RNA–Protein interactions for RNA: ENST00000381140.8

GTF3A-201, Transcript of general transcription factor IIIA, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-201ENST00000381140 ATG3Q9NT62 314 aa25.68■■□□□ 1.7
GTF3A-201ENST00000381140 ADAMTS8Q9UP79 889 aa25.68■■□□□ 1.7
GTF3A-201ENST00000381140 TAF1LQ8IZX4 1826 aa25.67■■□□□ 1.7
GTF3A-201ENST00000381140 SLC27A3Q5K4L6 730 aa25.67■■□□□ 1.7
GTF3A-201ENST00000381140 SLC52A2Q9HAB3 445 aa25.67■■□□□ 1.7
GTF3A-201ENST00000381140 ANO8Q9HCE9 1232 aaPredicted RBP25.67■■□□□ 1.7
GTF3A-201ENST00000381140 IL17REQ8NFR9 667 aa25.66■■□□□ 1.7
GTF3A-201ENST00000381140 RTF1Q92541 710 aaKnown RBP25.66■■□□□ 1.7
GTF3A-201ENST00000381140 MRC1P22897 1456 aa25.66■■□□□ 1.7
GTF3A-201ENST00000381140 C5P01031 1676 aa25.66■■□□□ 1.7
GTF3A-201ENST00000381140 SIPA1L3O60292 1781 aaPredicted RBP25.65■■□□□ 1.7
GTF3A-201ENST00000381140 PAPPAQ13219 1627 aa25.65■■□□□ 1.7
GTF3A-201ENST00000381140 TEFQ10587 303 aa25.64■■□□□ 1.69
GTF3A-201ENST00000381140 NFE2L2Q16236 605 aa25.64■■□□□ 1.69
GTF3A-201ENST00000381140 MCM10Q7L590 875 aa25.64■■□□□ 1.69
GTF3A-201ENST00000381140 STK32BQ9NY57 414 aa25.64■■□□□ 1.69
GTF3A-201ENST00000381140 DCTN1Q14203 1278 aa25.63■■□□□ 1.69
GTF3A-201ENST00000381140 RBM42Q9BTD8 480 aaKnown RBP25.63■■□□□ 1.69
GTF3A-201ENST00000381140 LOC102724428A0A0B4J2F2 783 aa25.61■■□□□ 1.69
GTF3A-201ENST00000381140 SIK1P57059 783 aa25.61■■□□□ 1.69
GTF3A-201ENST00000381140 PTCD1O75127 700 aaKnown RBP25.6■■□□□ 1.69
GTF3A-201ENST00000381140 SLC39A6Q13433 755 aa25.6■■□□□ 1.69
GTF3A-201ENST00000381140 RUNDC1Q96C34 613 aa25.6■■□□□ 1.69
GTF3A-201ENST00000381140 RRP7AQ9Y3A4 280 aaKnown RBP25.6■■□□□ 1.69
GTF3A-201ENST00000381140 TUBGCP6Q96RT7 1819 aa25.6■■□□□ 1.69
GTF3A-201ENST00000381140 ATP6V1AP38606 617 aa25.58■■□□□ 1.69
GTF3A-201ENST00000381140 NEUROD2Q15784 382 aa25.58■■□□□ 1.69
GTF3A-201ENST00000381140 SLC15A2Q16348 729 aa25.58■■□□□ 1.69
GTF3A-201ENST00000381140 ZNF827Q17R98 1081 aa25.58■■□□□ 1.69
GTF3A-201ENST00000381140 CEMIPQ8WUJ3 1361 aa25.58■■□□□ 1.69
GTF3A-201ENST00000381140 HTATSF1O43719 755 aaKnown RBP25.56■■□□□ 1.68
GTF3A-201ENST00000381140 TMPOP42166 694 aaKnown RBP25.56■■□□□ 1.68
GTF3A-201ENST00000381140 RIPK4P57078 832 aa25.56■■□□□ 1.68
GTF3A-201ENST00000381140 C4BP0C0L5 1744 aa25.56■■□□□ 1.68
GTF3A-201ENST00000381140 THUMPD2Q9BTF0 503 aaKnown RBP25.56■■□□□ 1.68
GTF3A-201ENST00000381140 UBR2Q8IWV8 1755 aa25.55■■□□□ 1.68
GTF3A-201ENST00000381140 ITPK1Q13572 414 aa25.55■■□□□ 1.68
GTF3A-201ENST00000381140 MIER1Q8N108 512 aa25.55■■□□□ 1.68
GTF3A-201ENST00000381140 PNISRQ8TF01 805 aaKnown RBP25.55■■□□□ 1.68
GTF3A-201ENST00000381140 ZNF831Q5JPB2 1677 aa25.54■■□□□ 1.68
GTF3A-201ENST00000381140 TTC5Q8N0Z6 440 aa25.54■■□□□ 1.68
GTF3A-201ENST00000381140 AKT1S1Q96B36 256 aa25.54■■□□□ 1.68
GTF3A-201ENST00000381140 SLC4A9Q96Q91 983 aa25.54■■□□□ 1.68
GTF3A-201ENST00000381140 COL5A3P25940 1745 aaPredicted RBP25.53■■□□□ 1.68
GTF3A-201ENST00000381140 TJP1Q07157 1748 aa25.53■■□□□ 1.68
GTF3A-201ENST00000381140 LINC00116Q8NCU8 138 aa25.53■■□□□ 1.68
GTF3A-201ENST00000381140 TFCP2L1Q9NZI6 479 aa25.53■■□□□ 1.68
GTF3A-201ENST00000381140 QSER1Q2KHR3 1735 aa25.52■■□□□ 1.68
GTF3A-201ENST00000381140 BTBD11A6QL63 1104 aa25.52■■□□□ 1.68
GTF3A-201ENST00000381140 KCPQ6ZWJ8 1503 aa25.51■■□□□ 1.67
GTF3A-201ENST00000381140 CASZ1Q86V15 1759 aa25.51■■□□□ 1.67
GTF3A-201ENST00000381140 SENP3-EIF4A1A0A087X0R7 540 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 APAF1O14727 1248 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 LMOD3Q0VAK6 560 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 FAM9BQ8IZU0 186 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 AK7Q96M32 723 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 PDGFDQ9GZP0 370 aaPredicted RBP25.5■■□□□ 1.67
GTF3A-201ENST00000381140 UBR3Q6ZT12 1888 aa25.5■■□□□ 1.67
GTF3A-201ENST00000381140 MYH14Q7Z406 1995 aaKnown RBP25.48■■□□□ 1.67
GTF3A-201ENST00000381140 KCNQ3O43525 872 aa25.48■■□□□ 1.67
GTF3A-201ENST00000381140 HMGB2P26583 209 aaKnown RBP25.48■■□□□ 1.67
GTF3A-201ENST00000381140 ZNF790Q6PG37 636 aa25.48■■□□□ 1.67
GTF3A-201ENST00000381140 MIS18AQ9NYP9 233 aa25.48■■□□□ 1.67
GTF3A-201ENST00000381140 TAF7Q15545 349 aaPredicted RBP25.47■■□□□ 1.67
GTF3A-201ENST00000381140 KDM3BQ7LBC6 1761 aa25.46■■□□□ 1.67
GTF3A-201ENST00000381140 MSH5O43196 834 aa25.46■■□□□ 1.67
GTF3A-201ENST00000381140 DNAJC10Q8IXB1 793 aa25.45■■□□□ 1.67
GTF3A-201ENST00000381140 ZNF496Q96IT1 587 aaPredicted RBP25.45■■□□□ 1.67
GTF3A-201ENST00000381140 CICQ96RK0 1608 aaPredicted RBP25.45■■□□□ 1.66
GTF3A-201ENST00000381140 PNPLA7Q6ZV29 1317 aa25.45■■□□□ 1.66
GTF3A-201ENST00000381140 GNPATO15228 680 aa25.44■■□□□ 1.66
GTF3A-201ENST00000381140 PHF14O94880 888 aa25.44■■□□□ 1.66
GTF3A-201ENST00000381140 SMIM5Q71RC9 77 aa25.44■■□□□ 1.66
GTF3A-201ENST00000381140 TRIM35Q9UPQ4 493 aa25.44■■□□□ 1.66
GTF3A-201ENST00000381140 ZBTB7AO95365 584 aa25.43■■□□□ 1.66
GTF3A-201ENST00000381140 FMNL2Q96PY5 1086 aa25.43■■□□□ 1.66
GTF3A-201ENST00000381140 HEG1Q9ULI3 1381 aa25.42■■□□□ 1.66
GTF3A-201ENST00000381140 CRKLP46109 303 aaKnown RBP25.41■■□□□ 1.66
GTF3A-201ENST00000381140 AMIGO3Q86WK7 504 aa25.41■■□□□ 1.66
GTF3A-201ENST00000381140 COL23A1Q86Y22 540 aaPredicted RBP25.4■■□□□ 1.66
GTF3A-201ENST00000381140 ATF5Q9Y2D1 282 aaPredicted RBP25.4■■□□□ 1.66
GTF3A-201ENST00000381140 LAS1LQ9Y4W2 734 aaKnown RBP25.4■■□□□ 1.66
GTF3A-201ENST00000381140 CNTNAP4Q9C0A0 1308 aa25.39■■□□□ 1.66
GTF3A-201ENST00000381140 VSIG10Q8N0Z9 540 aa25.39■■□□□ 1.65
GTF3A-201ENST00000381140 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.38■■□□□ 1.65
GTF3A-201ENST00000381140 TSPYL4Q9UJ04 414 aa25.38■■□□□ 1.65
GTF3A-201ENST00000381140 RTCBQ9Y3I0 505 aaKnown RBP25.38■■□□□ 1.65
GTF3A-201ENST00000381140 LRP5O75197 1615 aa25.38■■□□□ 1.65
GTF3A-201ENST00000381140 CCER2I3L3R5 266 aa25.37■■□□□ 1.65
GTF3A-201ENST00000381140 CYP19A1P11511 503 aaPredicted RBP25.37■■□□□ 1.65
GTF3A-201ENST00000381140 RC3H1Q5TC82 1133 aaKnown RBP25.37■■□□□ 1.65
GTF3A-201ENST00000381140 SALL2Q9Y467 1007 aaPredicted RBP25.37■■□□□ 1.65
GTF3A-201ENST00000381140 FLAD1Q8NFF5 587 aa25.36■■□□□ 1.65
GTF3A-201ENST00000381140 SPON1Q9HCB6 807 aa25.36■■□□□ 1.65
GTF3A-201ENST00000381140 CCDC87Q9NVE4 849 aa25.36■■□□□ 1.65
GTF3A-201ENST00000381140 SSFA2P28290 1259 aa25.35■■□□□ 1.65
GTF3A-201ENST00000381140 C4AP0C0L4 1744 aa25.35■■□□□ 1.65
GTF3A-201ENST00000381140 PRAMEF22A3QJZ6 481 aa25.34■■□□□ 1.65
GTF3A-201ENST00000381140 STARD3NLO95772 234 aa25.34■■□□□ 1.65
GTF3A-201ENST00000381140 INTS5Q6P9B9 1019 aaKnown RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms