RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RNMTO43148 476 aaKnown RBP18.87■□□□□ 0.61
GPC3-202ENST00000394299 DAXXQ9UER7 740 aaPredicted RBP18.87■□□□□ 0.61
GPC3-202ENST00000394299 SMARCA5O60264 1052 aaPredicted RBP18.86■□□□□ 0.61
GPC3-202ENST00000394299 C1orf141Q5JVX7 400 aa18.86■□□□□ 0.61
GPC3-202ENST00000394299 TBC1D32Q96NH3 1257 aa18.86■□□□□ 0.61
GPC3-202ENST00000394299 BABAM1Q9NWV8 329 aa18.86■□□□□ 0.61
GPC3-202ENST00000394299 AMOTQ4VCS5 1084 aa18.85■□□□□ 0.61
GPC3-202ENST00000394299 RGPD5Q99666 1765 aa18.85■□□□□ 0.61
GPC3-202ENST00000394299 RPAP2Q8IXW5 612 aaPredicted RBP18.85■□□□□ 0.61
GPC3-202ENST00000394299 OTUD7AQ8TE49 926 aaPredicted RBP18.85■□□□□ 0.61
GPC3-202ENST00000394299 PRAMEF22A3QJZ6 481 aa18.84■□□□□ 0.61
GPC3-202ENST00000394299 CCT4P50991 539 aaKnown RBP18.84■□□□□ 0.61
GPC3-202ENST00000394299 PHRF1Q9P1Y6 1649 aaKnown RBP18.84■□□□□ 0.61
GPC3-202ENST00000394299 UPF2Q9HAU5 1272 aaKnown RBP18.84■□□□□ 0.61
GPC3-202ENST00000394299 NPHP3Q7Z494 1330 aa18.83■□□□□ 0.61
GPC3-202ENST00000394299 ZNF335Q9H4Z2 1342 aaPredicted RBP18.83■□□□□ 0.61
GPC3-202ENST00000394299 CHPF2Q9P2E5 772 aa18.83■□□□□ 0.61
GPC3-202ENST00000394299 KIF1AQ12756 1690 aa18.83■□□□□ 0.6
GPC3-202ENST00000394299 CSB-PGBD3P0DP91 1061 aa18.82■□□□□ 0.6
GPC3-202ENST00000394299 BRINP3Q76B58 766 aa18.82■□□□□ 0.6
GPC3-202ENST00000394299 ALS2Q96Q42 1657 aa18.82■□□□□ 0.6
GPC3-202ENST00000394299 PLEKHM2Q8IWE5 1019 aa18.81■□□□□ 0.6
GPC3-202ENST00000394299 NCAPD2Q15021 1401 aa18.81■□□□□ 0.6
GPC3-202ENST00000394299 BMP2KLQ5H9B9 411 aa18.81■□□□□ 0.6
GPC3-202ENST00000394299 C22orf23Q9BZE7 217 aa18.81■□□□□ 0.6
GPC3-202ENST00000394299 SPATA31A3Q5VYP0 1347 aa18.8■□□□□ 0.6
GPC3-202ENST00000394299 DCCP43146 1447 aa18.8■□□□□ 0.6
GPC3-202ENST00000394299 GSPT1P15170 499 aaKnown RBP18.79■□□□□ 0.6
GPC3-202ENST00000394299 RAPGEF4Q8WZA2 1011 aa18.79■□□□□ 0.6
GPC3-202ENST00000394299 GNAI2P04899 355 aa18.79■□□□□ 0.6
GPC3-202ENST00000394299 SLC39A6Q13433 755 aa18.79■□□□□ 0.6
GPC3-202ENST00000394299 PNMA6EA0A0J9YXQ4 647 aa18.78■□□□□ 0.6
GPC3-202ENST00000394299 USP44Q9H0E7 712 aa18.78■□□□□ 0.6
GPC3-202ENST00000394299 NCOA3Q9Y6Q9 1424 aa18.78■□□□□ 0.6
GPC3-202ENST00000394299 PROSER3Q2NL68 480 aa18.78■□□□□ 0.6
GPC3-202ENST00000394299 EXOC6BQ9Y2D4 811 aa18.78■□□□□ 0.6
GPC3-202ENST00000394299 LRRFIP2Q9Y608 721 aaKnown RBP18.77■□□□□ 0.6
GPC3-202ENST00000394299 FAM208AQ9UK61 1670 aaKnown RBP18.77■□□□□ 0.6
GPC3-202ENST00000394299 TNS3Q68CZ2 1445 aa18.77■□□□□ 0.6
GPC3-202ENST00000394299 LMTK3Q96Q04 1460 aa18.77■□□□□ 0.6
GPC3-202ENST00000394299 PI4KAP2A4QPH2 592 aa18.77■□□□□ 0.6
GPC3-202ENST00000394299 PI4KAP1Q8N8J0 262 aa18.77■□□□□ 0.6
GPC3-202ENST00000394299 SOS1Q07889 1333 aaPredicted RBP18.77■□□□□ 0.59
GPC3-202ENST00000394299 GIGYF1O75420 1035 aaPredicted RBP18.76■□□□□ 0.59
GPC3-202ENST00000394299 SLAIN2Q9P270 581 aa18.76■□□□□ 0.59
GPC3-202ENST00000394299 TBC1D9Q6ZT07 1266 aa18.76■□□□□ 0.59
GPC3-202ENST00000394299 LMO7Q8WWI1 1683 aa18.76■□□□□ 0.59
GPC3-202ENST00000394299 TATP17735 454 aaPredicted RBP18.75■□□□□ 0.59
GPC3-202ENST00000394299 NFATC2IPQ8NCF5 419 aa18.75■□□□□ 0.59
GPC3-202ENST00000394299 TBC1D2Q9BYX2 928 aa18.75■□□□□ 0.59
GPC3-202ENST00000394299 MEGF6O75095 1541 aa18.74■□□□□ 0.59
GPC3-202ENST00000394299 XIRP1Q702N8 1843 aaKnown RBP18.74■□□□□ 0.59
GPC3-202ENST00000394299 GNAI3P08754 354 aa18.74■□□□□ 0.59
GPC3-202ENST00000394299 PHKG2P15735 406 aa18.74■□□□□ 0.59
GPC3-202ENST00000394299 SPRYD3Q8NCJ5 442 aa18.74■□□□□ 0.59
GPC3-202ENST00000394299 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 HMMRO75330 724 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 NBPF7P0C2Y1 421 aaPredicted RBP18.73■□□□□ 0.59
GPC3-202ENST00000394299 ATP8B2P98198 1209 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 SLKQ9H2G2 1235 aaPredicted RBP18.73■□□□□ 0.59
GPC3-202ENST00000394299 KDM3BQ7LBC6 1761 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 HOXB7P09629 217 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 TSHZ3Q63HK5 1081 aa18.73■□□□□ 0.59
GPC3-202ENST00000394299 CYP27B1O15528 508 aa18.72■□□□□ 0.59
GPC3-202ENST00000394299 TTC22Q5TAA0 569 aa18.72■□□□□ 0.59
GPC3-202ENST00000394299 SRCIN1Q9C0H9 1055 aa18.72■□□□□ 0.59
GPC3-202ENST00000394299 UBTFL1P0CB47 393 aaPredicted RBP18.71■□□□□ 0.59
GPC3-202ENST00000394299 BEND3Q5T5X7 828 aa18.71■□□□□ 0.59
GPC3-202ENST00000394299 DNAAF4Q8WXU2 420 aa18.71■□□□□ 0.59
GPC3-202ENST00000394299 COL18A1P39060 1754 aa18.71■□□□□ 0.59
GPC3-202ENST00000394299 KDM6AO15550 1401 aaPredicted RBP18.71■□□□□ 0.59
GPC3-202ENST00000394299 BECN1Q14457 450 aa18.71■□□□□ 0.59
GPC3-202ENST00000394299 CAMTA1Q9Y6Y1 1673 aa18.71■□□□□ 0.59
GPC3-202ENST00000394299 SLC52A2Q9HAB3 445 aa18.7■□□□□ 0.58
GPC3-202ENST00000394299 DBF4Q9UBU7 674 aaPredicted RBP18.7■□□□□ 0.58
GPC3-202ENST00000394299 SPG7Q9UQ90 795 aa18.7■□□□□ 0.58
GPC3-202ENST00000394299 AIMP1Q12904 312 aaKnown RBP18.7■□□□□ 0.58
GPC3-202ENST00000394299 RTL5Q5HYW3 569 aaPredicted RBP18.7■□□□□ 0.58
GPC3-202ENST00000394299 ZNF790Q6PG37 636 aa18.7■□□□□ 0.58
GPC3-202ENST00000394299 ADCY9O60503 1353 aa18.7■□□□□ 0.58
GPC3-202ENST00000394299 PRDM11Q9NQV5 511 aa18.69■□□□□ 0.58
GPC3-202ENST00000394299 HEG1Q9ULI3 1381 aa18.69■□□□□ 0.58
GPC3-202ENST00000394299 NFKBIBQ15653 356 aa18.69■□□□□ 0.58
GPC3-202ENST00000394299 IFNL2Q8IZJ0 200 aa18.69■□□□□ 0.58
GPC3-202ENST00000394299 MAP3K2Q9Y2U5 619 aa18.69■□□□□ 0.58
GPC3-202ENST00000394299 SDSP20132 328 aa18.68■□□□□ 0.58
GPC3-202ENST00000394299 PIP4K2AP48426 406 aaPredicted RBP18.68■□□□□ 0.58
GPC3-202ENST00000394299 CDC45O75419 566 aa18.68■□□□□ 0.58
GPC3-202ENST00000394299 PPP1R42Q7Z4L9 355 aa18.67■□□□□ 0.58
GPC3-202ENST00000394299 CACNA1FO60840 1977 aa18.67■□□□□ 0.58
GPC3-202ENST00000394299 SOS2Q07890 1332 aaPredicted RBP18.67■□□□□ 0.58
GPC3-202ENST00000394299 PDIA6Q15084 440 aa18.67■□□□□ 0.58
GPC3-202ENST00000394299 CWF19L2Q2TBE0 894 aaKnown RBP18.67■□□□□ 0.58
GPC3-202ENST00000394299 ZNF496Q96IT1 587 aaPredicted RBP18.67■□□□□ 0.58
GPC3-202ENST00000394299 MYL6BP14649 208 aa18.66■□□□□ 0.58
GPC3-202ENST00000394299 RBM25P49756 843 aaKnown RBP18.66■□□□□ 0.58
GPC3-202ENST00000394299 TOM1L2Q6ZVM7 507 aa18.66■□□□□ 0.58
GPC3-202ENST00000394299 PDE1AP54750 535 aa18.66■□□□□ 0.58
GPC3-202ENST00000394299 KIF2CQ99661 725 aa18.66■□□□□ 0.58
GPC3-202ENST00000394299 IL1RAPL2Q9NP60 686 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms