RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 ZKSCAN5Q9Y2L8 839 aa16.94■□□□□ 0.3
SDC1-202ENST00000381150 RIMS1Q86UR5 1692 aaKnown RBP16.93■□□□□ 0.3
SDC1-202ENST00000381150 TTC21AQ8NDW8 1320 aa16.93■□□□□ 0.3
SDC1-202ENST00000381150 CDC45O75419 566 aa16.93■□□□□ 0.3
SDC1-202ENST00000381150 PRDM4Q9UKN5 801 aa16.93■□□□□ 0.3
SDC1-202ENST00000381150 NSFL1CQ9UNZ2 370 aaKnown RBP16.93■□□□□ 0.3
SDC1-202ENST00000381150 LMBRD1Q9NUN5 540 aa16.92■□□□□ 0.3
SDC1-202ENST00000381150 FMN2Q9NZ56 1722 aa16.92■□□□□ 0.3
SDC1-202ENST00000381150 SPDYE4A6NLX3 237 aa16.92■□□□□ 0.3
SDC1-202ENST00000381150 PIK3C2AO00443 1686 aa16.92■□□□□ 0.3
SDC1-202ENST00000381150 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
SDC1-202ENST00000381150 CHL1O00533 1208 aa16.91■□□□□ 0.3
SDC1-202ENST00000381150 CSPP1Q1MSJ5 1256 aa16.91■□□□□ 0.3
SDC1-202ENST00000381150 GPT2Q8TD30 523 aa16.91■□□□□ 0.3
SDC1-202ENST00000381150 TMEM63CQ9P1W3 806 aa16.9■□□□□ 0.3
SDC1-202ENST00000381150 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
SDC1-202ENST00000381150 CCDC39Q9UFE4 941 aa16.9■□□□□ 0.3
SDC1-202ENST00000381150 SMARCA5O60264 1052 aaPredicted RBP16.9■□□□□ 0.3
SDC1-202ENST00000381150 ST18O60284 1047 aa16.9■□□□□ 0.3
SDC1-202ENST00000381150 SASS6Q6UVJ0 657 aa16.89■□□□□ 0.29
SDC1-202ENST00000381150 SIRT2Q8IXJ6 389 aa16.89■□□□□ 0.29
SDC1-202ENST00000381150 PLPPR3Q6T4P5 718 aa16.89■□□□□ 0.29
SDC1-202ENST00000381150 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.89■□□□□ 0.29
SDC1-202ENST00000381150 CRB1P82279 1406 aa16.89■□□□□ 0.29
SDC1-202ENST00000381150 DTNBO60941 627 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 KIAA2012Q0VF49 1180 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 OTUD7AQ8TE49 926 aaPredicted RBP16.88■□□□□ 0.29
SDC1-202ENST00000381150 KDRP35968 1356 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 ARHGEF10O15013 1369 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 RABEP1Q15276 862 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 MCM10Q7L590 875 aa16.88■□□□□ 0.29
SDC1-202ENST00000381150 SBNO1A3KN83 1393 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 DYNC1I1O14576 645 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 KCNA6P17658 529 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 ZNF445P59923 1031 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 TTC12Q9H892 705 aaPredicted RBP16.87■□□□□ 0.29
SDC1-202ENST00000381150 NEK4P51957 841 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 KRT24Q2M2I5 525 aa16.87■□□□□ 0.29
SDC1-202ENST00000381150 RGS12O14924 1447 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 ANKARQ7Z5J8 1434 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 FLT4P35916 1363 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 KIAA0232Q92628 1395 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 USP54Q70EL1 1684 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 CASC1Q6TDU7 716 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 NGDNQ8NEJ9 315 aaKnown RBP16.86■□□□□ 0.29
SDC1-202ENST00000381150 USP25Q9UHP3 1055 aa16.86■□□□□ 0.29
SDC1-202ENST00000381150 CEP170BQ9Y4F5 1589 aaPredicted RBP16.85■□□□□ 0.29
SDC1-202ENST00000381150 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.85■□□□□ 0.29
SDC1-202ENST00000381150 SOX12O15370 315 aa16.85■□□□□ 0.29
SDC1-202ENST00000381150 ZNF500O60304 480 aaPredicted RBP16.85■□□□□ 0.29
SDC1-202ENST00000381150 GCC1Q96CN9 775 aa16.85■□□□□ 0.29
SDC1-202ENST00000381150 KIF24Q5T7B8 1368 aa16.85■□□□□ 0.29
SDC1-202ENST00000381150 GSPT1P15170 499 aaKnown RBP16.85■□□□□ 0.29
SDC1-202ENST00000381150 LRSAM1Q6UWE0 723 aa16.85■□□□□ 0.29
SDC1-202ENST00000381150 API5Q9BZZ5 524 aaKnown RBP16.85■□□□□ 0.29
SDC1-202ENST00000381150 CHMP4BQ9H444 224 aaKnown RBP16.85■□□□□ 0.29
SDC1-202ENST00000381150 MTHFSDQ2M296 383 aaKnown RBP16.84■□□□□ 0.29
SDC1-202ENST00000381150 IGSF1Q8N6C5 1336 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 NCOA3Q9Y6Q9 1424 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 FOXO3O43524 673 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 PPP4R3BQ5MIZ7 849 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 TSHZ3Q63HK5 1081 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 AK9Q5TCS8 1911 aa16.84■□□□□ 0.29
SDC1-202ENST00000381150 EYA1Q99502 592 aa16.83■□□□□ 0.29
SDC1-202ENST00000381150 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.28
SDC1-202ENST00000381150 TSPY26PQ9H489 355 aa16.83■□□□□ 0.28
SDC1-202ENST00000381150 CHD2O14647 1828 aaKnown RBP16.83■□□□□ 0.28
SDC1-202ENST00000381150 NWD1Q149M9 1564 aa16.82■□□□□ 0.28
SDC1-202ENST00000381150 MAPK8IP2Q13387 824 aaPredicted RBP16.82■□□□□ 0.28
SDC1-202ENST00000381150 MTERF4Q7Z6M4 381 aaKnown RBP16.81■□□□□ 0.28
SDC1-202ENST00000381150 SMAP1Q8IYB5 467 aaPredicted RBP16.81■□□□□ 0.28
SDC1-202ENST00000381150 SPC24Q8NBT2 197 aa16.81■□□□□ 0.28
SDC1-202ENST00000381150 CHMP3Q9Y3E7 222 aa16.81■□□□□ 0.28
SDC1-202ENST00000381150 LARP6Q9BRS8 491 aaKnown RBP16.8■□□□□ 0.28
SDC1-202ENST00000381150 CCDC94Q9BW85 323 aaPredicted RBP16.8■□□□□ 0.28
SDC1-202ENST00000381150 HS1BP3Q53T59 392 aa16.8■□□□□ 0.28
SDC1-202ENST00000381150 NLRP6P59044 892 aa16.8■□□□□ 0.28
SDC1-202ENST00000381150 UPF3BQ9BZI7 483 aaKnown RBP16.8■□□□□ 0.28
SDC1-202ENST00000381150 AMPHP49418 695 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 TERF1P54274 439 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 PLEKHM2Q8IWE5 1019 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 PDLIM2Q96JY6 352 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 USP26Q9BXU7 913 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 MIS18AQ9NYP9 233 aa16.79■□□□□ 0.28
SDC1-202ENST00000381150 SDSP20132 328 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 HOXC9P31274 260 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 SLC4A10Q6U841 1118 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 RILPL2Q969X0 211 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 ZDHHC9Q9Y397 364 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 TRIM6-TRIM34B2RNG4 842 aa16.78■□□□□ 0.28
SDC1-202ENST00000381150 HAP1P54257 671 aaPredicted RBP16.78■□□□□ 0.28
SDC1-202ENST00000381150 ATP10DQ9P241 1426 aa16.77■□□□□ 0.28
SDC1-202ENST00000381150 GADD45BO75293 160 aaPredicted RBP16.77■□□□□ 0.28
SDC1-202ENST00000381150 HCLS1P14317 486 aaPredicted RBP16.77■□□□□ 0.27
SDC1-202ENST00000381150 NOLC1Q14978 699 aaKnown RBP eCLIP16.77■□□□□ 0.277e-6■■■□□ 16.5
SDC1-202ENST00000381150 CWC22Q9HCG8 908 aaKnown RBP16.77■□□□□ 0.27
SDC1-202ENST00000381150 ANO2Q9NQ90 1003 aa16.77■□□□□ 0.27
SDC1-202ENST00000381150 KIF3AQ9Y496 699 aa16.76■□□□□ 0.27
SDC1-202ENST00000381150 PTPRCP08575 1304 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms