RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ELL2O00472 640 aaPredicted RBP27.13■■□□□ 1.93
TRIM54-202ENST00000380075 QTRT2Q9H974 415 aaKnown RBP27.13■■□□□ 1.93
TRIM54-202ENST00000380075 NWD2Q9ULI1 1742 aa27.12■■□□□ 1.93
TRIM54-202ENST00000380075 RTL5Q5HYW3 569 aaPredicted RBP27.12■■□□□ 1.93
TRIM54-202ENST00000380075 CRB1P82279 1406 aa27.12■■□□□ 1.93
TRIM54-202ENST00000380075 CSB-PGBD3P0DP91 1061 aa27.11■■□□□ 1.93
TRIM54-202ENST00000380075 GAS2L2Q8NHY3 880 aa27.11■■□□□ 1.93
TRIM54-202ENST00000380075 USP35Q9P2H5 1018 aa27.11■■□□□ 1.93
TRIM54-202ENST00000380075 RGPD5Q99666 1765 aa27.11■■□□□ 1.93
TRIM54-202ENST00000380075 HTATSF1O43719 755 aaKnown RBP27.1■■□□□ 1.93
TRIM54-202ENST00000380075 VPS72Q15906 364 aa27.1■■□□□ 1.93
TRIM54-202ENST00000380075 GCC1Q96CN9 775 aa27.1■■□□□ 1.93
TRIM54-202ENST00000380075 TRPC5Q9UL62 973 aaPredicted RBP27.1■■□□□ 1.93
TRIM54-202ENST00000380075 NRAPQ86VF7 1730 aa27.1■■□□□ 1.93
TRIM54-202ENST00000380075 WDR17Q8IZU2 1322 aa27.1■■□□□ 1.93
TRIM54-202ENST00000380075 NUCB1Q02818 461 aa27.09■■□□□ 1.93
TRIM54-202ENST00000380075 CCDC9Q9Y3X0 531 aaKnown RBP27.09■■□□□ 1.93
TRIM54-202ENST00000380075 POTEAQ6S8J7 498 aa27.09■■□□□ 1.93
TRIM54-202ENST00000380075 MCM10Q7L590 875 aa27.09■■□□□ 1.93
TRIM54-202ENST00000380075 RTF1Q92541 710 aaKnown RBP27.09■■□□□ 1.93
TRIM54-202ENST00000380075 EYA1Q99502 592 aa27.09■■□□□ 1.93
TRIM54-202ENST00000380075 TOM1L2Q6ZVM7 507 aa27.08■■□□□ 1.93
TRIM54-202ENST00000380075 ATRNO75882 1429 aa27.07■■□□□ 1.92
TRIM54-202ENST00000380075 SEC24BO95487 1268 aa27.06■■□□□ 1.92
TRIM54-202ENST00000380075 MTHFSDQ2M296 383 aaKnown RBP27.06■■□□□ 1.92
TRIM54-202ENST00000380075 NLRP2Q9NX02 1062 aa27.06■■□□□ 1.92
TRIM54-202ENST00000380075 PTPRCP08575 1304 aa27.05■■□□□ 1.92
TRIM54-202ENST00000380075 SPATA31A5Q5VU36 1347 aa27.05■■□□□ 1.92
TRIM54-202ENST00000380075 SPATA31A7Q8IWB4 1347 aa27.05■■□□□ 1.92
TRIM54-202ENST00000380075 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.05■■□□□ 1.92
TRIM54-202ENST00000380075 GJD4Q96KN9 370 aaPredicted RBP27.05■■□□□ 1.92
TRIM54-202ENST00000380075 INTS3Q68E01 1043 aaKnown RBP27.04■■□□□ 1.92
TRIM54-202ENST00000380075 SPATA31A1Q5TZJ5 1347 aa27.04■■□□□ 1.92
TRIM54-202ENST00000380075 NBPF6Q5VWK0 638 aa27.03■■□□□ 1.92
TRIM54-202ENST00000380075 CHD1LQ86WJ1 897 aa27.03■■□□□ 1.92
TRIM54-202ENST00000380075 NBPF4Q96M43 638 aa27.03■■□□□ 1.92
TRIM54-202ENST00000380075 TBC1D32Q96NH3 1257 aa27.03■■□□□ 1.92
TRIM54-202ENST00000380075 BECN1Q14457 450 aa27.02■■□□□ 1.92
TRIM54-202ENST00000380075 CARD10Q9BWT7 1032 aa27.02■■□□□ 1.92
TRIM54-202ENST00000380075 LRRC37A3O60309 1634 aa27.01■■□□□ 1.91
TRIM54-202ENST00000380075 USHBP1Q8N6Y0 703 aa27■■□□□ 1.91
TRIM54-202ENST00000380075 RGS12O14924 1447 aa26.99■■□□□ 1.91
TRIM54-202ENST00000380075 RBM6P78332 1123 aaKnown RBP26.98■■□□□ 1.91
TRIM54-202ENST00000380075 TSPYL4Q9UJ04 414 aa26.98■■□□□ 1.91
TRIM54-202ENST00000380075 SOS1Q07889 1333 aaPredicted RBP26.98■■□□□ 1.91
TRIM54-202ENST00000380075 RXRBP28702 533 aa26.98■■□□□ 1.91
TRIM54-202ENST00000380075 BABAM1Q9NWV8 329 aa26.97■■□□□ 1.91
TRIM54-202ENST00000380075 SLC4A3P48751 1232 aa26.97■■□□□ 1.91
TRIM54-202ENST00000380075 FAM98CQ17RN3 349 aaKnown RBP26.97■■□□□ 1.91
TRIM54-202ENST00000380075 GLI3P10071 1580 aa26.96■■□□□ 1.91
TRIM54-202ENST00000380075 GNAT3A8MTJ3 354 aa26.96■■□□□ 1.91
TRIM54-202ENST00000380075 KRT24Q2M2I5 525 aa26.95■■□□□ 1.91
TRIM54-202ENST00000380075 LNPKQ9C0E8 428 aa26.95■■□□□ 1.91
TRIM54-202ENST00000380075 THRAP3Q9Y2W1 955 aaKnown RBP26.95■■□□□ 1.9
TRIM54-202ENST00000380075 SIRT2Q8IXJ6 389 aa26.94■■□□□ 1.9
TRIM54-202ENST00000380075 C1orf115Q9H7X2 142 aa26.94■■□□□ 1.9
TRIM54-202ENST00000380075 MAP3K5Q99683 1374 aa26.93■■□□□ 1.9
TRIM54-202ENST00000380075 RGPD2P0DJD1 1756 aa26.93■■□□□ 1.9
TRIM54-202ENST00000380075 BMP2KLQ5H9B9 411 aa26.93■■□□□ 1.9
TRIM54-202ENST00000380075 ANKRD45Q5TZF3 282 aa26.93■■□□□ 1.9
TRIM54-202ENST00000380075 BARGINQ6ZT62 677 aa26.93■■□□□ 1.9
TRIM54-202ENST00000380075 RPAP2Q8IXW5 612 aaPredicted RBP26.91■■□□□ 1.9
TRIM54-202ENST00000380075 FAM208AQ9UK61 1670 aaKnown RBP26.9■■□□□ 1.9
TRIM54-202ENST00000380075 ONECUT3O60422 494 aaPredicted RBP26.9■■□□□ 1.9
TRIM54-202ENST00000380075 SLC4A2P04920 1241 aa26.89■■□□□ 1.9
TRIM54-202ENST00000380075 A0A0G2JS52 829 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 DEKP35659 375 aaKnown RBP26.88■■□□□ 1.89
TRIM54-202ENST00000380075 ANKRD44Q8N8A2 993 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 NCAPD2Q15021 1401 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 IL2RBP14784 551 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 C22orf23Q9BZE7 217 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 DCTPP1Q9H773 170 aa26.88■■□□□ 1.89
TRIM54-202ENST00000380075 ATP10DQ9P241 1426 aa26.87■■□□□ 1.89
TRIM54-202ENST00000380075 SEPT12Q8IYM1 358 aa26.87■■□□□ 1.89
TRIM54-202ENST00000380075 STK31Q9BXU1 1019 aa26.86■■□□□ 1.89
TRIM54-202ENST00000380075 MIS18AQ9NYP9 233 aa26.86■■□□□ 1.89
TRIM54-202ENST00000380075 CCT4P50991 539 aaKnown RBP26.86■■□□□ 1.89
TRIM54-202ENST00000380075 DISP2A7MBM2 1401 aa26.85■■□□□ 1.89
TRIM54-202ENST00000380075 CCDC30Q5VVM6 783 aa26.85■■□□□ 1.89
TRIM54-202ENST00000380075 RAPGEF4Q8WZA2 1011 aa26.85■■□□□ 1.89
TRIM54-202ENST00000380075 EIF5BO60841 1220 aaKnown RBP26.84■■□□□ 1.89
TRIM54-202ENST00000380075 MFAP1P55081 439 aaKnown RBP26.84■■□□□ 1.89
TRIM54-202ENST00000380075 TAF7Q15545 349 aaPredicted RBP26.84■■□□□ 1.89
TRIM54-202ENST00000380075 MEGF6O75095 1541 aa26.84■■□□□ 1.89
TRIM54-202ENST00000380075 NFKBIBQ15653 356 aa26.83■■□□□ 1.89
TRIM54-202ENST00000380075 CDCA7Q9BWT1 371 aaPredicted RBP26.83■■□□□ 1.89
TRIM54-202ENST00000380075 IL17REQ8NFR9 667 aa26.82■■□□□ 1.88
TRIM54-202ENST00000380075 CEP85Q6P2H3 762 aa26.82■■□□□ 1.88
TRIM54-202ENST00000380075 TATP17735 454 aaPredicted RBP26.81■■□□□ 1.88
TRIM54-202ENST00000380075 CEMIPQ8WUJ3 1361 aa26.8■■□□□ 1.88
TRIM54-202ENST00000380075 THSD7AQ9UPZ6 1657 aa26.79■■□□□ 1.88
TRIM54-202ENST00000380075 DDB1Q16531 1140 aa26.79■■□□□ 1.88
TRIM54-202ENST00000380075 EXOC5O00471 708 aa26.78■■□□□ 1.88
TRIM54-202ENST00000380075 RBM25P49756 843 aaKnown RBP26.78■■□□□ 1.88
TRIM54-202ENST00000380075 CHMP4AQ9BY43 222 aa26.78■■□□□ 1.88
TRIM54-202ENST00000380075 HMMRO75330 724 aa26.78■■□□□ 1.88
TRIM54-202ENST00000380075 TBC1D2Q9BYX2 928 aa26.78■■□□□ 1.88
TRIM54-202ENST00000380075 CACNA1FO60840 1977 aa26.77■■□□□ 1.88
TRIM54-202ENST00000380075 OVOS2A0A0G2JMS6 1433 aa26.77■■□□□ 1.88
TRIM54-202ENST00000380075 MEIS3Q99687 375 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms