.33■□□□□ 0.36
SNCA-204ENST00000394989 RNMTO43148 476 aaKnown RBP17.32■□□□□ 0.36
SNCA-204ENST00000394989 ZC3H6P61129 1189 aaKnown RBP17.32■□□□□ 0.36
SNCA-204ENST00000394989 BTBD11A6QL63 1104 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 HMMRO75330 724 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 EIF2S2P20042 333 aaKnown RBP17.32■□□□□ 0.36
SNCA-204ENST00000394989 PNMA6EA0A0J9YXQ4 647 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 CDC45O75419 566 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 ATF3P18847 181 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 TEFQ10587 303 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 USP44Q9H0E7 712 aa17.32■□□□□ 0.36
SNCA-204ENST00000394989 DCCP43146 1447 aa17.31■□□□□ 0.36
SNCA-204ENST00000394989 SIPA1L3O60292 1781 aaPredicted RBP17.31■□□□□ 0.36
SNCA-204ENST00000394989 CHPF2Q9P2E5 772 aa17.31■□□□□ 0.36
SNCA-204ENST00000394989 GNAI3P08754 354 aa17.31■□□□□ 0.36
SNCA-204ENST00000394989 ADAMTS7Q9UKP4 1686 aa17.31■□□□□ 0.36
SNCA-204ENST00000394989 CRYBG1Q9Y4K1 1723 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 OVOS2A0A0G2JMS6 1433 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 HOXB7P09629 217 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 SPRYD3Q8NCJ5 442 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 EXOC6BQ9Y2D4 811 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 C1orf141Q5JVX7 400 aa17.3■□□□□ 0.36
SNCA-204ENST00000394989 LRRFIP2Q9Y608 721 aaKnown RBP17.29■□□□□ 0.36
SNCA-204ENST00000394989 COL18A1P39060 1754 aa17.29■□□□□ 0.36
SNCA-204ENST00000394989 SDSP20132 328 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 ATP8B2P98198 1209 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 NCOA3Q9Y6Q9 1424 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 HEG1Q9ULI3 1381 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 ANXA1P04083 346 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 HSPA2P54652 639 aa17.28■□□□□ 0.36
SNCA-204ENST00000394989 LMTK3Q96Q04 1460 aa17.27■□□□□ 0.36
SNCA-204ENST00000394989 SALL3Q9BXA9 1300 aa17.27■□□□□ 0.36
SNCA-204ENST00000394989 CABLES1Q8TDN4 633 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 SNX21Q969T3 373 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 XIRP1Q702N8 1843 aaKnown RBP17.26■□□□□ 0.35
SNCA-204ENST00000394989 TUBGCP6Q96RT7 1819 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 PRAMEF22A3QJZ6 481 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 OSBPL3Q9H4L5 887 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 ADCY9O60503 1353 aa17.26■□□□□ 0.35
SNCA-204ENST00000394989 IBTKQ9P2D0 1353 aaPredicted RBP17.26■□□□□ 0.35
SNCA-204ENST00000394989 PI4KAP2A4QPH2 592 aa17.25■□□□□ 0.35
SNCA-204ENST00000394989 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
SNCA-204ENST00000394989 CD2BP2O95400 341 aaKnown RBP17.25■□□□□ 0.35
SNCA-204ENST00000394989 PDE1AP54750 535 aa17.25■□□□□ 0.35
SNCA-204ENST00000394989 PI4KAP1Q8N8J0 262 aa17.25■□□□□ 0.35
SNCA-204ENST00000394989 UBTFL1P0CB47 393 aaPredicted RBP17.25■□□□□ 0.35
SNCA-204ENST00000394989 BEND3Q5T5X7 828 aa17.25■□□□□ 0.35
SNCA-204ENST00000394989 HSCBQ8IWL3 235 aa17.25■□□□□ 0.35
SNCA-204ENST00000394989 RBM42Q9BTD8 480 aaKnown RBP17.24■□□□□ 0.35
SNCA-204ENST00000394989 SRCIN1Q9C0H9 1055 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 TNS3Q68CZ2 1445 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 MEGF6O75095 1541 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 CADPS2Q86UW7 1296 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 NBPF7P0C2Y1 421 aaPredicted RBP17.24■□□□□ 0.35
SNCA-204ENST00000394989 PROSER3Q2NL68 480 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 LRRCC1Q9C099 1032 aa17.24■□□□□ 0.35
SNCA-204ENST00000394989 NPHP3Q7Z494 1330 aa17.23■□□□□ 0.35
SNCA-204ENST00000394989 KDM6AO15550 1401 aaPredicted RBP17.23■□□□□ 0.35
SNCA-204ENST00000394989 TSHZ3Q63HK5 1081 aa17.23■□□□□ 0.35
SNCA-204ENST00000394989 DNAAF4Q8WXU2 420 aa17.23■□□□□ 0.35
SNCA-204ENST00000394989 NLRP2Q9NX02 1062 aa17.23■□□□□ 0.35
SNCA-204ENST00000394989 SCN11AQ9UI33 1791 aa17.23■□□□□ 0.35
SNCA-204ENST00000394989 SSH3Q8TE77 659 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms