RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 DDX46Q7L014 1031 aaKnown RBP12.84□□□□□ -0.35
HIF3A-205ENST00000377670 CNTROBQ8N137 903 aa12.84□□□□□ -0.35
HIF3A-205ENST00000377670 ZNF518AQ6AHZ1 1483 aa12.84□□□□□ -0.35
HIF3A-205ENST00000377670 SLF2Q8IX21 1173 aa12.84□□□□□ -0.35
HIF3A-205ENST00000377670 SRCIN1Q9C0H9 1055 aa12.84□□□□□ -0.35
HIF3A-205ENST00000377670 TRMT112Q9UI30 125 aaKnown RBP12.84□□□□□ -0.35
HIF3A-205ENST00000377670 CALRP27797 417 aaKnown RBP12.83□□□□□ -0.35
HIF3A-205ENST00000377670 SMARCC1Q92922 1105 aaPredicted RBP12.83□□□□□ -0.35
HIF3A-205ENST00000377670 ABCF2Q9UG63 623 aa12.83□□□□□ -0.35
HIF3A-205ENST00000377670 TEX13AQ9BXU3 409 aaPredicted RBP12.83□□□□□ -0.36
HIF3A-205ENST00000377670 EXOC6BQ9Y2D4 811 aa12.83□□□□□ -0.36
HIF3A-205ENST00000377670 ZNF76P36508 570 aa12.83□□□□□ -0.36
HIF3A-205ENST00000377670 CAVIN1Q6NZI2 390 aaKnown RBP12.83□□□□□ -0.36
HIF3A-205ENST00000377670 CDC45O75419 566 aa12.83□□□□□ -0.36
HIF3A-205ENST00000377670 USP5P45974 858 aa12.83□□□□□ -0.36
HIF3A-205ENST00000377670 ZFYVE27Q5T4F4 411 aa12.83□□□□□ -0.36
HIF3A-205ENST00000377670 SMARCA5O60264 1052 aaPredicted RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 JDP2Q8WYK2 163 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 CARD14Q9BXL6 1004 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 POLR3DP05423 398 aaPredicted RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 IFIT1P09914 478 aaKnown RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 DZIP1Q86YF9 867 aaKnown RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 PZPP20742 1482 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 METTL24Q5JXM2 366 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 ZNF287Q9HBT7 754 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 FKBP4Q02790 459 aaKnown RBP eCLIP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 HDAC9Q9UKV0 1011 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 SMC3Q9UQE7 1217 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 TARBP1Q13395 1621 aaKnown RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 IPO7O95373 1038 aaKnown RBP12.82□□□□□ -0.36
HIF3A-205ENST00000377670 GPR162Q16538 588 aa12.82□□□□□ -0.36
HIF3A-205ENST00000377670 SRGAP3O43295 1099 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 NBPF6Q5VWK0 638 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 NBPF5PQ86XG9 351 aaPredicted RBP12.81□□□□□ -0.36
HIF3A-205ENST00000377670 AEBP1Q8IUX7 1158 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 NBPF4Q96M43 638 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 FEZ1Q99689 392 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 BIN2Q9UBW5 565 aaPredicted RBP12.81□□□□□ -0.36
HIF3A-205ENST00000377670 ANXA1P04083 346 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 PODXL2Q9NZ53 605 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 CCDC66A2RUB6 948 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 TDO2P48775 406 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 CCDC173Q0VFZ6 552 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 VTI1AQ96AJ9 217 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 ABCC2Q92887 1545 aa12.81□□□□□ -0.36
HIF3A-205ENST00000377670 HIP1O00291 1037 aa12.8□□□□□ -0.36
HIF3A-205ENST00000377670 RALGAPBQ86X10 1494 aa12.8□□□□□ -0.36
HIF3A-205ENST00000377670 PPM1FP49593 454 aaPredicted RBP12.8□□□□□ -0.36
HIF3A-205ENST00000377670 PPP1R42Q7Z4L9 355 aa12.8□□□□□ -0.36
HIF3A-205ENST00000377670 IFNL2Q8IZJ0 200 aa12.8□□□□□ -0.36
HIF3A-205ENST00000377670 MATR3P43243 847 aaKnown RBP eCLIP12.79□□□□□ -0.36
HIF3A-205ENST00000377670 BACH2Q9BYV9 841 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 ATP6V1AP38606 617 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 HSP90B2PQ58FF3 399 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 CHD1LQ86WJ1 897 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 CABLES1Q8TDN4 633 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 RUFY1Q96T51 708 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 UHRF1BP1Q6BDS2 1440 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 PSMA5P28066 241 aa12.79□□□□□ -0.36
HIF3A-205ENST00000377670 NUTM1Q86Y26 1132 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 ACBD3Q9H3P7 528 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 C19orf44Q9H6X5 657 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 TRIM21P19474 475 aaKnown RBP12.78□□□□□ -0.36
HIF3A-205ENST00000377670 CCT4P50991 539 aaKnown RBP12.78□□□□□ -0.36
HIF3A-205ENST00000377670 NEK4P51957 841 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 OGFOD1Q8N543 542 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 FMNL2Q96PY5 1086 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 CWC15Q9P013 229 aaKnown RBP12.78□□□□□ -0.36
HIF3A-205ENST00000377670 TNIP1Q15025 636 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 TRIM27P14373 513 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 ATP2B1P20020 1258 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 TNNQ9UQP3 1299 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 SETDB2Q96T68 719 aa12.78□□□□□ -0.36
HIF3A-205ENST00000377670 RIMS2Q9UQ26 1411 aa12.77□□□□□ -0.36
HIF3A-205ENST00000377670 GCC1Q96CN9 775 aa12.77□□□□□ -0.36
HIF3A-205ENST00000377670 LRRCC1Q9C099 1032 aa12.77□□□□□ -0.36
HIF3A-205ENST00000377670 IDH1O75874 414 aaKnown RBP12.77□□□□□ -0.37
HIF3A-205ENST00000377670 TXLNAP40222 546 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 JARID2Q92833 1246 aaPredicted RBP12.77□□□□□ -0.37
HIF3A-205ENST00000377670 TSPY26PQ9H489 355 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 CCDC69A6NI79 296 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 PRPF40AO75400 957 aaKnown RBP12.77□□□□□ -0.37
HIF3A-205ENST00000377670 GPTP24298 496 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 ANKRD24Q8TF21 1146 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 UHRF1BP1LA0JNW5 1464 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 OFD1O75665 1012 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 CDC5LQ99459 802 aaKnown RBP12.77□□□□□ -0.37
HIF3A-205ENST00000377670 MBIPQ9NS73 344 aa12.77□□□□□ -0.37
HIF3A-205ENST00000377670 MPHOSPH6Q99547 160 aaKnown RBP12.76□□□□□ -0.37
HIF3A-205ENST00000377670 DNMT1P26358 1616 aaKnown RBP12.76□□□□□ -0.37
HIF3A-205ENST00000377670 SAMD9Q5K651 1589 aa12.76□□□□□ -0.37
HIF3A-205ENST00000377670 NUP133Q8WUM0 1156 aa12.76□□□□□ -0.37
HIF3A-205ENST00000377670 CCDC73Q6ZRK6 1079 aa12.76□□□□□ -0.37
HIF3A-205ENST00000377670 ZCRB1Q8TBF4 217 aaKnown RBP12.76□□□□□ -0.37
HIF3A-205ENST00000377670 CA8P35219 290 aa12.76□□□□□ -0.37
HIF3A-205ENST00000377670 NKTRP30414 1462 aaKnown RBP12.75□□□□□ -0.37
HIF3A-205ENST00000377670 ABCC10Q5T3U5 1492 aa12.75□□□□□ -0.37
HIF3A-205ENST00000377670 AAMPQ13685 434 aa12.75□□□□□ -0.37
HIF3A-205ENST00000377670 TAF7Q15545 349 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms