RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ZDHHC9Q9Y397 364 aa12.2□□□□□ -0.46
COL17A1-203ENST00000393211 LRRC37A3O60309 1634 aa12.2□□□□□ -0.46
COL17A1-203ENST00000393211 SBNO1A3KN83 1393 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 TMEM2Q9UHN6 1383 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 ACEP12821 1306 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 HSP90AA2PQ14568 343 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 KRT24Q2M2I5 525 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 LRSAM1Q6UWE0 723 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 ESYT1Q9BSJ8 1104 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 STK31Q9BXU1 1019 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 NOL7Q9UMY1 257 aaKnown RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 FLT4P35916 1363 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 NCKAP5LQ9HCH0 1330 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 ZNF500O60304 480 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 PRPF40AO75400 957 aaKnown RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 BRD1O95696 1058 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 NCLP19338 710 aaKnown RBP12.19□□□□□ -0.46
COL17A1-203ENST00000393211 ATP8B2P98198 1209 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 LRRCC1Q9C099 1032 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
COL17A1-203ENST00000393211 UBR1Q8IWV7 1749 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 PTPRUQ92729 1446 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 ROBO2Q9HCK4 1378 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 XRN1Q8IZH2 1706 aaKnown RBP12.18□□□□□ -0.46
COL17A1-203ENST00000393211 FAM208AQ9UK61 1670 aaKnown RBP12.18□□□□□ -0.46
COL17A1-203ENST00000393211 FAM69CQ0P6D2 419 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 ZGPATQ8N5A5 531 aaKnown RBP12.18□□□□□ -0.46
COL17A1-203ENST00000393211 GPT2Q8TD30 523 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 SYAP1Q96A49 352 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-203ENST00000393211 TMX3Q96JJ7 454 aa12.18□□□□□ -0.46
COL17A1-203ENST00000393211 ADAMTS13Q76LX8 1427 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 TNRQ92752 1358 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 MX1P20591 662 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 NEK4P51957 841 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 PKP1Q13835 747 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 HSP90AB2PQ58FF8 381 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 CCDC30Q5VVM6 783 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 RBSNQ9H1K0 784 aa12.17□□□□□ -0.46
COL17A1-203ENST00000393211 ESF1Q9H501 851 aaKnown RBP12.17□□□□□ -0.46
COL17A1-203ENST00000393211 PLEKHG1Q9ULL1 1385 aa12.16□□□□□ -0.46
COL17A1-203ENST00000393211 KIF13AQ9H1H9 1805 aa12.16□□□□□ -0.46
COL17A1-203ENST00000393211 IGSF1Q8N6C5 1336 aa12.16□□□□□ -0.46
COL17A1-203ENST00000393211 CSPP1Q1MSJ5 1256 aa12.16□□□□□ -0.46
COL17A1-203ENST00000393211 MAP3K19Q56UN5 1328 aa12.16□□□□□ -0.46
COL17A1-203ENST00000393211 RIMS1Q86UR5 1692 aaKnown RBP12.15□□□□□ -0.46
COL17A1-203ENST00000393211 CHMLP26374 656 aa12.15□□□□□ -0.46
COL17A1-203ENST00000393211 PRIM1P49642 420 aaKnown RBP12.15□□□□□ -0.46
COL17A1-203ENST00000393211 MTHFSDQ2M296 383 aaKnown RBP12.15□□□□□ -0.46
COL17A1-203ENST00000393211 CCDC39Q9UFE4 941 aa12.15□□□□□ -0.46
COL17A1-203ENST00000393211 APBB1O00213 710 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 RAB11FIP3O75154 756 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 PHF14O94880 888 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 SLC4A10Q6U841 1118 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 KIAA1211Q6ZU35 1233 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 G2E3Q7L622 706 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 CHMP4AQ9BY43 222 aa12.15□□□□□ -0.47
COL17A1-203ENST00000393211 PLEKHG5O94827 1062 aa12.14□□□□□ -0.47
COL17A1-203ENST00000393211 TSPOAP1O95153 1857 aa12.14□□□□□ -0.47
COL17A1-203ENST00000393211 FLIIQ13045 1269 aa12.14□□□□□ -0.47
COL17A1-203ENST00000393211 TMEM63CQ9P1W3 806 aa12.14□□□□□ -0.47
COL17A1-203ENST00000393211 USP54Q70EL1 1684 aa12.14□□□□□ -0.47
COL17A1-203ENST00000393211 F6X3S4 739 aa12.13□□□□□ -0.47
COL17A1-203ENST00000393211 TRHP20396 242 aaPredicted RBP12.13□□□□□ -0.47
COL17A1-203ENST00000393211 PDCL3Q9H2J4 239 aa12.13□□□□□ -0.47
COL17A1-203ENST00000393211 ZKSCAN5Q9Y2L8 839 aa12.13□□□□□ -0.47
COL17A1-203ENST00000393211 WDR33Q9C0J8 1336 aaKnown RBP12.13□□□□□ -0.47
COL17A1-203ENST00000393211 UVSSAQ2YD98 709 aa12.12□□□□□ -0.47
COL17A1-203ENST00000393211 FAM184AQ8NB25 1140 aa12.12□□□□□ -0.47
COL17A1-203ENST00000393211 MAP7D2Q96T17 732 aa12.12□□□□□ -0.47
COL17A1-203ENST00000393211 EXOC6BQ9Y2D4 811 aa12.12□□□□□ -0.47
COL17A1-203ENST00000393211 GNAT3A8MTJ3 354 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 FKBP5Q13451 457 aaPredicted RBP12.11□□□□□ -0.47
COL17A1-203ENST00000393211 TMEM87AQ8NBN3 555 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 SSH3Q8TE77 659 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 TSPY26PQ9H489 355 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 ANO2Q9NQ90 1003 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 SYCE3A1L190 88 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 LETM1O95202 739 aaPredicted RBP12.11□□□□□ -0.47
COL17A1-203ENST00000393211 HSPA4P34932 840 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 EYA1Q99502 592 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 MIS18AQ9NYP9 233 aa12.11□□□□□ -0.47
COL17A1-203ENST00000393211 RBM27Q9P2N5 1060 aaKnown RBP12.11□□□□□ -0.47
COL17A1-203ENST00000393211 CEP170BQ9Y4F5 1589 aaPredicted RBP12.1□□□□□ -0.47
COL17A1-203ENST00000393211 PNMA6EA0A0J9YXQ4 647 aa12.1□□□□□ -0.47
COL17A1-203ENST00000393211 TRIM6-TRIM34B2RNG4 842 aa12.1□□□□□ -0.47
COL17A1-203ENST00000393211 FOXO3O43524 673 aa12.1□□□□□ -0.47
COL17A1-203ENST00000393211 AMPHP49418 695 aa12.1□□□□□ -0.47
COL17A1-203ENST00000393211 MLECQ14165 292 aa12.1□□□□□ -0.47
COL17A1-203ENST00000393211 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.1□□□□□ -0.47
COL17A1-203ENST00000393211 MAP3K5Q99683 1374 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 UBTFL1P0CB47 393 aaPredicted RBP12.09□□□□□ -0.47
COL17A1-203ENST00000393211 POLA2Q14181 598 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 TAF7Q15545 349 aaPredicted RBP12.09□□□□□ -0.47
COL17A1-203ENST00000393211 HSP90AB4PQ58FF6 505 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 RILPL2Q969X0 211 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 PALD1Q9ULE6 856 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 ANKARQ7Z5J8 1434 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 DIP2AQ14689 1571 aa12.09□□□□□ -0.47
COL17A1-203ENST00000393211 HOXB7P09629 217 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms