RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 ABTB2Q8N961 1025 aa21.73■■□□□ 1.07
SQSTM1-202ENST00000389805 TBC1D9Q6ZT07 1266 aa21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 SLC4A10Q6U841 1118 aa21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 NECTIN2Q92692 538 aa21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 PKP1Q13835 747 aa21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 ZSCAN23Q3MJ62 389 aa21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 RBM27Q9P2N5 1060 aaKnown RBP21.72■■□□□ 1.07
SQSTM1-202ENST00000389805 CEP170BQ9Y4F5 1589 aaPredicted RBP21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 NALCNQ8IZF0 1738 aa21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 ARHGEF10O15013 1369 aa21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 PLEKHG5O94827 1062 aa21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 PRIM1P49642 420 aaKnown RBP21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 OTUD7AQ8TE49 926 aaPredicted RBP21.71■■□□□ 1.07
SQSTM1-202ENST00000389805 CHAMP1Q96JM3 812 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 MSH6P52701 1360 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 RGPD1P0DJD0 1748 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 USHBP1Q8N6Y0 703 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 DCTPP1Q9H773 170 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 KIAA0232Q92628 1395 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 IGSF1Q8N6C5 1336 aa21.7■■□□□ 1.06
SQSTM1-202ENST00000389805 SMARCA5O60264 1052 aaPredicted RBP21.69■■□□□ 1.06
SQSTM1-202ENST00000389805 HOXC9P31274 260 aa21.69■■□□□ 1.06
SQSTM1-202ENST00000389805 GSPT1P15170 499 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-202ENST00000389805 PLEKHM2Q8IWE5 1019 aa21.69■■□□□ 1.06
SQSTM1-202ENST00000389805 NOL7Q9UMY1 257 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-202ENST00000389805 CEP85Q6P2H3 762 aa21.68■■□□□ 1.06
SQSTM1-202ENST00000389805 ANKRD44Q8N8A2 993 aa21.67■■□□□ 1.06
SQSTM1-202ENST00000389805 KDRP35968 1356 aa21.67■■□□□ 1.06
SQSTM1-202ENST00000389805 A0A0U1RQG5 324 aaPredicted RBP21.67■■□□□ 1.06
SQSTM1-202ENST00000389805 PRPF40AO75400 957 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-202ENST00000389805 HAP1P54257 671 aaPredicted RBP21.66■■□□□ 1.06
SQSTM1-202ENST00000389805 FER1L4A9Z1Z3 1794 aa21.66■■□□□ 1.06
SQSTM1-202ENST00000389805 PIK3C2AO00443 1686 aa21.66■■□□□ 1.06
SQSTM1-202ENST00000389805 ZNF445P59923 1031 aa21.66■■□□□ 1.06
SQSTM1-202ENST00000389805 ATP10DQ9P241 1426 aa21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 FOXD4L5Q5VV16 416 aaPredicted RBP21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 FOXD4L4Q8WXT5 416 aaPredicted RBP21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 LMBRD1Q9NUN5 540 aa21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 ZHX1Q9UKY1 873 aaPredicted RBP21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 PTPRCP08575 1304 aa21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 RTL1A6NKG5 1358 aa21.65■■□□□ 1.06
SQSTM1-202ENST00000389805 IL17REQ8NFR9 667 aa21.64■■□□□ 1.06
SQSTM1-202ENST00000389805 TERF1P54274 439 aa21.64■■□□□ 1.05
SQSTM1-202ENST00000389805 RNF214Q8ND24 703 aa21.64■■□□□ 1.05
SQSTM1-202ENST00000389805 KIF24Q5T7B8 1368 aa21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 ZNF500O60304 480 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 JARID2Q92833 1246 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 MAP7D2Q96T17 732 aa21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 MPNDQ8N594 471 aa21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 GNAT3A8MTJ3 354 aa21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 RPAP2Q8IXW5 612 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-202ENST00000389805 ZKSCAN5Q9Y2L8 839 aa21.62■■□□□ 1.05
SQSTM1-202ENST00000389805 IBTKQ9P2D0 1353 aaPredicted RBP21.61■■□□□ 1.05
SQSTM1-202ENST00000389805 PHF8Q9UPP1 1060 aa21.61■■□□□ 1.05
SQSTM1-202ENST00000389805 SYCE3A1L190 88 aa21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 GPT2Q8TD30 523 aa21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 PDLIM2Q96JY6 352 aa21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 FMN2Q9NZ56 1722 aa21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 CLEC17AQ6ZS10 378 aa21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 ZGPATQ8N5A5 531 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-202ENST00000389805 CDC45O75419 566 aa21.59■■□□□ 1.05
SQSTM1-202ENST00000389805 HS1BP3Q53T59 392 aa21.59■■□□□ 1.05
SQSTM1-202ENST00000389805 TTC22Q5TAA0 569 aa21.59■■□□□ 1.05
SQSTM1-202ENST00000389805 TSC1Q92574 1164 aa21.59■■□□□ 1.05
SQSTM1-202ENST00000389805 NSFL1CQ9UNZ2 370 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-202ENST00000389805 XRN1Q8IZH2 1706 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-202ENST00000389805 SETD1BQ9UPS6 1966 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-202ENST00000389805 FKBP5Q13451 457 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-202ENST00000389805 ESCO1Q5FWF5 840 aa21.58■■□□□ 1.05
SQSTM1-202ENST00000389805 STK31Q9BXU1 1019 aa21.58■■□□□ 1.05
SQSTM1-202ENST00000389805 FLIIQ13045 1269 aa21.57■■□□□ 1.04
SQSTM1-202ENST00000389805 ANKLE2Q86XL3 938 aa21.57■■□□□ 1.04
SQSTM1-202ENST00000389805 NUCB2P80303 420 aa21.57■■□□□ 1.04
SQSTM1-202ENST00000389805 ANKARQ7Z5J8 1434 aa21.57■■□□□ 1.04
SQSTM1-202ENST00000389805 TMEM63CQ9P1W3 806 aa21.57■■□□□ 1.04
SQSTM1-202ENST00000389805 DYNC1I1O14576 645 aa21.56■■□□□ 1.04
SQSTM1-202ENST00000389805 PTMAP06454 111 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 PSME1Q06323 249 aa21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 DNTTIP2Q5QJE6 756 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 NBPF6Q5VWK0 638 aa21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 NBPF4Q96M43 638 aa21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 EXOC6BQ9Y2D4 811 aa21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 SDSP20132 328 aa21.55■■□□□ 1.04
SQSTM1-202ENST00000389805 TSHZ3Q63HK5 1081 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 CCT4P50991 539 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 TAF7Q15545 349 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 CSPP1Q1MSJ5 1256 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 NWD1Q149M9 1564 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 CCDC30Q5VVM6 783 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 SASS6Q6UVJ0 657 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 SMAP1Q8IYB5 467 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 LGR6Q9HBX8 967 aa21.54■■□□□ 1.04
SQSTM1-202ENST00000389805 HTATSF1O43719 755 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-202ENST00000389805 LRRC59Q96AG4 307 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-202ENST00000389805 MAP3K5Q99683 1374 aa21.53■■□□□ 1.04
SQSTM1-202ENST00000389805 RABEP1Q15276 862 aa21.52■■□□□ 1.04
SQSTM1-202ENST00000389805 FAM177BA6PVY3 158 aa21.52■■□□□ 1.04
SQSTM1-202ENST00000389805 CYP2E1P05181 493 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-202ENST00000389805 PHAXQ9H814 394 aaKnown RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms